Wall clock time and date at job start Tue Mar 31 2020 12:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47328 * 2 1 4 4 H 1.08998 * 109.46812 * 302.88093 * 3 2 1 5 5 N 1.46901 * 109.46935 * 62.87545 * 3 2 1 6 6 C 1.46899 * 111.00062 * 199.04047 * 5 3 2 7 7 C 1.53000 * 109.47192 * 174.63433 * 6 5 3 8 8 H 1.09000 * 109.47416 * 304.99832 * 7 6 5 9 9 C 1.47200 * 109.47033 * 65.00207 * 7 6 5 10 10 N 5.83291 * 100.51277 * 49.99703 * 2 1 3 11 11 C 1.53004 * 109.46823 * 184.99721 * 7 6 5 12 12 C 1.50706 * 109.46795 * 175.00022 * 11 7 6 13 13 H 1.08003 * 120.00065 * 0.02562 * 12 11 7 14 14 C 1.37880 * 119.99991 * 180.02562 * 12 11 7 15 15 N 1.31510 * 119.99693 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99851 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47443 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46775 * 120.00108 * 16 14 12 19 19 H 1.48500 * 109.47107 * 239.99927 * 16 14 12 20 20 C 1.50695 * 109.47165 * 182.87333 * 3 2 1 21 21 C 1.36123 * 120.17571 * 266.57513 * 20 3 2 22 22 C 1.39337 * 120.99187 * 179.97438 * 21 20 3 23 23 C 1.36123 * 120.98893 * 359.97438 * 22 21 20 24 24 C 1.40509 * 119.65086 * 0.02562 * 23 22 21 25 25 C 1.40547 * 121.28583 * 179.97438 * 24 23 22 26 26 C 1.36086 * 119.65078 * 180.02562 * 25 24 23 27 27 C 1.39374 * 120.99562 * 0.02562 * 26 25 24 28 28 C 1.36092 * 120.99507 * 359.94995 * 27 26 25 29 29 C 1.40504 * 120.17234 * 86.55494 * 20 3 2 30 30 H 1.09007 * 109.47084 * 304.67998 * 1 2 3 31 31 H 1.09000 * 109.47446 * 64.67724 * 1 2 3 32 32 H 1.08996 * 109.46891 * 184.68129 * 1 2 3 33 33 H 1.09004 * 109.46948 * 239.99971 * 2 1 3 34 34 H 1.08998 * 109.47215 * 120.00178 * 2 1 3 35 35 H 1.00898 * 111.00310 * 75.08362 * 5 3 2 36 36 H 1.08994 * 109.47090 * 294.63836 * 6 5 3 37 37 H 1.08996 * 109.46985 * 54.63535 * 6 5 3 38 38 H 1.08998 * 109.47489 * 294.99852 * 11 7 6 39 39 H 1.08999 * 109.46804 * 55.00425 * 11 7 6 40 40 H 0.97000 * 119.99828 * 179.97438 * 15 14 12 41 41 H 1.08004 * 119.50735 * 359.97438 * 21 20 3 42 42 H 1.07999 * 119.50698 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.17776 * 179.73126 * 23 22 21 44 44 H 1.08001 * 120.17311 * 0.02562 * 25 24 23 45 45 H 1.08005 * 119.50329 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.50585 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.17256 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6351 1.9710 -0.8630 5 7 1.6079 2.1146 1.2327 6 6 1.6708 3.5749 1.0859 7 6 1.0894 4.2386 2.3358 8 1 0.0815 3.8626 2.5115 9 6 1.9388 3.9271 3.4970 10 7 2.5942 3.6866 4.3931 11 6 1.0400 5.7543 2.1322 12 6 0.3555 6.3974 3.3108 13 1 -0.0075 5.7862 4.1240 14 6 0.1927 7.7659 3.3511 15 7 0.6343 8.5100 2.3607 16 14 -0.6550 8.5630 4.8123 17 1 -1.0561 7.5146 5.7844 18 1 0.2780 9.5149 5.4670 19 1 -1.8613 9.2934 4.3469 20 6 3.5453 1.4430 -0.0712 21 6 4.2843 1.4940 1.0708 22 6 5.6769 1.4948 1.0248 23 6 6.3389 1.4442 -0.1635 24 6 5.6100 1.3908 -1.3636 25 6 6.2582 1.3382 -2.6096 26 6 5.5193 1.2878 -3.7513 27 6 4.1264 1.2881 -3.7053 28 6 3.4644 1.3377 -2.5172 29 6 4.1933 1.3906 -1.3168 30 1 -0.3633 0.5848 0.8451 31 1 -0.3634 0.4395 -0.9289 32 1 -0.3633 -1.0242 0.0839 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.1543 1.8068 2.0231 36 1 2.7087 3.8830 0.9603 37 1 1.0938 3.8774 0.2121 38 1 2.0547 6.1425 2.0451 39 1 0.4849 5.9806 1.2218 40 1 0.5195 9.4727 2.3888 41 1 3.7837 1.5343 2.0270 42 1 6.2395 1.5362 1.9457 43 1 7.4187 1.4499 -0.1841 44 1 7.3370 1.3378 -2.6606 45 1 6.0199 1.2479 -4.7075 46 1 3.5637 1.2479 -4.6264 47 1 2.3846 1.3368 -2.4971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886918370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:18 Heat of formation + Delta-G solvation = 51.972115 kcal Electronic energy + Delta-G solvation = -26384.858408 eV Core-core repulsion = 22917.452420 eV Total energy + Delta-G solvation = -3467.405988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81482 -38.18058 -36.60380 -35.84753 -34.01731 -32.83976 -32.32670 -30.98284 -30.36592 -29.22344 -26.80422 -25.33766 -23.47947 -23.27553 -22.50488 -22.03018 -21.71555 -20.15569 -17.58772 -17.35967 -16.72749 -16.54508 -16.43342 -15.31809 -15.25686 -14.65667 -14.55410 -14.37465 -13.94418 -13.83217 -13.62417 -13.41812 -13.13197 -13.03576 -12.80199 -12.64410 -12.33382 -12.13326 -12.06115 -11.86509 -11.64088 -11.46992 -11.31129 -11.11098 -11.05450 -10.98586 -10.85202 -10.74621 -10.66419 -10.49725 -10.26376 -9.89312 -9.53137 -9.21101 -8.72906 -8.45987 -8.41846 -7.95642 -6.09088 -4.12111 0.39473 0.89764 1.91752 2.87110 3.28636 3.36853 3.41482 3.57347 3.63002 3.97699 4.18351 4.36455 4.42740 4.61596 4.71069 4.76854 4.82041 4.85603 5.02299 5.04806 5.10959 5.24393 5.27519 5.29009 5.33046 5.42511 5.50241 5.64301 5.65569 5.74033 5.81209 5.86670 5.96965 5.98366 6.08736 6.11501 6.14615 6.15314 6.30651 6.35580 6.43017 6.45933 6.50058 6.56550 6.68930 6.88652 7.08939 7.38734 7.44755 7.54270 7.86154 8.23676 8.40564 8.92739 9.53351 11.01825 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003023 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.746710 B = 9259.486791 C = 9549.117568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C 0.124 3.876 4 H 0.094 0.906 5 N -0.678 5.678 6 C 0.065 3.935 7 C 0.008 3.992 8 H 0.111 0.889 9 C 0.242 3.758 10 N -0.477 5.477 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.093 4.093 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.114 4.114 24 C -0.050 4.050 25 C -0.108 4.108 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.103 4.103 29 C -0.042 4.042 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.339 0.661 36 H 0.037 0.963 37 H 0.091 0.909 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.262 0.738 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -17.981 -13.372 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C 0.013 3.987 4 H 0.112 0.888 5 N -0.310 5.310 6 C -0.065 4.065 7 C -0.014 4.014 8 H 0.129 0.871 9 C -0.074 4.074 10 N -0.155 5.155 11 C -0.006 4.006 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.095 4.095 21 C -0.135 4.135 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.050 4.050 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.138 4.138 28 C -0.121 4.121 29 C -0.043 4.043 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.160 0.840 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.460 -18.198 -12.210 23.149 hybrid contribution 0.453 0.985 0.569 1.224 sum 7.913 -17.213 -11.641 22.235 Atomic orbital electron populations 1.21688 0.94691 1.01057 1.02835 1.21479 0.96886 0.94189 1.01761 1.20681 0.87410 0.96202 0.94368 0.88829 1.60814 1.59206 1.06356 1.04620 1.22115 1.00017 0.85900 0.98438 1.19319 0.96103 1.00951 0.85017 0.87132 1.29324 0.92991 0.90905 0.94223 1.81026 1.11519 1.11705 1.11205 1.19162 0.98421 0.84603 0.98438 1.21182 1.38141 0.92083 1.04906 0.92458 1.24955 0.95522 0.97424 0.96099 1.69949 1.46244 1.05446 1.31347 0.86544 0.79313 0.79472 0.82809 1.19673 1.21022 1.20828 1.20632 0.97503 0.99011 0.92385 1.20690 0.94121 1.00523 0.98184 1.20829 0.94320 0.99007 0.98152 1.20990 0.99547 1.00943 0.91715 1.18104 0.92673 1.00373 0.93849 1.21009 0.99673 1.00262 0.91658 1.20839 0.94171 1.00278 0.98324 1.20848 0.94470 1.00457 0.98018 1.21101 0.99981 0.99355 0.91630 1.17898 0.92417 1.00699 0.93267 0.90663 0.93206 0.93555 0.91969 0.92039 0.84048 0.94494 0.89056 0.95814 0.94251 0.92872 0.86194 0.85962 0.85727 0.85786 0.86151 0.86012 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.84 37.16 0.37 -1.02 16 2 C -0.11 -1.04 5.61 -26.73 -0.15 -1.19 16 3 C 0.12 1.38 1.68 -68.87 -0.12 1.26 16 4 H 0.09 1.01 6.29 -51.93 -0.33 0.69 16 5 N -0.68 -8.66 5.33 -107.96 -0.58 -9.24 16 6 C 0.07 0.97 4.85 -3.82 -0.02 0.95 16 7 C 0.01 0.15 2.42 -93.41 -0.23 -0.08 16 8 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 9 C 0.24 4.86 13.07 -20.76 -0.27 4.59 16 10 N -0.48 -10.27 18.54 42.15 0.78 -9.49 16 11 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 12 C -0.52 -14.00 8.60 -34.44 -0.30 -14.29 16 13 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.09 -1.13 4.60 -104.53 -0.48 -1.61 16 21 C -0.12 -1.48 9.00 -39.93 -0.36 -1.84 16 22 C -0.11 -1.24 9.95 -39.93 -0.40 -1.64 16 23 C -0.11 -1.27 9.77 -39.49 -0.39 -1.65 16 24 C -0.05 -0.58 5.74 -106.83 -0.61 -1.20 16 25 C -0.11 -1.06 9.77 -39.48 -0.39 -1.45 16 26 C -0.12 -1.06 9.95 -39.93 -0.40 -1.45 16 27 C -0.12 -1.10 9.95 -39.93 -0.40 -1.49 16 28 C -0.10 -1.06 9.28 -39.48 -0.37 -1.43 16 29 C -0.04 -0.51 5.74 -106.83 -0.61 -1.12 16 30 H 0.07 0.82 7.56 -51.93 -0.39 0.43 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.34 4.53 5.42 -39.29 -0.21 4.32 16 36 H 0.04 0.59 7.74 -51.93 -0.40 0.19 16 37 H 0.09 1.27 7.95 -51.93 -0.41 0.86 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.12 1.55 5.91 -52.48 -0.31 1.24 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 46 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.13 1.14 6.45 -52.49 -0.34 0.80 16 LS Contribution 388.20 15.07 5.85 5.85 Total: -1.00 -30.23 388.20 -10.56 -40.79 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.00 Total: 3.00 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -5.33 Total: -22.40 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.94 Total: -43.60 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.23 -10.56 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886918370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.765 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds