Wall clock time and date at job start Tue Mar 31 2020 12:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 H 1.08994 * 109.47447 * 305.00087 * 3 2 1 5 5 C 1.53002 * 109.47248 * 64.99824 * 3 2 1 6 6 C 1.53001 * 109.47460 * 184.99855 * 3 2 1 7 7 N 1.46492 * 109.47393 * 174.99946 * 6 3 2 8 8 C 1.46504 * 120.00104 * 89.99872 * 7 6 3 9 9 C 1.52998 * 109.47031 * 94.36835 * 8 7 6 10 10 C 1.34776 * 120.00366 * 270.00241 * 7 6 3 11 11 O 1.21366 * 119.99769 * 5.33393 * 10 7 6 12 12 C 1.49302 * 120.00422 * 185.33330 * 10 7 6 13 13 O 1.21412 * 119.99946 * 5.52317 * 12 10 7 14 14 N 1.34775 * 120.00321 * 185.52047 * 12 10 7 15 15 C 1.40295 * 120.00264 * 180.02562 * 14 12 10 16 16 C 1.40719 * 126.09891 * 359.68507 * 15 14 12 17 17 N 1.30883 * 108.37681 * 179.81877 * 16 15 14 18 18 N 1.40059 * 108.43210 * 0.44789 * 17 16 15 19 19 C 1.37296 * 126.05339 * 179.69640 * 18 17 16 20 20 H 1.08002 * 120.00006 * 180.02562 * 19 18 17 21 21 C 1.39009 * 120.00175 * 0.02562 * 19 18 17 22 22 N 1.31277 * 119.99824 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00076 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47157 * 90.00267 * 23 21 19 25 25 H 1.48499 * 109.46742 * 210.00159 * 23 21 19 26 26 H 1.48502 * 109.47205 * 330.00253 * 23 21 19 27 27 C 1.35787 * 126.10066 * 180.02562 * 15 14 12 28 28 H 1.08995 * 109.47265 * 300.00040 * 1 2 3 29 29 H 1.08994 * 109.47213 * 59.99999 * 1 2 3 30 30 H 1.09003 * 109.46512 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47406 * 240.00481 * 2 1 3 32 32 H 1.08999 * 109.47263 * 119.99525 * 2 1 3 33 33 H 1.09002 * 109.47452 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47149 * 300.00312 * 5 3 2 35 35 H 1.08999 * 109.47071 * 60.00055 * 5 3 2 36 36 H 1.09004 * 109.46726 * 54.99644 * 6 3 2 37 37 H 1.09002 * 109.46990 * 295.00024 * 6 3 2 38 38 H 1.09000 * 109.47308 * 214.36558 * 8 7 6 39 39 H 1.09000 * 109.47166 * 334.36756 * 8 7 6 40 40 H 1.09000 * 109.47210 * 59.99947 * 9 8 7 41 41 H 1.09000 * 109.47201 * 180.02562 * 9 8 7 42 42 H 1.09006 * 109.47247 * 300.00127 * 9 8 7 43 43 H 0.97002 * 120.00144 * 0.02562 * 14 12 10 44 44 H 1.08004 * 125.81405 * 359.97438 * 16 15 14 45 45 H 0.97003 * 120.00108 * 179.97438 * 22 21 19 46 46 H 1.07997 * 126.25015 * 359.95829 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4445 -0.1257 7 7 4.0432 2.8239 -0.2458 8 6 4.3863 3.5875 0.9565 9 6 5.8867 3.4628 1.2290 10 6 4.1676 3.3906 -1.4622 11 8 3.7927 2.7943 -2.4506 12 6 4.7665 4.7519 -1.5940 13 8 5.2327 5.3068 -0.6200 14 7 4.7896 5.3646 -2.7942 15 6 5.3529 6.6436 -2.9181 16 6 5.9212 7.4035 -1.8790 17 7 6.3427 8.5369 -2.3796 18 7 6.0528 8.5509 -3.7498 19 6 6.3337 9.5710 -4.6248 20 1 6.0651 9.4780 -5.6667 21 6 6.9639 10.7234 -4.1696 22 7 7.2909 10.8361 -2.9033 23 14 7.3455 12.1115 -5.3600 24 1 6.1992 13.0545 -5.4045 25 1 8.5620 12.8322 -4.9063 26 1 7.5785 11.5513 -6.7154 27 6 5.4411 7.3716 -4.0609 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.9989 3.1541 1.3076 34 1 0.5489 2.1252 1.3969 35 1 2.0698 1.5876 2.1492 36 1 3.8571 0.8801 -1.0113 37 1 4.0029 0.9837 0.7597 38 1 4.1303 4.6363 0.8062 39 1 3.8287 3.1957 1.8072 40 1 6.4442 3.8545 0.3782 41 1 6.1419 4.0305 2.1237 42 1 6.1427 2.4139 1.3793 43 1 4.4169 4.9214 -3.5724 44 1 5.9988 7.1017 -0.8449 45 1 7.7310 11.6401 -2.5857 46 1 5.0917 7.0717 -5.0377 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782656801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:18 Heat of formation + Delta-G solvation = -7.209514 kcal Electronic energy + Delta-G solvation = -27475.987567 eV Core-core repulsion = 23595.166008 eV Total energy + Delta-G solvation = -3880.821560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.15880 -41.32271 -39.55780 -38.25438 -36.60134 -35.67279 -34.89146 -32.28551 -31.83739 -30.59536 -29.85803 -28.18409 -27.03364 -25.73799 -24.23222 -23.65615 -22.83366 -21.38130 -21.13985 -20.54227 -19.37441 -18.65465 -17.82805 -17.45072 -17.07896 -16.74297 -16.59035 -15.97153 -15.92134 -15.59381 -15.35267 -15.25288 -14.84089 -14.63785 -14.48855 -14.18782 -13.75226 -13.61509 -13.50815 -13.34390 -13.13479 -12.94052 -12.86185 -12.75305 -12.61461 -12.25839 -12.21569 -12.10147 -12.08380 -11.94387 -11.58878 -11.52858 -11.39993 -11.02640 -10.85961 -10.27616 -10.13019 -9.80246 -8.59469 -8.48732 -6.25850 0.32346 1.29568 1.31382 1.41917 1.58144 1.72526 2.05521 2.11215 2.46826 2.55481 2.85936 3.07673 3.45857 3.85177 3.92409 4.02854 4.14252 4.36482 4.40183 4.43151 4.53448 4.53557 4.62042 4.66726 4.73864 4.81737 4.84733 4.86502 4.97202 4.99237 5.05798 5.13931 5.15135 5.20841 5.22772 5.25571 5.29771 5.43316 5.49431 5.54796 5.56977 5.91673 6.00101 6.23385 6.43666 6.68073 6.79115 7.11304 7.41735 7.64197 8.50468 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.002448 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.410873 B =11433.484268 C =11915.306338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.048 0.952 5 C -0.150 4.150 6 C 0.115 3.885 7 N -0.571 5.571 8 C 0.100 3.900 9 C -0.156 4.156 10 C 0.516 3.484 11 O -0.545 6.545 12 C 0.481 3.519 13 O -0.522 6.522 14 N -0.587 5.587 15 C -0.053 4.053 16 C -0.046 4.046 17 N -0.307 5.307 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.140 0.860 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.246 1.246 27 C -0.079 4.079 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.420 0.580 44 H 0.179 0.821 45 H 0.278 0.722 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -18.530 6.671 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.067 0.933 5 C -0.207 4.207 6 C -0.006 4.006 7 N -0.303 5.303 8 C -0.021 4.021 9 C -0.214 4.214 10 C 0.298 3.702 11 O -0.424 6.424 12 C 0.264 3.736 13 O -0.399 6.399 14 N -0.232 5.232 15 C -0.159 4.159 16 C -0.221 4.221 17 N -0.139 5.139 18 N 0.068 4.932 19 C -0.484 4.484 20 H 0.157 0.843 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.169 1.169 27 C -0.229 4.229 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.257 0.743 44 H 0.195 0.805 45 H 0.087 0.913 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.640 -17.227 7.282 20.603 hybrid contribution -0.252 -0.142 -0.983 1.025 sum -8.893 -17.369 6.299 20.505 Atomic orbital electron populations 1.21802 0.95524 1.01996 1.01682 1.21468 0.96271 0.94527 1.02731 1.21498 0.94454 0.97711 0.98738 0.93302 1.21987 1.01890 1.00240 0.96606 1.21894 0.94541 0.80113 1.04058 1.47909 1.62055 1.14949 1.05362 1.22103 0.96797 0.97167 0.86060 1.22063 0.95684 1.01701 1.02001 1.19838 0.79698 0.86123 0.84543 1.90715 1.49624 1.64324 1.37715 1.20255 0.82423 0.87437 0.83522 1.90615 1.46193 1.66137 1.36995 1.42134 1.55763 1.14420 1.10904 1.17276 1.15094 0.89198 0.94313 1.24266 1.04495 0.93111 1.00259 1.78151 1.25894 1.20265 0.89601 1.44819 1.32293 1.10384 1.05711 1.20624 1.41188 0.94529 0.92100 0.84281 1.26867 0.94672 1.01624 0.98547 1.70371 1.30792 1.27637 1.16019 0.84594 0.78173 0.75794 0.77675 1.18862 1.20075 1.16890 1.21983 1.11574 0.89851 0.99525 0.92047 0.93893 0.91886 0.92142 0.90132 0.93363 0.92083 0.90741 0.90634 0.87150 0.90059 0.87422 0.94368 0.90820 0.91748 0.74316 0.80459 0.91255 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 71.98 0.70 -1.16 16 2 C -0.11 -1.39 5.40 30.59 0.17 -1.22 16 3 C -0.10 -1.68 2.59 -10.79 -0.03 -1.71 16 4 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.15 -2.05 7.93 71.98 0.57 -1.48 16 6 C 0.12 2.00 4.84 86.38 0.42 2.42 16 7 N -0.57 -13.28 2.31 -823.57 -1.90 -15.18 16 8 C 0.10 2.13 4.61 86.38 0.40 2.53 16 9 C -0.16 -3.46 9.65 71.98 0.69 -2.76 16 10 C 0.52 15.67 7.69 87.22 0.67 16.34 16 11 O -0.55 -18.02 16.12 -3.30 -0.05 -18.07 16 12 C 0.48 17.22 7.61 87.22 0.66 17.89 16 13 O -0.52 -20.08 8.52 -3.44 -0.03 -20.11 16 14 N -0.59 -22.07 5.45 -305.33 -1.66 -23.73 16 15 C -0.05 -2.43 6.90 37.82 0.26 -2.17 16 16 C -0.05 -2.41 10.84 85.44 0.93 -1.49 16 17 N -0.31 -18.17 10.39 -56.43 -0.59 -18.76 16 18 N -0.16 -9.06 3.73 -189.98 -0.71 -9.77 16 19 C -0.35 -18.63 10.25 84.02 0.86 -17.77 16 20 H 0.14 6.40 7.83 -2.91 -0.02 6.37 16 21 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 22 N -0.82 -46.69 11.81 21.66 0.26 -46.43 16 23 Si 1.02 38.29 29.55 68.60 2.03 40.32 16 24 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 25 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 27 C -0.08 -3.69 11.50 83.41 0.96 -2.73 16 28 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.78 5.97 -2.39 -0.01 0.77 16 34 H 0.06 0.80 6.56 -2.39 -0.02 0.78 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.49 7.50 -2.38 -0.02 1.47 16 37 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 38 H 0.08 2.18 5.87 -2.39 -0.01 2.17 16 39 H 0.11 1.59 6.18 -2.39 -0.01 1.58 16 40 H 0.04 1.11 6.42 -2.39 -0.02 1.10 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.42 13.64 8.31 -92.71 -0.77 12.87 16 44 H 0.18 9.05 5.92 -2.91 -0.02 9.04 16 45 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.18 6.99 8.06 -2.91 -0.02 6.97 16 Total: -1.00 -70.39 370.88 5.30 -65.09 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: 0.23 Total: 39.75 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 7.72 Total: 6.89 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.60 Total: -113.87 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.08 Total: -38.19 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -70.39 5.30 -65.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782656801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.880 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds