Wall clock time and date at job start Tue Mar 31 2020 13:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47219 * 2 1 4 4 N 1.46497 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.35223 * 125.99455 * 124.99834 * 4 3 2 6 6 C 1.35855 * 107.64299 * 180.02562 * 5 4 3 7 7 N 1.40479 * 126.11517 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99940 * 180.02562 * 7 6 5 9 9 O 1.21403 * 120.00134 * 0.02562 * 8 7 6 10 10 C 1.49331 * 120.00025 * 179.72851 * 8 7 6 11 11 O 1.21367 * 119.99532 * 355.15451 * 10 8 7 12 12 N 1.34776 * 120.00033 * 175.15566 * 10 8 7 13 13 C 1.46494 * 119.99887 * 3.93804 * 12 10 8 14 14 C 1.50704 * 109.47434 * 83.04338 * 13 12 10 15 15 H 1.08005 * 119.99588 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00289 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00371 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00002 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47061 * 90.00046 * 18 16 14 20 20 H 1.48505 * 109.46905 * 210.00226 * 18 16 14 21 21 H 1.48504 * 109.46967 * 330.00146 * 18 16 14 22 22 C 1.46496 * 119.99789 * 183.93791 * 12 10 8 23 23 C 1.53004 * 109.46821 * 114.94066 * 22 12 10 24 24 C 1.53001 * 109.46762 * 234.93878 * 22 12 10 25 25 C 1.40342 * 107.76890 * 0.22771 * 6 5 4 26 26 N 1.30822 * 108.20711 * 359.61588 * 25 6 5 27 27 H 1.08996 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47053 * 299.99862 * 1 2 3 29 29 H 1.09001 * 109.47427 * 59.99682 * 1 2 3 30 30 H 1.09001 * 109.47053 * 240.00138 * 2 1 3 31 31 H 1.09005 * 109.47031 * 119.99690 * 2 1 3 32 32 H 1.09001 * 109.47199 * 59.99590 * 3 2 1 33 33 H 1.09002 * 109.46687 * 300.00292 * 3 2 1 34 34 H 1.08001 * 126.17987 * 0.04063 * 5 4 3 35 35 H 0.97004 * 120.00286 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.47229 * 203.04248 * 13 12 10 37 37 H 1.09005 * 109.47251 * 323.04080 * 13 12 10 38 38 H 0.96993 * 120.00616 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47076 * 354.94113 * 22 12 10 40 40 H 1.08999 * 109.47257 * 60.00158 * 23 22 12 41 41 H 1.09003 * 109.46982 * 179.97438 * 23 22 12 42 42 H 1.08995 * 109.47456 * 299.99385 * 23 22 12 43 43 H 1.09000 * 109.47388 * 60.00340 * 24 22 12 44 44 H 1.09003 * 109.46725 * 179.97438 * 24 22 12 45 45 H 1.09000 * 109.47175 * 299.99549 * 24 22 12 46 46 H 1.07993 * 125.89530 * 179.76834 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2993 2.0701 -0.8971 6 6 5.5889 1.8243 -0.5476 7 7 6.7318 2.2921 -1.2172 8 6 7.9588 1.9710 -0.7611 9 8 8.0763 1.2771 0.2281 10 6 9.1737 2.4632 -1.4764 11 8 9.0581 3.0777 -2.5166 12 7 10.3985 2.2250 -0.9669 13 6 10.5432 1.4100 0.2418 14 6 10.5272 -0.0499 -0.1319 15 1 10.4195 -0.3414 -1.1662 16 6 10.6488 -1.0134 0.8468 17 7 10.6344 -2.2874 0.5208 18 14 10.8343 -0.5092 2.6360 19 1 9.4917 -0.3984 3.2607 20 1 11.6335 -1.5316 3.3580 21 1 11.5253 0.8031 2.7113 22 6 11.5851 2.7813 -1.6217 23 6 12.2545 3.7934 -0.6898 24 6 12.5681 1.6528 -1.9396 25 6 5.5751 1.0146 0.5986 26 7 4.3285 0.7919 0.9268 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9684 2.6605 -1.7387 35 1 6.6380 2.8462 -2.0079 36 1 11.4875 1.6495 0.7307 37 1 9.7181 1.6199 0.9225 38 1 10.7203 -2.9653 1.2092 39 1 11.2906 3.2779 -2.5462 40 1 12.5489 3.2968 0.2347 41 1 13.1376 4.2070 -1.1769 42 1 11.5542 4.5973 -0.4634 43 1 12.0913 0.9317 -2.6035 44 1 13.4508 2.0666 -2.4273 45 1 12.8626 1.1562 -1.0151 46 1 6.4437 0.6419 1.1210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783398874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:03 Heat of formation + Delta-G solvation = 1.782657 kcal Electronic energy + Delta-G solvation = -27856.141495 eV Core-core repulsion = 23975.709865 eV Total energy + Delta-G solvation = -3880.431630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.50801 -41.56647 -39.57351 -37.83485 -36.49435 -35.39592 -34.73280 -33.02143 -32.40571 -30.38028 -29.78493 -27.99391 -27.32669 -25.77882 -24.51735 -23.46464 -22.55008 -22.11050 -21.07743 -20.16413 -19.05385 -18.71725 -18.30652 -17.95812 -16.97525 -16.77935 -16.52269 -16.28288 -15.90999 -15.55398 -15.25622 -15.14417 -15.03264 -14.85761 -14.45608 -14.09818 -13.97322 -13.84458 -13.60935 -13.35943 -13.20528 -13.00888 -12.89211 -12.71469 -12.61353 -12.35612 -12.30861 -12.10933 -11.98551 -11.91951 -11.76411 -11.64873 -11.55739 -11.51327 -10.73141 -10.40101 -10.18109 -9.56480 -8.74389 -8.21111 -6.20816 0.34734 0.89909 1.26798 1.37752 1.43991 1.47717 1.68634 1.72821 2.40400 2.41195 2.63444 3.16834 3.44598 3.57881 3.90924 3.94794 4.00945 4.10256 4.22881 4.30350 4.38808 4.39290 4.50965 4.57255 4.59279 4.68721 4.82161 4.83233 4.87264 4.90006 4.98315 5.06802 5.13951 5.17900 5.22365 5.37313 5.38110 5.46723 5.54427 5.58097 5.74663 6.07480 6.15543 6.20839 6.44831 6.62388 6.76382 6.87346 7.13312 7.40188 8.95886 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.003700 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.876493 B = 7565.475048 C = 9001.278875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.131 3.869 4 N -0.363 5.363 5 C 0.051 3.949 6 C -0.027 4.027 7 N -0.607 5.607 8 C 0.491 3.509 9 O -0.494 6.494 10 C 0.511 3.489 11 O -0.559 6.559 12 N -0.556 5.556 13 C 0.204 3.796 14 C -0.496 4.496 15 H 0.026 0.974 16 C 0.021 3.979 17 N -0.950 5.950 18 Si 0.933 3.067 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.237 1.237 22 C 0.123 3.877 23 C -0.151 4.151 24 C -0.145 4.145 25 C 0.029 3.971 26 N -0.315 5.315 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.230 0.770 35 H 0.429 0.571 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.262 0.738 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 14.376 -3.442 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.012 3.988 4 N -0.147 5.147 5 C -0.099 4.099 6 C -0.131 4.131 7 N -0.255 5.255 8 C 0.273 3.727 9 O -0.367 6.367 10 C 0.293 3.707 11 O -0.441 6.441 12 N -0.286 5.286 13 C 0.083 3.917 14 C -0.535 4.535 15 H 0.044 0.956 16 C -0.177 4.177 17 N -0.591 5.591 18 Si 0.757 3.243 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.160 1.160 22 C 0.021 3.979 23 C -0.209 4.209 24 C -0.203 4.203 25 C -0.157 4.157 26 N -0.138 5.138 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.155 0.845 34 H 0.246 0.754 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.111 0.889 45 H 0.072 0.928 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.388 13.473 -2.361 20.589 hybrid contribution 0.859 -0.347 -0.083 0.930 sum -14.529 13.125 -2.444 19.732 Atomic orbital electron populations 1.21665 0.92303 1.02788 1.03266 1.21777 0.98040 0.95526 1.02115 1.22212 0.71194 0.99128 1.06264 1.48728 1.07511 1.38311 1.20143 1.22473 0.87791 1.01395 0.98198 1.17933 0.87175 1.08529 0.99477 1.42215 1.01879 1.51034 1.30403 1.20277 0.84959 0.81968 0.85472 1.90725 1.85320 1.34970 1.25686 1.19825 0.85104 0.80691 0.85056 1.90629 1.86791 1.43361 1.23282 1.48076 1.05062 1.47611 1.27887 1.20094 0.98773 0.89039 0.83773 1.21188 1.48485 0.90314 0.93503 0.95593 1.25544 0.94584 0.94462 1.03062 1.70040 1.53054 1.01092 1.34920 0.85938 0.78601 0.79433 0.80304 1.20390 1.21174 1.16029 1.21389 0.84306 0.94965 0.97213 1.22101 1.01370 0.97781 0.99651 1.21989 0.98897 0.97540 1.01865 1.24306 0.95384 0.98859 0.97139 1.77308 1.01171 1.20097 1.15229 0.92271 0.91589 0.90580 0.92435 0.93148 0.88706 0.84516 0.75408 0.73245 0.93901 0.91845 0.92864 0.88513 0.92568 0.88459 0.92291 0.95052 0.88882 0.92825 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.14 -2.15 6.12 30.59 0.19 -1.96 16 3 C 0.13 1.80 6.51 86.38 0.56 2.36 16 4 N -0.36 -8.61 3.69 -347.39 -1.28 -9.89 16 5 C 0.05 1.10 11.49 83.62 0.96 2.06 16 6 C -0.03 -0.84 6.90 37.71 0.26 -0.58 16 7 N -0.61 -19.38 5.45 -305.40 -1.67 -21.05 16 8 C 0.49 19.98 7.74 87.23 0.67 20.66 16 9 O -0.49 -23.38 9.54 -3.41 -0.03 -23.41 16 10 C 0.51 20.91 7.66 87.23 0.67 21.57 16 11 O -0.56 -22.27 15.82 -3.30 -0.05 -22.33 16 12 N -0.56 -22.93 2.37 -803.85 -1.91 -24.84 16 13 C 0.20 9.54 2.98 85.64 0.25 9.79 16 14 C -0.50 -28.13 8.02 25.60 0.21 -27.93 16 15 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 16 C 0.02 1.21 5.47 84.65 0.46 1.67 16 17 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 18 Si 0.93 45.04 27.47 68.60 1.88 46.93 16 19 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 22 C 0.12 4.14 3.22 44.99 0.15 4.29 16 23 C -0.15 -3.98 9.26 71.98 0.67 -3.32 16 24 C -0.15 -4.98 8.66 71.98 0.62 -4.36 16 25 C 0.03 1.09 10.84 85.36 0.93 2.02 16 26 N -0.31 -10.73 12.40 -56.72 -0.70 -11.43 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.14 0.76 8.07 -2.39 -0.02 0.74 16 34 H 0.23 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.43 10.94 8.30 -92.71 -0.77 10.17 16 36 H 0.04 1.90 5.54 -2.39 -0.01 1.88 16 37 H 0.06 3.09 4.81 -2.43 -0.01 3.08 16 38 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.10 3.18 6.91 -2.39 -0.02 3.17 16 40 H 0.06 1.57 6.92 -2.39 -0.02 1.55 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.05 2.06 7.09 -2.39 -0.02 2.04 16 46 H 0.18 7.81 5.92 -2.91 -0.02 7.79 16 Total: -1.00 -78.76 375.64 4.02 -74.73 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.17 Total: 25.79 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 7.31 Total: 25.62 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.26 Total: -127.33 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.08 Total: -45.74 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -78.76 4.02 -74.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783398874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.516 kcal (2) G-P(sol) polarization free energy of solvation -78.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds