Wall clock time and date at job start Tue Mar 31 2020 12:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 H 1.08994 * 109.47447 * 305.00087 * 3 2 1 5 5 C 1.53002 * 109.47248 * 64.99824 * 3 2 1 6 6 C 1.53001 * 109.47460 * 184.99855 * 3 2 1 7 7 N 1.46492 * 109.47393 * 174.99946 * 6 3 2 8 8 C 1.46504 * 120.00104 * 89.99872 * 7 6 3 9 9 C 1.52998 * 109.47031 * 94.36835 * 8 7 6 10 10 C 1.34776 * 120.00366 * 270.00241 * 7 6 3 11 11 O 1.21366 * 119.99769 * 5.33393 * 10 7 6 12 12 C 1.49302 * 120.00422 * 185.33330 * 10 7 6 13 13 O 1.21412 * 119.99946 * 5.52317 * 12 10 7 14 14 N 1.34775 * 120.00321 * 185.52047 * 12 10 7 15 15 C 1.40295 * 120.00264 * 180.02562 * 14 12 10 16 16 C 1.40719 * 126.09891 * 359.68507 * 15 14 12 17 17 N 1.30883 * 108.37681 * 179.81877 * 16 15 14 18 18 N 1.40059 * 108.43210 * 0.44789 * 17 16 15 19 19 C 1.37296 * 126.05339 * 179.69640 * 18 17 16 20 20 H 1.08002 * 120.00006 * 180.02562 * 19 18 17 21 21 C 1.39009 * 120.00175 * 0.02562 * 19 18 17 22 22 N 1.31277 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00076 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47157 * 90.00267 * 23 21 19 25 25 H 1.48499 * 109.46742 * 210.00159 * 23 21 19 26 26 H 1.48502 * 109.47205 * 330.00253 * 23 21 19 27 27 C 1.35787 * 126.10066 * 180.02562 * 15 14 12 28 28 H 1.08995 * 109.47265 * 300.00040 * 1 2 3 29 29 H 1.08994 * 109.47213 * 59.99999 * 1 2 3 30 30 H 1.09003 * 109.46512 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47406 * 240.00481 * 2 1 3 32 32 H 1.08999 * 109.47263 * 119.99525 * 2 1 3 33 33 H 1.09002 * 109.47452 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47149 * 300.00312 * 5 3 2 35 35 H 1.08999 * 109.47071 * 60.00055 * 5 3 2 36 36 H 1.09004 * 109.46726 * 54.99644 * 6 3 2 37 37 H 1.09002 * 109.46990 * 295.00024 * 6 3 2 38 38 H 1.09000 * 109.47308 * 214.36558 * 8 7 6 39 39 H 1.09000 * 109.47166 * 334.36756 * 8 7 6 40 40 H 1.09000 * 109.47210 * 59.99947 * 9 8 7 41 41 H 1.09000 * 109.47201 * 180.02562 * 9 8 7 42 42 H 1.09006 * 109.47247 * 300.00127 * 9 8 7 43 43 H 0.97002 * 120.00144 * 0.02562 * 14 12 10 44 44 H 1.08004 * 125.81405 * 359.97438 * 16 15 14 45 45 H 0.97003 * 120.00108 * 179.97438 * 22 21 19 46 46 H 1.07997 * 126.25015 * 359.95829 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4445 -0.1257 7 7 4.0432 2.8239 -0.2458 8 6 4.3863 3.5875 0.9565 9 6 5.8867 3.4628 1.2290 10 6 4.1676 3.3906 -1.4622 11 8 3.7927 2.7943 -2.4506 12 6 4.7665 4.7519 -1.5940 13 8 5.2327 5.3068 -0.6200 14 7 4.7896 5.3646 -2.7942 15 6 5.3529 6.6436 -2.9181 16 6 5.9212 7.4035 -1.8790 17 7 6.3427 8.5369 -2.3796 18 7 6.0528 8.5509 -3.7498 19 6 6.3337 9.5710 -4.6248 20 1 6.0651 9.4780 -5.6667 21 6 6.9639 10.7234 -4.1696 22 7 7.2909 10.8361 -2.9033 23 14 7.3455 12.1115 -5.3600 24 1 6.1992 13.0545 -5.4045 25 1 8.5620 12.8322 -4.9063 26 1 7.5785 11.5513 -6.7154 27 6 5.4411 7.3716 -4.0609 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.9989 3.1541 1.3076 34 1 0.5489 2.1252 1.3969 35 1 2.0698 1.5876 2.1492 36 1 3.8571 0.8801 -1.0113 37 1 4.0029 0.9837 0.7597 38 1 4.1303 4.6363 0.8062 39 1 3.8287 3.1957 1.8072 40 1 6.4442 3.8545 0.3782 41 1 6.1419 4.0305 2.1237 42 1 6.1427 2.4139 1.3793 43 1 4.4169 4.9214 -3.5724 44 1 5.9988 7.1017 -0.8449 45 1 7.7310 11.6401 -2.5857 46 1 5.0917 7.0717 -5.0377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782656801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:19 Heat of formation + Delta-G solvation = 11.892698 kcal Electronic energy + Delta-G solvation = -27475.159233 eV Core-core repulsion = 23595.166008 eV Total energy + Delta-G solvation = -3879.993225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.75734 -39.61383 -38.16009 -37.20233 -35.54030 -34.10661 -33.14384 -30.97512 -30.32417 -29.76190 -28.12261 -27.19920 -25.41608 -24.43726 -23.38611 -22.40259 -21.00634 -20.36436 -19.55971 -19.23540 -17.72278 -17.26209 -16.60401 -15.89929 -15.63502 -15.48126 -15.14549 -14.91357 -14.79879 -14.30047 -13.96550 -13.76577 -13.52237 -13.34727 -13.16383 -12.96613 -12.92908 -12.65589 -12.32673 -12.09316 -11.80364 -11.72127 -11.52265 -11.44810 -11.36263 -11.29418 -11.05714 -10.92799 -10.88582 -10.74865 -10.70540 -10.55789 -10.14240 -9.22105 -8.93849 -8.83413 -8.76269 -8.12873 -6.76796 -6.60742 -4.27761 1.69145 2.56904 2.93038 3.03472 3.08319 3.32864 3.68563 3.71792 3.86842 4.37488 4.52293 4.58035 4.63528 4.71355 4.95883 4.97963 5.04728 5.04954 5.22952 5.27386 5.34698 5.37850 5.53577 5.56420 5.59289 5.70846 5.76349 5.78552 5.82694 5.91081 6.07364 6.14428 6.15315 6.20316 6.36004 6.36657 6.53320 6.77563 6.88701 6.97470 7.16132 7.17897 7.73810 7.84488 8.12862 8.19019 8.50774 8.70518 9.31211 9.60053 10.35066 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.002448 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.410873 B =11433.484268 C =11915.306338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.109 4.109 4 H 0.077 0.923 5 C -0.152 4.152 6 C 0.119 3.881 7 N -0.585 5.585 8 C 0.100 3.900 9 C -0.161 4.161 10 C 0.513 3.487 11 O -0.530 6.530 12 C 0.482 3.518 13 O -0.513 6.513 14 N -0.585 5.585 15 C -0.067 4.067 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.078 4.078 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.408 0.592 44 H 0.178 0.822 45 H 0.276 0.724 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.598 -16.752 6.617 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.129 4.129 4 H 0.095 0.905 5 C -0.209 4.209 6 C -0.003 4.003 7 N -0.318 5.318 8 C -0.022 4.022 9 C -0.219 4.219 10 C 0.296 3.704 11 O -0.407 6.407 12 C 0.263 3.737 13 O -0.391 6.391 14 N -0.227 5.227 15 C -0.173 4.173 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.230 4.230 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.243 0.757 44 H 0.195 0.805 45 H 0.086 0.914 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.768 -15.393 7.205 18.687 hybrid contribution -0.436 -0.491 -1.099 1.280 sum -8.203 -15.884 6.106 18.892 Atomic orbital electron populations 1.21799 0.95732 1.01427 1.02027 1.21489 0.96128 0.95786 1.02005 1.21566 0.95377 0.96706 0.99212 0.90494 1.21998 1.01419 1.00903 0.96586 1.21618 0.93758 0.82004 1.02968 1.47808 1.63654 1.14020 1.06279 1.22055 0.96390 0.98233 0.85524 1.22124 0.96203 1.00457 1.03123 1.20334 0.79315 0.87259 0.83508 1.90717 1.48563 1.64364 1.37018 1.19654 0.83341 0.86563 0.84156 1.90608 1.46334 1.65532 1.36633 1.42179 1.55174 1.15579 1.09782 1.17246 1.16665 0.88100 0.95315 1.24143 1.03607 0.92888 0.99604 1.78259 1.24183 1.18640 0.88079 1.44553 1.30954 1.09020 1.06025 1.19915 1.40381 0.94015 0.91083 0.86480 1.25661 0.95634 0.99063 0.96773 1.70204 1.29175 1.26548 1.13489 0.85809 0.78575 0.79865 0.79820 1.19534 1.20049 1.18747 1.21310 1.12908 0.90886 0.97874 0.92513 0.92697 0.92897 0.91781 0.91968 0.92117 0.92479 0.92744 0.89849 0.90267 0.87691 0.90910 0.90941 0.91699 0.93825 0.75730 0.80519 0.91376 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.01 16 3 C -0.11 -0.99 2.59 -90.62 -0.24 -1.23 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -1.24 7.93 37.16 0.29 -0.95 16 6 C 0.12 1.18 4.84 -4.05 -0.02 1.16 16 7 N -0.58 -7.24 2.31 -174.25 -0.40 -7.65 16 8 C 0.10 1.15 4.61 -4.04 -0.02 1.13 16 9 C -0.16 -1.90 9.65 37.16 0.36 -1.54 16 10 C 0.51 7.94 7.69 -11.66 -0.09 7.85 16 11 O -0.53 -8.92 16.12 5.48 0.09 -8.83 16 12 C 0.48 8.58 7.61 -11.66 -0.09 8.49 16 13 O -0.51 -9.69 8.52 5.44 0.05 -9.65 16 14 N -0.58 -10.99 5.45 -10.46 -0.06 -11.05 16 15 C -0.07 -1.54 6.90 -83.92 -0.58 -2.12 16 16 C -0.03 -0.68 10.84 -17.02 -0.18 -0.86 16 17 N -0.26 -7.41 10.39 30.81 0.32 -7.09 16 18 N -0.14 -3.75 3.73 -11.40 -0.04 -3.80 16 19 C -0.32 -8.39 10.25 -14.82 -0.15 -8.55 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 22 N -0.77 -21.09 11.81 55.50 0.66 -20.43 16 23 Si 0.94 18.67 29.55 -169.99 -5.02 13.65 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 28 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.56 5.97 -51.93 -0.31 0.25 16 34 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.90 7.50 -51.93 -0.39 0.52 16 37 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.11 1.43 5.87 -51.93 -0.30 1.13 16 39 H 0.07 0.66 6.18 -51.93 -0.32 0.34 16 40 H 0.07 1.07 6.42 -51.93 -0.33 0.74 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.41 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.18 4.31 5.92 -52.48 -0.31 4.00 16 45 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -30.99 370.88 -6.37 -37.36 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.76 Total: 11.19 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.78 Total: 0.71 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.47 Total: -50.01 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.13 Total: -18.48 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.99 -6.37 -37.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782656801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.255 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds