Wall clock time and date at job start Tue Mar 31 2020 12:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 H 1.08996 * 109.47019 * 305.00120 * 3 2 1 5 5 C 1.52997 * 109.47070 * 65.00148 * 3 2 1 6 6 C 1.52999 * 109.46910 * 184.99933 * 3 2 1 7 7 C 1.53003 * 109.47233 * 65.75925 * 6 3 2 8 8 H 1.08996 * 109.46851 * 304.34963 * 7 6 3 9 9 C 1.52998 * 109.47359 * 184.35100 * 7 6 3 10 10 N 1.46495 * 109.46846 * 64.34971 * 7 6 3 11 11 C 1.34783 * 120.00075 * 204.99987 * 10 7 6 12 12 O 1.21368 * 119.99740 * 0.02562 * 11 10 7 13 13 C 1.49304 * 120.00371 * 180.02562 * 11 10 7 14 14 O 1.21412 * 119.99714 * 359.97438 * 13 11 10 15 15 N 1.34770 * 120.00215 * 180.02562 * 13 11 10 16 16 C 1.40299 * 120.00257 * 180.02562 * 15 13 11 17 17 C 1.40715 * 126.09478 * 359.68697 * 16 15 13 18 18 N 1.30884 * 108.37143 * 179.81980 * 17 16 15 19 19 N 1.40066 * 108.43430 * 0.43948 * 18 17 16 20 20 C 1.37292 * 126.05285 * 179.69576 * 19 18 17 21 21 H 1.08000 * 120.00054 * 174.82507 * 20 19 18 22 22 C 1.39007 * 120.00310 * 354.83197 * 20 19 18 23 23 N 1.31289 * 119.99970 * 5.20971 * 22 20 19 24 24 Si 1.86803 * 120.00354 * 185.21266 * 22 20 19 25 25 H 1.48501 * 109.47011 * 94.99141 * 24 22 20 26 26 H 1.48497 * 109.47132 * 214.99327 * 24 22 20 27 27 H 1.48503 * 109.46804 * 334.99402 * 24 22 20 28 28 C 1.35785 * 126.09933 * 179.97438 * 16 15 13 29 29 H 1.09001 * 109.47155 * 59.99824 * 1 2 3 30 30 H 1.09002 * 109.46951 * 299.99815 * 1 2 3 31 31 H 1.08996 * 109.47013 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47155 * 120.00176 * 2 1 3 33 33 H 1.09002 * 109.46951 * 240.00185 * 2 1 3 34 34 H 1.08995 * 109.47546 * 174.57893 * 5 3 2 35 35 H 1.09005 * 109.47103 * 294.58655 * 5 3 2 36 36 H 1.09004 * 109.47034 * 54.58129 * 5 3 2 37 37 H 1.08997 * 109.47114 * 185.76056 * 6 3 2 38 38 H 1.09002 * 109.47495 * 305.75845 * 6 3 2 39 39 H 1.09007 * 109.46751 * 300.00454 * 9 7 6 40 40 H 1.09001 * 109.47159 * 59.99739 * 9 7 6 41 41 H 1.08995 * 109.47417 * 179.97438 * 9 7 6 42 42 H 0.97001 * 120.00491 * 25.00463 * 10 7 6 43 43 H 0.97005 * 119.99793 * 359.97438 * 15 13 11 44 44 H 1.07992 * 125.81898 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99916 * 179.97438 * 23 22 20 46 46 H 1.08004 * 126.25358 * 359.96330 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5649 1.4443 -0.1257 7 6 3.9644 0.8911 -1.4951 8 1 3.5275 -0.0985 -1.6287 9 6 5.4887 0.7913 -1.5800 10 7 3.4745 1.7871 -2.5455 11 6 3.2451 1.3103 -3.7851 12 8 3.4440 0.1385 -4.0310 13 6 2.7463 2.2235 -4.8559 14 8 2.5469 3.3956 -4.6098 15 7 2.5165 1.7466 -6.0952 16 6 2.0483 2.6048 -7.1015 17 6 1.7706 3.9768 -6.9580 18 7 1.3586 4.4372 -8.1118 19 7 1.3470 3.3809 -9.0316 20 6 0.9695 3.4609 -10.3492 21 1 1.0773 2.6020 -10.9949 22 6 0.4485 4.6475 -10.8522 23 7 0.4122 5.7207 -10.0969 24 14 -0.1999 4.7150 -12.6027 25 1 -1.6673 4.4871 -12.5962 26 1 0.0914 6.0487 -13.1873 27 1 0.4608 3.6629 -13.4162 28 6 1.7771 2.2585 -8.3862 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.0795 3.1210 1.3498 35 1 0.5495 2.2113 1.3521 36 1 1.9886 1.5345 2.1517 37 1 3.9367 2.4638 -0.0231 38 1 3.9948 0.8202 0.6578 39 1 5.9256 1.7810 -1.4463 40 1 5.8533 0.1247 -0.7984 41 1 5.7733 0.3968 -2.5553 42 1 3.3152 2.7235 -2.3490 43 1 2.6754 0.8100 -6.2917 44 1 1.8812 4.5525 -6.0510 45 1 0.0490 6.5488 -10.4480 46 1 1.8829 1.2743 -8.8183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746421338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:52 Heat of formation + Delta-G solvation = -9.579041 kcal Electronic energy + Delta-G solvation = -26966.344359 eV Core-core repulsion = 23085.420049 eV Total energy + Delta-G solvation = -3880.924310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.57507 -39.61555 -38.36855 -37.49404 -35.22227 -34.24704 -33.17412 -31.48535 -30.32555 -30.10631 -28.04152 -27.14890 -25.50856 -24.21639 -23.69288 -21.60013 -20.99186 -20.38429 -19.94291 -19.46405 -18.14252 -17.45527 -16.57139 -15.72232 -15.54081 -15.36742 -15.31574 -15.14423 -14.80994 -14.19200 -13.96513 -13.91845 -13.57263 -13.42945 -13.19332 -13.01209 -12.98299 -12.51772 -12.48911 -12.26769 -11.94921 -11.74831 -11.69753 -11.55372 -11.39861 -11.31185 -11.18645 -10.86052 -10.84380 -10.68926 -10.55032 -10.47277 -10.27990 -9.25944 -9.23065 -9.09777 -8.87223 -8.12754 -6.77707 -6.61030 -4.27924 1.68216 2.63291 2.93181 3.03805 3.08909 3.34223 3.72294 3.76084 3.99142 4.34105 4.37338 4.49237 4.57969 4.62743 4.87866 4.97252 4.99789 5.03351 5.07941 5.23908 5.28810 5.35667 5.37648 5.46391 5.49963 5.59466 5.70344 5.74829 5.84905 5.88290 5.96223 6.00400 6.15985 6.17774 6.20099 6.31641 6.36466 6.76415 6.89209 6.92902 7.16305 7.26164 7.77573 7.88160 8.11947 8.18707 8.49504 8.69805 9.31405 9.59827 10.34999 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022911 B = 0.002343 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.800543 B =11946.693486 C =12306.624920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.097 4.097 4 H 0.075 0.925 5 C -0.147 4.147 6 C -0.123 4.123 7 C 0.137 3.863 8 H 0.094 0.906 9 C -0.165 4.165 10 N -0.698 5.698 11 C 0.516 3.484 12 O -0.529 6.529 13 C 0.482 3.518 14 O -0.524 6.524 15 N -0.584 5.584 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.139 5.139 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.263 1.263 28 C -0.077 4.077 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.412 0.588 43 H 0.409 0.591 44 H 0.178 0.822 45 H 0.276 0.724 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.498 -9.300 18.391 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.116 4.116 4 H 0.094 0.906 5 C -0.204 4.204 6 C -0.161 4.161 7 C 0.033 3.967 8 H 0.112 0.888 9 C -0.224 4.224 10 N -0.352 5.352 11 C 0.297 3.703 12 O -0.406 6.406 13 C 0.263 3.737 14 O -0.401 6.401 15 N -0.227 5.227 16 C -0.175 4.175 17 C -0.202 4.202 18 N -0.092 5.092 19 N 0.095 4.905 20 C -0.455 4.455 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.187 1.187 28 C -0.229 4.229 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.248 0.752 43 H 0.244 0.756 44 H 0.194 0.806 45 H 0.086 0.914 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.033 -8.038 17.749 19.897 hybrid contribution 0.058 -0.809 -0.329 0.875 sum 4.091 -8.847 17.420 19.961 Atomic orbital electron populations 1.21810 0.95869 1.01521 1.01949 1.21645 0.96103 0.96210 1.01962 1.21219 0.94851 0.96683 0.98827 0.90625 1.21863 1.01515 1.00222 0.96834 1.21976 0.96166 1.02151 0.95767 1.21150 0.94425 0.94917 0.86211 0.88807 1.22197 0.95052 1.02286 1.02824 1.45826 1.65893 1.14267 1.09169 1.20275 0.78205 0.87902 0.83882 1.90723 1.51174 1.17089 1.81576 1.19707 0.82310 0.88081 0.83573 1.90654 1.51867 1.16581 1.81007 1.42155 1.60331 1.12418 1.07746 1.17256 1.19962 0.91805 0.88441 1.24141 1.05382 0.92323 0.98400 1.78259 1.24866 1.09244 0.96813 1.44560 1.34645 1.03663 1.07679 1.19928 1.42644 1.00579 0.82301 0.86434 1.25670 0.96093 0.94662 1.00684 1.70216 1.33180 1.00233 1.35730 0.85790 0.79423 0.78640 0.80195 1.19583 1.20055 1.18712 1.21312 1.15664 0.93491 0.92394 0.92621 0.92651 0.92940 0.92126 0.91687 0.92679 0.92440 0.92842 0.91012 0.90186 0.92234 0.91532 0.91852 0.75172 0.75624 0.80572 0.91373 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -0.98 5.28 -26.73 -0.14 -1.12 16 3 C -0.10 -0.76 2.33 -90.62 -0.21 -0.97 16 4 H 0.08 0.72 7.58 -51.93 -0.39 0.33 16 5 C -0.15 -1.01 8.81 37.16 0.33 -0.68 16 6 C -0.12 -0.86 4.22 -26.73 -0.11 -0.97 16 7 C 0.14 1.26 2.45 -67.93 -0.17 1.10 16 8 H 0.09 0.97 5.74 -51.93 -0.30 0.68 16 9 C -0.17 -1.43 9.48 37.16 0.35 -1.07 16 10 N -0.70 -8.06 4.40 -54.29 -0.24 -8.30 16 11 C 0.52 7.72 7.85 -11.65 -0.09 7.62 16 12 O -0.53 -8.61 16.14 5.48 0.09 -8.52 16 13 C 0.48 8.72 7.85 -11.66 -0.09 8.62 16 14 O -0.52 -10.54 13.62 5.44 0.07 -10.47 16 15 N -0.58 -11.06 5.45 -10.46 -0.06 -11.12 16 16 C -0.07 -1.59 6.90 -83.92 -0.58 -2.17 16 17 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.50 10.41 30.81 0.32 -7.18 16 19 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 20 C -0.32 -8.44 10.24 -14.82 -0.15 -8.59 16 21 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.17 11.83 55.50 0.66 -20.52 16 24 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 28 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.41 6.69 -51.93 -0.35 0.07 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.60 6.29 -51.93 -0.33 0.27 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.41 6.84 -51.93 -0.35 0.05 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.41 4.49 8.07 -40.82 -0.33 4.16 16 43 H 0.41 6.71 8.29 -40.82 -0.34 6.37 16 44 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 45 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 380.41 15.07 5.73 5.73 Total: -1.00 -31.87 380.41 -6.36 -38.23 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.90 Total: 13.24 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -0.98 Total: -0.97 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.64 Total: -50.94 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.16 Total: -18.99 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.87 -6.36 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746421338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.649 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds