Wall clock time and date at job start Tue Mar 31 2020 13:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47219 * 2 1 4 4 N 1.46497 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.35223 * 125.99455 * 124.99834 * 4 3 2 6 6 C 1.35855 * 107.64299 * 180.02562 * 5 4 3 7 7 N 1.40479 * 126.11517 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99940 * 180.02562 * 7 6 5 9 9 O 1.21403 * 120.00134 * 0.02562 * 8 7 6 10 10 C 1.49331 * 120.00025 * 179.72851 * 8 7 6 11 11 O 1.21367 * 119.99532 * 355.15451 * 10 8 7 12 12 N 1.34776 * 120.00033 * 175.15566 * 10 8 7 13 13 C 1.46494 * 119.99887 * 3.93804 * 12 10 8 14 14 C 1.50704 * 109.47434 * 83.04338 * 13 12 10 15 15 H 1.08005 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00371 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00002 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47061 * 90.00046 * 18 16 14 20 20 H 1.48505 * 109.46905 * 210.00226 * 18 16 14 21 21 H 1.48504 * 109.46967 * 330.00146 * 18 16 14 22 22 C 1.46496 * 119.99789 * 183.93791 * 12 10 8 23 23 C 1.53004 * 109.46821 * 114.94066 * 22 12 10 24 24 C 1.53001 * 109.46762 * 234.93878 * 22 12 10 25 25 C 1.40342 * 107.76890 * 0.22771 * 6 5 4 26 26 N 1.30822 * 108.20711 * 359.61588 * 25 6 5 27 27 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47053 * 299.99862 * 1 2 3 29 29 H 1.09001 * 109.47427 * 59.99682 * 1 2 3 30 30 H 1.09001 * 109.47053 * 240.00138 * 2 1 3 31 31 H 1.09005 * 109.47031 * 119.99690 * 2 1 3 32 32 H 1.09001 * 109.47199 * 59.99590 * 3 2 1 33 33 H 1.09002 * 109.46687 * 300.00292 * 3 2 1 34 34 H 1.08001 * 126.17987 * 0.04063 * 5 4 3 35 35 H 0.97004 * 120.00286 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.47229 * 203.04248 * 13 12 10 37 37 H 1.09005 * 109.47251 * 323.04080 * 13 12 10 38 38 H 0.96993 * 120.00616 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47076 * 354.94113 * 22 12 10 40 40 H 1.08999 * 109.47257 * 60.00158 * 23 22 12 41 41 H 1.09003 * 109.46982 * 179.97438 * 23 22 12 42 42 H 1.08995 * 109.47456 * 299.99385 * 23 22 12 43 43 H 1.09000 * 109.47388 * 60.00340 * 24 22 12 44 44 H 1.09003 * 109.46725 * 179.97438 * 24 22 12 45 45 H 1.09000 * 109.47175 * 299.99549 * 24 22 12 46 46 H 1.07993 * 125.89530 * 179.76834 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2993 2.0701 -0.8971 6 6 5.5889 1.8243 -0.5476 7 7 6.7318 2.2921 -1.2172 8 6 7.9588 1.9710 -0.7611 9 8 8.0763 1.2771 0.2281 10 6 9.1737 2.4632 -1.4764 11 8 9.0581 3.0777 -2.5166 12 7 10.3985 2.2250 -0.9669 13 6 10.5432 1.4100 0.2418 14 6 10.5272 -0.0499 -0.1319 15 1 10.4195 -0.3414 -1.1662 16 6 10.6488 -1.0134 0.8468 17 7 10.6344 -2.2874 0.5208 18 14 10.8343 -0.5092 2.6360 19 1 9.4917 -0.3984 3.2607 20 1 11.6335 -1.5316 3.3580 21 1 11.5253 0.8031 2.7113 22 6 11.5851 2.7813 -1.6217 23 6 12.2545 3.7934 -0.6898 24 6 12.5681 1.6528 -1.9396 25 6 5.5751 1.0146 0.5986 26 7 4.3285 0.7919 0.9268 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9684 2.6605 -1.7387 35 1 6.6380 2.8462 -2.0079 36 1 11.4875 1.6495 0.7307 37 1 9.7181 1.6199 0.9225 38 1 10.7203 -2.9653 1.2092 39 1 11.2906 3.2779 -2.5462 40 1 12.5489 3.2968 0.2347 41 1 13.1376 4.2070 -1.1769 42 1 11.5542 4.5973 -0.4634 43 1 12.0913 0.9317 -2.6035 44 1 13.4508 2.0666 -2.4273 45 1 12.8626 1.1562 -1.0151 46 1 6.4437 0.6419 1.1210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783398874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:04 Heat of formation + Delta-G solvation = 25.102614 kcal Electronic energy + Delta-G solvation = -27855.130266 eV Core-core repulsion = 23975.709865 eV Total energy + Delta-G solvation = -3879.420400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27475 -40.07146 -38.07679 -36.24928 -35.56977 -34.15737 -32.69562 -31.44415 -31.35088 -29.20144 -27.85095 -26.70975 -26.38267 -24.39189 -22.54931 -22.48467 -21.35784 -21.03537 -19.80893 -18.67436 -17.41957 -16.92425 -16.89085 -16.47939 -15.89886 -15.36233 -15.17545 -14.84011 -14.63552 -14.18469 -13.93190 -13.73879 -13.64135 -13.32323 -13.21594 -12.73849 -12.59875 -12.47239 -12.43105 -12.20861 -11.86864 -11.77549 -11.71695 -11.66066 -11.17091 -11.06429 -10.88305 -10.69942 -10.56444 -10.48589 -10.38741 -10.18622 -10.07941 -9.42197 -9.27269 -8.71348 -8.41297 -7.88338 -7.50437 -6.00747 -3.97617 1.73509 2.18783 2.41215 2.96657 3.06846 3.35993 3.40713 3.44541 3.93341 4.08980 4.36697 4.47688 4.59268 4.75952 4.88818 4.95501 5.03239 5.14672 5.29715 5.32791 5.35745 5.38025 5.53613 5.66045 5.67794 5.69342 5.75400 5.86544 5.99100 5.99307 6.05578 6.21588 6.31043 6.35099 6.58690 6.60174 6.93143 6.99608 7.01501 7.13539 7.22831 7.54042 7.63958 7.84520 7.97267 8.31850 8.53305 8.66377 9.01060 9.59994 11.12520 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.003700 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.876493 B = 7565.475048 C = 9001.278875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.142 3.858 4 N -0.374 5.374 5 C 0.010 3.990 6 C 0.012 3.988 7 N -0.629 5.629 8 C 0.500 3.500 9 O -0.456 6.456 10 C 0.515 3.485 11 O -0.560 6.560 12 N -0.549 5.549 13 C 0.190 3.810 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.079 3.921 17 N -0.898 5.898 18 Si 0.872 3.128 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.268 1.268 22 C 0.131 3.869 23 C -0.160 4.160 24 C -0.152 4.152 25 C 0.057 3.943 26 N -0.286 5.286 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.415 0.585 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 11.184 -2.829 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.021 3.979 4 N -0.159 5.159 5 C -0.137 4.137 6 C -0.093 4.093 7 N -0.277 5.277 8 C 0.281 3.719 9 O -0.326 6.326 10 C 0.297 3.703 11 O -0.441 6.441 12 N -0.279 5.279 13 C 0.070 3.930 14 C -0.550 4.550 15 H 0.090 0.910 16 C -0.123 4.123 17 N -0.537 5.537 18 Si 0.699 3.301 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.193 1.193 22 C 0.028 3.972 23 C -0.218 4.218 24 C -0.210 4.210 25 C -0.131 4.131 26 N -0.108 5.108 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.191 0.809 35 H 0.251 0.749 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -13.849 10.236 -1.719 17.307 hybrid contribution 0.599 0.636 -0.105 0.880 sum -13.251 10.872 -1.824 17.237 Atomic orbital electron populations 1.21707 0.94630 1.02442 1.01926 1.21830 0.96110 0.95687 1.04078 1.21686 0.74000 0.98775 1.03430 1.48218 1.05984 1.40248 1.21482 1.21704 0.89564 1.03927 0.98545 1.17757 0.86020 1.06600 0.98950 1.42469 1.02743 1.51960 1.30523 1.20230 0.83999 0.81965 0.85662 1.90728 1.84763 1.32998 1.24093 1.19646 0.84811 0.80797 0.85051 1.90649 1.86681 1.43282 1.23470 1.48014 1.03852 1.47724 1.28301 1.20442 0.98444 0.91419 0.82658 1.21094 1.50268 0.87813 0.95829 0.90971 1.24721 0.94508 0.94637 0.98413 1.69885 1.50608 0.99719 1.33499 0.86925 0.78784 0.78353 0.86020 1.19691 1.21522 1.19277 1.21079 0.85269 0.94487 0.96332 1.22151 1.00315 0.98756 1.00540 1.22046 0.97564 0.98041 1.03321 1.24693 0.95560 0.97164 0.95647 1.77371 1.01242 1.18671 1.13503 0.92008 0.92380 0.92538 0.91302 0.90235 0.90022 0.88934 0.80854 0.74863 0.95292 0.91575 0.92733 0.88973 0.91848 0.91731 0.92816 0.92050 0.92820 0.90675 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.14 -1.21 6.12 -26.73 -0.16 -1.37 16 3 C 0.14 1.22 6.51 -4.04 -0.03 1.20 16 4 N -0.37 -4.85 3.69 -61.15 -0.23 -5.08 16 5 C 0.01 0.13 11.49 -16.91 -0.19 -0.07 16 6 C 0.01 0.19 6.90 -83.95 -0.58 -0.39 16 7 N -0.63 -10.17 5.45 -10.48 -0.06 -10.23 16 8 C 0.50 9.91 7.74 -11.64 -0.09 9.82 16 9 O -0.46 -10.27 9.54 5.45 0.05 -10.22 16 10 C 0.51 10.47 7.66 -11.64 -0.09 10.38 16 11 O -0.56 -11.35 15.82 5.48 0.09 -11.26 16 12 N -0.55 -11.26 2.37 -168.02 -0.40 -11.66 16 13 C 0.19 4.38 2.98 -5.19 -0.02 4.37 16 14 C -0.51 -13.90 8.02 -34.44 -0.28 -14.17 16 15 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 16 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 17 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 18 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 22 C 0.13 2.29 3.22 -67.93 -0.22 2.07 16 23 C -0.16 -2.31 9.26 37.16 0.34 -1.97 16 24 C -0.15 -2.63 8.66 37.16 0.32 -2.31 16 25 C 0.06 1.03 10.84 -17.19 -0.19 0.84 16 26 N -0.29 -4.80 12.40 30.72 0.38 -4.42 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.42 5.64 8.30 -40.82 -0.34 5.30 16 36 H 0.03 0.66 5.54 -51.93 -0.29 0.37 16 37 H 0.07 1.58 4.81 -51.93 -0.25 1.34 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 39 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 40 H 0.06 0.96 6.92 -51.93 -0.36 0.60 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.44 7.09 -51.93 -0.37 1.07 16 46 H 0.21 4.24 5.92 -52.49 -0.31 3.93 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -33.26 375.64 -6.23 -39.49 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.93 Total: 7.50 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.90 Total: 9.99 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.47 Total: -57.86 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: 0.14 Total: -21.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.26 -6.23 -39.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783398874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.594 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds