Wall clock time and date at job start Tue Mar 31 2020 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47745 * 2 1 4 4 H 1.08998 * 109.46648 * 54.99684 * 3 2 1 5 5 C 1.53001 * 109.47016 * 295.00283 * 3 2 1 6 6 C 1.52996 * 109.47571 * 175.00226 * 3 2 1 7 7 C 1.53004 * 109.46991 * 294.01345 * 6 3 2 8 8 H 1.09001 * 109.46891 * 57.05650 * 7 6 3 9 9 C 1.52999 * 109.47268 * 177.05504 * 7 6 3 10 10 N 1.46494 * 109.47377 * 297.05742 * 7 6 3 11 11 C 1.34774 * 120.00375 * 154.99776 * 10 7 6 12 12 O 1.21366 * 119.99822 * 359.97438 * 11 10 7 13 13 C 1.49312 * 120.00124 * 180.02562 * 11 10 7 14 14 O 1.21408 * 119.99781 * 359.97438 * 13 11 10 15 15 N 1.34774 * 120.00124 * 179.97438 * 13 11 10 16 16 C 1.40294 * 120.00108 * 179.97438 * 15 13 11 17 17 C 1.40719 * 126.09998 * 359.97438 * 16 15 13 18 18 N 1.30874 * 108.37150 * 179.77934 * 17 16 15 19 19 N 1.40061 * 108.44214 * 0.38174 * 18 17 16 20 20 C 1.37292 * 126.05982 * 179.88009 * 19 18 17 21 21 H 1.07992 * 120.00145 * 179.69275 * 20 19 18 22 22 C 1.39010 * 119.99830 * 359.96439 * 20 19 18 23 23 N 1.31290 * 120.00137 * 359.72597 * 22 20 19 24 24 Si 1.86801 * 120.00029 * 179.72423 * 22 20 19 25 25 H 1.48501 * 109.46774 * 90.00239 * 24 22 20 26 26 H 1.48500 * 109.46901 * 209.99716 * 24 22 20 27 27 H 1.48499 * 109.47339 * 330.00204 * 24 22 20 28 28 C 1.35788 * 126.09531 * 180.02562 * 16 15 13 29 29 H 1.09001 * 109.47190 * 59.99835 * 1 2 3 30 30 H 1.09000 * 109.47611 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46782 * 299.99978 * 1 2 3 32 32 H 1.09007 * 109.46777 * 239.99465 * 2 1 3 33 33 H 1.09001 * 109.47190 * 120.00165 * 2 1 3 34 34 H 1.09000 * 109.47099 * 305.80156 * 5 3 2 35 35 H 1.09001 * 109.47167 * 65.79712 * 5 3 2 36 36 H 1.09004 * 109.47254 * 185.80009 * 5 3 2 37 37 H 1.08999 * 109.47228 * 174.01440 * 6 3 2 38 38 H 1.08996 * 109.47126 * 54.01324 * 6 3 2 39 39 H 1.09001 * 109.47045 * 60.00241 * 9 7 6 40 40 H 1.08998 * 109.47228 * 180.02562 * 9 7 6 41 41 H 1.09004 * 109.46918 * 300.00217 * 9 7 6 42 42 H 0.97007 * 119.99531 * 335.00217 * 10 7 6 43 43 H 0.97007 * 120.00093 * 0.02562 * 15 13 11 44 44 H 1.07995 * 125.80977 * 0.02562 * 17 16 15 45 45 H 0.96999 * 120.00045 * 180.02562 * 23 22 20 46 46 H 1.07994 * 126.25917 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 3.9642 0.8963 1.4973 8 1 3.5477 -0.1030 1.6246 9 6 5.4896 0.8292 1.5954 10 7 3.4458 1.7786 2.5455 11 6 3.2159 1.2938 3.7818 12 8 3.4379 0.1260 4.0266 13 6 2.6869 2.1931 4.8499 14 8 2.4644 3.3611 4.6049 15 7 2.4565 1.7081 6.0861 16 6 1.9601 2.5532 7.0899 17 6 1.6593 3.9206 6.9487 18 7 1.2162 4.3661 8.0968 19 7 1.2244 3.3089 9.0154 20 6 0.8331 3.3771 10.3296 21 1 0.8753 2.4956 10.9520 22 6 0.3771 4.5795 10.8575 23 7 0.3258 5.6512 10.1008 24 14 -0.1626 4.6705 12.6435 25 1 1.0015 5.0243 13.4949 26 1 -1.2161 5.7068 12.7900 27 1 -0.7022 3.3529 13.0653 28 6 1.6850 2.1977 8.3712 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9825 1.5310 -2.1517 35 1 0.5499 2.2175 -1.3489 36 1 2.0852 3.1183 -1.3529 37 1 3.9371 2.4631 0.0191 38 1 3.9945 0.8169 -0.6553 39 1 5.9061 1.8284 1.4680 40 1 5.7740 0.4385 2.5723 41 1 5.8753 0.1726 0.8154 42 1 3.2679 2.7119 2.3496 43 1 2.6347 0.7749 6.2820 44 1 1.7709 4.5022 6.0456 45 1 0.0080 6.4903 10.4692 46 1 1.8080 1.2150 8.8019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746421341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:58 Heat of formation + Delta-G solvation = -30.561677 kcal Electronic energy + Delta-G solvation = -26978.960645 eV Core-core repulsion = 23097.126460 eV Total energy + Delta-G solvation = -3881.834185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.04791 -41.24832 -39.69053 -38.50518 -36.36232 -35.71946 -34.95710 -32.41767 -32.27352 -30.77887 -29.87198 -27.75973 -27.24227 -25.67958 -24.41580 -22.99471 -22.41148 -21.70545 -21.24008 -20.63247 -19.62898 -19.15085 -17.75922 -17.45628 -16.96956 -16.79744 -16.52896 -16.04216 -15.76503 -15.60008 -15.44038 -15.12379 -14.87257 -14.76010 -14.59884 -14.10792 -13.87300 -13.51828 -13.39129 -13.26687 -13.09777 -12.95633 -12.90834 -12.84700 -12.61525 -12.49604 -12.28112 -12.08959 -12.07021 -11.97096 -11.50043 -11.32275 -11.13049 -11.07135 -10.87955 -10.55357 -10.24220 -10.14666 -8.62860 -8.49347 -6.27078 0.30630 1.29233 1.33314 1.42648 1.58517 1.72506 2.05208 2.11945 2.53777 2.59889 2.95162 3.07168 3.53319 3.69671 3.86123 3.96103 4.21387 4.31490 4.36480 4.38950 4.51714 4.61904 4.68153 4.70487 4.77236 4.81478 4.88530 4.93908 4.96053 4.97835 5.06810 5.15860 5.20795 5.21546 5.24030 5.28327 5.30268 5.32257 5.41482 5.55255 5.56387 5.90229 6.03977 6.25461 6.49874 6.67206 6.83841 7.07981 7.40678 7.62177 8.49876 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.002345 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.906529 B =11939.264836 C =12295.164323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.098 4.098 4 H 0.053 0.947 5 C -0.144 4.144 6 C -0.114 4.114 7 C 0.134 3.866 8 H 0.085 0.915 9 C -0.162 4.162 10 N -0.681 5.681 11 C 0.525 3.475 12 O -0.542 6.542 13 C 0.484 3.516 14 O -0.544 6.544 15 N -0.584 5.584 16 C -0.056 4.056 17 C -0.049 4.049 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.353 4.353 21 H 0.142 0.858 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.245 1.245 28 C -0.076 4.076 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.090 0.910 42 H 0.416 0.584 43 H 0.423 0.577 44 H 0.176 0.824 45 H 0.278 0.722 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -10.773 -19.262 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.116 4.116 4 H 0.072 0.928 5 C -0.201 4.201 6 C -0.152 4.152 7 C 0.031 3.969 8 H 0.103 0.897 9 C -0.220 4.220 10 N -0.333 5.333 11 C 0.305 3.695 12 O -0.419 6.419 13 C 0.266 3.734 14 O -0.422 6.422 15 N -0.228 5.228 16 C -0.162 4.162 17 C -0.224 4.224 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.484 4.484 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.188 1.188 26 H -0.201 1.201 27 H -0.168 1.168 28 C -0.227 4.227 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.253 0.747 43 H 0.260 0.740 44 H 0.192 0.808 45 H 0.088 0.912 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.140 -9.556 -18.679 21.602 hybrid contribution -0.047 -0.339 0.427 0.547 sum 5.093 -9.895 -18.252 21.378 Atomic orbital electron populations 1.21819 0.96351 1.01586 1.01494 1.21632 0.95699 0.96407 1.02010 1.21198 0.95437 0.96325 0.98661 0.92799 1.21835 1.01257 1.00519 0.96536 1.21959 0.95474 1.03152 0.94600 1.21391 0.94624 0.94374 0.86476 0.89701 1.22175 0.94168 1.03210 1.02442 1.45892 1.63365 1.15400 1.08686 1.19625 0.78848 0.86937 0.84111 1.90727 1.52283 1.17278 1.81645 1.20395 0.81052 0.88141 0.83845 1.90642 1.52293 1.17979 1.81282 1.42104 1.59861 1.13193 1.07669 1.17298 1.17875 0.91508 0.89549 1.24244 1.06122 0.94027 0.98028 1.78152 1.26312 1.11377 0.98072 1.44843 1.35348 1.04693 1.08212 1.20655 1.44904 0.99965 0.82882 0.84105 1.26892 0.95176 0.93859 1.05815 1.70379 1.35384 1.00911 1.38171 0.84582 0.78264 0.79642 0.73667 1.18845 1.20104 1.16802 1.22004 1.13501 0.94636 0.92563 0.91750 0.92642 0.94428 0.90507 0.93109 0.91562 0.92988 0.92322 0.89978 0.87891 0.91517 0.94057 0.89121 0.74669 0.73989 0.80766 0.91231 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.67 71.98 0.70 -1.79 16 2 C -0.12 -1.76 5.28 30.59 0.16 -1.60 16 3 C -0.10 -1.36 2.32 -10.80 -0.03 -1.39 16 4 H 0.05 0.99 7.48 -2.39 -0.02 0.97 16 5 C -0.14 -1.68 8.80 71.98 0.63 -1.04 16 6 C -0.11 -1.28 4.23 30.59 0.13 -1.15 16 7 C 0.13 2.21 2.44 44.99 0.11 2.32 16 8 H 0.09 1.62 5.81 -2.39 -0.01 1.61 16 9 C -0.16 -2.41 9.48 71.98 0.68 -1.73 16 10 N -0.68 -14.98 4.35 -444.01 -1.93 -16.91 16 11 C 0.52 15.31 7.85 87.23 0.68 16.00 16 12 O -0.54 -17.09 16.14 -3.30 -0.05 -17.15 16 13 C 0.48 17.41 7.85 87.23 0.69 18.09 16 14 O -0.54 -22.17 13.62 -3.43 -0.05 -22.21 16 15 N -0.58 -21.87 5.45 -305.33 -1.66 -23.54 16 16 C -0.06 -2.61 6.90 37.82 0.26 -2.35 16 17 C -0.05 -2.62 10.85 85.44 0.93 -1.70 16 18 N -0.31 -18.34 10.39 -56.44 -0.59 -18.93 16 19 N -0.16 -9.03 3.73 -189.98 -0.71 -9.74 16 20 C -0.35 -18.58 10.25 84.02 0.86 -17.72 16 21 H 0.14 6.43 7.83 -2.91 -0.02 6.41 16 22 C -0.01 -0.27 5.50 84.96 0.47 0.19 16 23 N -0.82 -46.84 11.81 21.67 0.26 -46.58 16 24 Si 1.02 38.22 29.55 68.60 2.03 40.25 16 25 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 26 H -0.28 -10.23 7.11 99.48 0.71 -9.53 16 27 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 28 C -0.08 -3.57 11.50 83.41 0.96 -2.62 16 29 H 0.06 0.90 6.70 -2.39 -0.02 0.88 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.89 6.33 -2.39 -0.02 0.88 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.66 6.86 -2.39 -0.02 0.65 16 36 H 0.06 0.64 8.14 -2.38 -0.02 0.63 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 0.93 8.14 -2.38 -0.02 0.92 16 42 H 0.42 8.67 8.02 -92.70 -0.74 7.92 16 43 H 0.42 13.41 8.29 -92.70 -0.77 12.64 16 44 H 0.18 9.18 5.92 -2.91 -0.02 9.17 16 45 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 46 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -71.69 380.29 4.03 -67.66 By element: Atomic # 1 Polarization: 44.13 SS G_CDS: -0.50 Total: 43.63 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 7.23 Total: 3.52 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -4.63 Total: -115.70 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.10 Total: -39.36 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -71.69 4.03 -67.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746421341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.099 kcal (2) G-P(sol) polarization free energy of solvation -71.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds