Wall clock time and date at job start Tue Mar 31 2020 12:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47545 * 2 1 4 4 H 1.09004 * 109.47311 * 54.99342 * 3 2 1 5 5 C 1.52998 * 109.46885 * 294.99868 * 3 2 1 6 6 C 1.52998 * 109.47776 * 174.99763 * 3 2 1 7 7 C 1.52995 * 109.47525 * 184.99938 * 6 3 2 8 8 H 1.09002 * 109.46778 * 305.00076 * 7 6 3 9 9 C 1.52999 * 109.47236 * 185.00240 * 7 6 3 10 10 N 1.46501 * 109.47176 * 64.99663 * 7 6 3 11 11 C 1.34769 * 120.00313 * 204.99867 * 10 7 6 12 12 O 1.21366 * 119.99965 * 0.02562 * 11 10 7 13 13 C 1.49311 * 120.00061 * 180.02562 * 11 10 7 14 14 O 1.21397 * 119.99795 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99820 * 180.02562 * 13 11 10 16 16 C 1.40291 * 119.99916 * 179.97438 * 15 13 11 17 17 C 1.40728 * 126.10043 * 359.97438 * 16 15 13 18 18 N 1.30869 * 108.37411 * 179.77351 * 17 16 15 19 19 N 1.40064 * 108.43837 * 0.38012 * 18 17 16 20 20 C 1.37301 * 126.05474 * 179.87893 * 19 18 17 21 21 H 1.08002 * 119.99622 * 179.68469 * 20 19 18 22 22 C 1.39003 * 119.99972 * 359.96620 * 20 19 18 23 23 N 1.31284 * 120.00043 * 359.72316 * 22 20 19 24 24 Si 1.86801 * 119.99884 * 179.72361 * 22 20 19 25 25 H 1.48494 * 109.47230 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.46780 * 119.99905 * 24 22 20 27 27 H 1.48493 * 109.47151 * 239.99809 * 24 22 20 28 28 C 1.35786 * 126.10040 * 179.97438 * 16 15 13 29 29 H 1.08992 * 109.47204 * 300.00265 * 1 2 3 30 30 H 1.09005 * 109.46836 * 59.99965 * 1 2 3 31 31 H 1.09002 * 109.46868 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47197 * 239.99738 * 2 1 3 33 33 H 1.09005 * 109.46836 * 120.00035 * 2 1 3 34 34 H 1.09003 * 109.47444 * 299.99981 * 5 3 2 35 35 H 1.09006 * 109.47479 * 59.99834 * 5 3 2 36 36 H 1.08998 * 109.47383 * 179.97438 * 5 3 2 37 37 H 1.09004 * 109.46506 * 64.99589 * 6 3 2 38 38 H 1.09004 * 109.46702 * 305.00355 * 6 3 2 39 39 H 1.09010 * 109.46897 * 299.99891 * 9 7 6 40 40 H 1.09001 * 109.47055 * 59.99785 * 9 7 6 41 41 H 1.08995 * 109.47197 * 179.97438 * 9 7 6 42 42 H 0.97001 * 119.99297 * 25.00665 * 10 7 6 43 43 H 0.97005 * 120.00098 * 0.02562 * 15 13 11 44 44 H 1.07994 * 125.80713 * 0.02562 * 17 16 15 45 45 H 0.97004 * 119.99619 * 180.02562 * 23 22 20 46 46 H 1.08006 * 126.25004 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1264 -1.3074 6 6 3.5649 1.4443 0.1258 7 6 4.0646 2.8849 0.2511 8 1 3.6972 3.4715 -0.5910 9 6 5.5945 2.8959 0.2515 10 7 3.5717 3.4656 1.5026 11 6 3.4335 4.8013 1.6173 12 8 3.7168 5.5231 0.6837 13 6 2.9317 5.3931 2.8930 14 8 2.6478 4.6710 3.8267 15 7 2.7930 6.7288 3.0075 16 6 2.3210 7.2848 4.2059 17 6 1.9559 6.5724 5.3633 18 7 1.5713 7.4316 6.2725 19 7 1.6664 8.7204 5.7324 20 6 1.3501 9.8915 6.3756 21 1 1.4660 10.8362 5.8651 22 6 0.8864 9.8616 7.6856 23 7 0.7456 8.7132 8.3061 24 14 0.4634 11.4554 8.5633 25 1 0.7082 12.6022 7.6523 26 1 -0.9669 11.4361 8.9624 27 1 1.3130 11.5948 9.7731 28 6 2.1350 8.6064 4.4561 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0700 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3970 36 1 1.9984 3.1542 -1.3073 37 1 4.0030 0.9835 -0.7596 38 1 3.8570 0.8800 1.0114 39 1 5.9619 2.3093 1.0936 40 1 5.9611 2.4639 -0.6797 41 1 5.9505 3.9222 0.3403 42 1 3.3450 2.8886 2.2487 43 1 3.0187 7.3056 2.2610 44 1 1.9913 5.4996 5.4824 45 1 0.4216 8.6924 9.2202 46 1 2.3228 9.4189 3.7697 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746421339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:56 Heat of formation + Delta-G solvation = -9.542778 kcal Electronic energy + Delta-G solvation = -26864.519789 eV Core-core repulsion = 22983.597052 eV Total energy + Delta-G solvation = -3880.922737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.57351 -39.61219 -38.35645 -37.49326 -35.29036 -34.26735 -33.17727 -31.59024 -30.32156 -29.85501 -28.04124 -27.13259 -25.55427 -24.49567 -23.72238 -21.33294 -20.91507 -20.37367 -20.05770 -19.46398 -18.11910 -17.45784 -16.60052 -15.70989 -15.53769 -15.43567 -15.23648 -15.18070 -14.99423 -14.18070 -13.97099 -13.85611 -13.61533 -13.44272 -13.14597 -12.99790 -12.84178 -12.69137 -12.42626 -12.28027 -12.01839 -11.74563 -11.62486 -11.56645 -11.35349 -11.30578 -11.17478 -10.86658 -10.83883 -10.73991 -10.53064 -10.52195 -10.29157 -9.26372 -9.23171 -9.10004 -8.87403 -8.12903 -6.77633 -6.60657 -4.27763 1.68191 2.63280 2.92439 3.03940 3.09669 3.34171 3.72501 3.75735 3.99083 4.27833 4.37440 4.55563 4.58748 4.62116 4.91768 4.94836 4.98065 5.03347 5.06818 5.13776 5.29291 5.32304 5.40897 5.49188 5.53564 5.56498 5.72584 5.75330 5.82682 5.83930 5.90014 6.03016 6.15054 6.17573 6.20124 6.31896 6.36278 6.76359 6.89081 6.92957 7.16362 7.26158 7.77579 7.88156 8.11966 8.18722 8.49532 8.69918 9.31335 9.59970 10.35210 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.002321 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.863793 B =12058.817303 C =12694.383874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.097 4.097 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.123 4.123 7 C 0.137 3.863 8 H 0.094 0.906 9 C -0.165 4.165 10 N -0.698 5.698 11 C 0.516 3.484 12 O -0.530 6.530 13 C 0.483 3.517 14 O -0.523 6.523 15 N -0.584 5.584 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.260 5.260 19 N -0.139 5.139 20 C -0.321 4.321 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.077 4.077 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.412 0.588 43 H 0.409 0.591 44 H 0.178 0.822 45 H 0.275 0.725 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -13.098 -16.089 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.116 4.116 4 H 0.094 0.906 5 C -0.209 4.209 6 C -0.160 4.160 7 C 0.033 3.967 8 H 0.112 0.888 9 C -0.224 4.224 10 N -0.352 5.352 11 C 0.297 3.703 12 O -0.406 6.406 13 C 0.263 3.737 14 O -0.401 6.401 15 N -0.227 5.227 16 C -0.175 4.175 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.094 4.906 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.172 4.172 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.199 1.199 28 C -0.229 4.229 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.248 0.752 43 H 0.244 0.756 44 H 0.194 0.806 45 H 0.086 0.914 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.633 -13.042 -14.692 19.978 hybrid contribution 0.190 0.639 -0.542 0.859 sum 3.823 -12.403 -15.234 20.013 Atomic orbital electron populations 1.21831 0.95865 1.01442 1.02159 1.21561 0.96048 0.96130 1.01809 1.21216 0.94839 0.96383 0.99115 0.90639 1.21940 1.01531 1.00640 0.96746 1.21973 0.95860 0.95128 1.03084 1.21147 0.94076 0.94365 0.87100 0.88782 1.22197 0.95035 1.02919 1.02205 1.45828 1.65608 1.06566 1.17163 1.20276 0.78402 0.83233 0.88359 1.90722 1.49401 1.60240 1.40216 1.19705 0.82480 0.83307 0.88175 1.90650 1.50103 1.59901 1.39441 1.42155 1.60067 1.05795 1.14638 1.17257 1.19795 0.91761 0.88655 1.24144 1.05233 1.00204 0.90687 1.78257 1.25146 0.86017 1.19700 1.44572 1.34234 1.05688 1.06069 1.19970 1.45261 0.83107 0.97022 0.86399 1.25670 0.95749 0.99003 0.96744 1.70220 1.32805 1.24785 1.11577 0.85739 0.78657 0.80188 0.79441 1.18622 1.19859 1.19873 1.21309 1.15309 0.95362 0.90918 0.92538 0.92536 0.92972 0.92156 0.91987 0.92779 0.92444 0.92383 0.90186 0.91053 0.92237 0.91531 0.91853 0.75172 0.75623 0.80571 0.91418 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.97 16 3 C -0.10 -0.76 2.33 -90.62 -0.21 -0.97 16 4 H 0.08 0.72 7.62 -51.93 -0.40 0.32 16 5 C -0.15 -1.21 8.71 37.16 0.32 -0.88 16 6 C -0.12 -0.86 4.22 -26.73 -0.11 -0.97 16 7 C 0.14 1.27 2.44 -67.93 -0.17 1.10 16 8 H 0.09 0.98 5.78 -51.93 -0.30 0.68 16 9 C -0.17 -1.43 9.48 37.16 0.35 -1.08 16 10 N -0.70 -8.07 4.44 -54.29 -0.24 -8.32 16 11 C 0.52 7.72 7.85 -11.65 -0.09 7.63 16 12 O -0.53 -8.62 16.14 5.48 0.09 -8.54 16 13 C 0.48 8.72 7.85 -11.65 -0.09 8.63 16 14 O -0.52 -10.55 13.62 5.46 0.07 -10.47 16 15 N -0.58 -11.07 5.45 -10.45 -0.06 -11.12 16 16 C -0.07 -1.59 6.90 -83.92 -0.58 -2.17 16 17 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 19 N -0.14 -3.78 3.73 -11.40 -0.04 -3.82 16 20 C -0.32 -8.41 10.25 -14.82 -0.15 -8.57 16 21 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 22 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 23 N -0.77 -21.18 11.81 55.50 0.66 -20.52 16 24 Si 0.94 18.72 29.55 -169.99 -5.02 13.70 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 36 H 0.06 0.53 6.46 -51.93 -0.34 0.20 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.41 4.50 8.07 -40.82 -0.33 4.17 16 43 H 0.41 6.70 8.29 -40.82 -0.34 6.37 16 44 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 45 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.15 2.94 8.06 -52.48 -0.42 2.51 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -31.89 380.29 -6.36 -38.25 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.89 Total: 13.13 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.98 Total: -0.86 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.64 Total: -50.95 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.16 Total: -19.01 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.89 -6.36 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746421339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.710 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds