Wall clock time and date at job start Tue Mar 31 2020 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47328 * 2 1 4 4 H 1.08998 * 109.46812 * 302.88093 * 3 2 1 5 5 N 1.46901 * 109.46935 * 62.87545 * 3 2 1 6 6 C 1.46899 * 111.00062 * 199.04047 * 5 3 2 7 7 C 1.53000 * 109.47192 * 174.63433 * 6 5 3 8 8 H 1.09000 * 109.47416 * 304.99832 * 7 6 5 9 9 C 1.47200 * 109.47033 * 65.00207 * 7 6 5 10 10 N 5.83291 * 100.51277 * 49.99703 * 2 1 3 11 11 C 1.53004 * 109.46823 * 184.99721 * 7 6 5 12 12 C 1.50706 * 109.46795 * 175.00022 * 11 7 6 13 13 H 1.08003 * 120.00065 * 0.02562 * 12 11 7 14 14 C 1.37880 * 119.99991 * 180.02562 * 12 11 7 15 15 N 1.31510 * 119.99693 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99851 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47443 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46775 * 120.00108 * 16 14 12 19 19 H 1.48500 * 109.47107 * 239.99927 * 16 14 12 20 20 C 1.50695 * 109.47165 * 182.87333 * 3 2 1 21 21 C 1.36123 * 120.17571 * 266.57513 * 20 3 2 22 22 C 1.39337 * 120.99187 * 179.97438 * 21 20 3 23 23 C 1.36123 * 120.98893 * 359.97438 * 22 21 20 24 24 C 1.40509 * 119.65086 * 0.02562 * 23 22 21 25 25 C 1.40547 * 121.28583 * 179.97438 * 24 23 22 26 26 C 1.36086 * 119.65078 * 180.02562 * 25 24 23 27 27 C 1.39374 * 120.99562 * 0.02562 * 26 25 24 28 28 C 1.36092 * 120.99507 * 359.94995 * 27 26 25 29 29 C 1.40504 * 120.17234 * 86.55494 * 20 3 2 30 30 H 1.09007 * 109.47084 * 304.67998 * 1 2 3 31 31 H 1.09000 * 109.47446 * 64.67724 * 1 2 3 32 32 H 1.08996 * 109.46891 * 184.68129 * 1 2 3 33 33 H 1.09004 * 109.46948 * 239.99971 * 2 1 3 34 34 H 1.08998 * 109.47215 * 120.00178 * 2 1 3 35 35 H 1.00898 * 111.00310 * 75.08362 * 5 3 2 36 36 H 1.08994 * 109.47090 * 294.63836 * 6 5 3 37 37 H 1.08996 * 109.46985 * 54.63535 * 6 5 3 38 38 H 1.08998 * 109.47489 * 294.99852 * 11 7 6 39 39 H 1.08999 * 109.46804 * 55.00425 * 11 7 6 40 40 H 0.97000 * 119.99828 * 179.97438 * 15 14 12 41 41 H 1.08004 * 119.50735 * 359.97438 * 21 20 3 42 42 H 1.07999 * 119.50698 * 179.97438 * 22 21 20 43 43 H 1.08001 * 120.17776 * 179.73126 * 23 22 21 44 44 H 1.08001 * 120.17311 * 0.02562 * 25 24 23 45 45 H 1.08005 * 119.50329 * 179.97438 * 26 25 24 46 46 H 1.08009 * 119.50585 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.17256 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6351 1.9710 -0.8630 5 7 1.6079 2.1146 1.2327 6 6 1.6708 3.5749 1.0859 7 6 1.0894 4.2386 2.3358 8 1 0.0815 3.8626 2.5115 9 6 1.9388 3.9271 3.4970 10 7 2.5942 3.6866 4.3931 11 6 1.0400 5.7543 2.1322 12 6 0.3555 6.3974 3.3108 13 1 -0.0075 5.7862 4.1240 14 6 0.1927 7.7659 3.3511 15 7 0.6343 8.5100 2.3607 16 14 -0.6550 8.5630 4.8123 17 1 -1.0561 7.5146 5.7844 18 1 0.2780 9.5149 5.4670 19 1 -1.8613 9.2934 4.3469 20 6 3.5453 1.4430 -0.0712 21 6 4.2843 1.4940 1.0708 22 6 5.6769 1.4948 1.0248 23 6 6.3389 1.4442 -0.1635 24 6 5.6100 1.3908 -1.3636 25 6 6.2582 1.3382 -2.6096 26 6 5.5193 1.2878 -3.7513 27 6 4.1264 1.2881 -3.7053 28 6 3.4644 1.3377 -2.5172 29 6 4.1933 1.3906 -1.3168 30 1 -0.3633 0.5848 0.8451 31 1 -0.3634 0.4395 -0.9289 32 1 -0.3633 -1.0242 0.0839 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.1543 1.8068 2.0231 36 1 2.7087 3.8830 0.9603 37 1 1.0938 3.8774 0.2121 38 1 2.0547 6.1425 2.0451 39 1 0.4849 5.9806 1.2218 40 1 0.5195 9.4727 2.3888 41 1 3.7837 1.5343 2.0270 42 1 6.2395 1.5362 1.9457 43 1 7.4187 1.4499 -0.1841 44 1 7.3370 1.3378 -2.6606 45 1 6.0199 1.2479 -4.7075 46 1 3.5637 1.2479 -4.6264 47 1 2.3846 1.3368 -2.4971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886918370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:17 Heat of formation + Delta-G solvation = 38.325166 kcal Electronic energy + Delta-G solvation = -26385.450184 eV Core-core repulsion = 22917.452420 eV Total energy + Delta-G solvation = -3467.997764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63883 -39.27220 -37.88859 -36.81597 -35.69557 -34.45328 -33.14417 -32.35860 -31.18009 -30.13965 -28.32729 -26.50428 -24.49932 -24.17235 -23.75223 -23.46194 -22.69496 -21.04519 -18.61545 -18.35471 -18.28185 -18.04085 -17.38606 -16.67764 -16.35201 -16.06366 -15.54201 -15.20707 -15.04155 -14.73656 -14.66440 -14.48795 -14.38642 -14.37958 -13.95621 -13.87645 -13.78955 -13.46351 -13.10782 -13.09981 -12.97445 -12.77658 -12.50243 -12.44280 -12.34655 -12.26262 -12.03858 -11.88473 -11.80637 -11.70357 -11.48038 -11.37687 -11.12791 -10.67440 -10.56265 -9.54830 -9.50585 -8.75810 -8.19917 -6.28214 -0.40079 0.07646 1.11231 1.38650 1.41490 1.52120 1.94141 1.96285 2.07407 2.40966 3.10706 3.15150 3.17453 3.25274 3.54581 3.79360 3.90363 4.02448 4.13054 4.16592 4.20968 4.30389 4.31523 4.41397 4.48641 4.49623 4.58522 4.61595 4.70619 4.81123 4.87060 4.93035 4.94762 5.02873 5.08410 5.20034 5.23996 5.31376 5.33932 5.37847 5.46579 5.50314 5.61049 5.63124 5.66290 5.68119 5.78905 5.89956 6.02573 6.12020 6.20465 6.28821 6.74844 6.86939 7.40433 8.91268 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003023 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.746710 B = 9259.486791 C = 9549.117568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C 0.128 3.872 4 H 0.101 0.899 5 N -0.673 5.673 6 C 0.079 3.921 7 C 0.021 3.979 8 H 0.126 0.874 9 C 0.250 3.750 10 N -0.503 5.503 11 C 0.039 3.961 12 C -0.537 4.537 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.098 4.098 21 C -0.136 4.136 22 C -0.125 4.125 23 C -0.115 4.115 24 C -0.071 4.071 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.117 4.117 29 C -0.061 4.061 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.335 0.665 36 H 0.023 0.977 37 H 0.106 0.894 38 H -0.004 1.004 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.109 0.891 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -18.924 -14.960 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C 0.018 3.982 4 H 0.119 0.881 5 N -0.304 5.304 6 C -0.051 4.051 7 C -0.001 4.001 8 H 0.144 0.856 9 C -0.066 4.066 10 N -0.180 5.180 11 C 0.001 3.999 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.100 4.100 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.133 4.133 24 C -0.071 4.071 25 C -0.135 4.135 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.062 4.062 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.042 0.958 37 H 0.124 0.876 38 H 0.014 0.986 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.162 0.838 45 H 0.166 0.834 46 H 0.165 0.835 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.101 -19.159 -13.799 24.656 hybrid contribution 0.614 1.247 0.970 1.696 sum 7.715 -17.912 -12.828 23.343 Atomic orbital electron populations 1.21653 0.94163 1.01493 1.02607 1.21427 0.97174 0.93142 1.01878 1.20732 0.87106 0.96854 0.93517 0.88123 1.60808 1.59215 1.04906 1.05426 1.21909 0.99128 0.87121 0.96953 1.19215 0.96916 0.98116 0.85871 0.85649 1.29653 0.92559 0.90268 0.94082 1.81020 1.12414 1.12441 1.12138 1.18973 0.96190 0.87588 0.97192 1.21572 1.37803 0.92441 1.05694 0.92732 1.25723 0.96353 0.98234 0.98503 1.70044 1.47549 1.05739 1.33024 0.85632 0.78526 0.78509 0.79846 1.19324 1.21183 1.19734 1.20700 0.97793 0.99046 0.92463 1.20726 0.94740 1.01946 0.98051 1.20992 0.94264 1.00037 0.98992 1.21268 1.00678 0.99997 0.91352 1.18433 0.92947 1.00892 0.94876 1.21304 1.00927 1.00114 0.91190 1.21236 0.94307 0.98823 0.99256 1.21234 0.94940 0.98833 0.98601 1.21301 1.00703 0.99968 0.91512 1.18142 0.92977 1.01289 0.93757 0.92111 0.92366 0.92610 0.90938 0.92817 0.84446 0.95840 0.87605 0.98564 0.94577 0.92736 0.87264 0.85313 0.83630 0.83788 0.83414 0.83465 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.84 71.98 0.71 -1.76 16 2 C -0.10 -1.82 5.61 30.59 0.17 -1.65 16 3 C 0.13 2.75 1.68 44.17 0.07 2.82 16 4 H 0.10 2.03 6.29 -2.39 -0.02 2.01 16 5 N -0.67 -16.91 5.33 -495.47 -2.64 -19.55 16 6 C 0.08 2.33 4.85 86.30 0.42 2.75 16 7 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 8 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 9 C 0.25 10.13 13.07 89.44 1.17 11.30 16 10 N -0.50 -21.86 18.54 20.01 0.37 -21.49 16 11 C 0.04 1.85 4.42 29.85 0.13 1.98 16 12 C -0.54 -28.71 8.60 25.60 0.22 -28.49 16 13 H 0.05 2.89 7.59 -2.91 -0.02 2.87 16 14 C 0.01 0.59 5.46 84.66 0.46 1.05 16 15 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 16 Si 0.95 43.78 29.54 68.60 2.03 45.80 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 C -0.10 -2.38 4.60 -19.81 -0.09 -2.47 16 21 C -0.14 -3.57 9.00 22.04 0.20 -3.37 16 22 C -0.12 -3.04 9.95 22.04 0.22 -2.82 16 23 C -0.12 -2.53 9.77 22.33 0.22 -2.31 16 24 C -0.07 -1.62 5.74 -21.30 -0.12 -1.74 16 25 C -0.12 -2.08 9.77 22.33 0.22 -1.86 16 26 C -0.12 -1.79 9.95 22.04 0.22 -1.57 16 27 C -0.12 -1.85 9.95 22.04 0.22 -1.63 16 28 C -0.12 -2.21 9.28 22.33 0.21 -2.01 16 29 C -0.06 -1.42 5.74 -21.30 -0.12 -1.55 16 30 H 0.06 1.24 7.56 -2.38 -0.02 1.23 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.33 9.06 5.42 -89.70 -0.49 8.57 16 36 H 0.02 0.76 7.74 -2.39 -0.02 0.74 16 37 H 0.11 2.83 7.95 -2.39 -0.02 2.81 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.11 2.99 5.91 -2.91 -0.02 2.97 16 42 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 43 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.14 2.19 6.45 -2.91 -0.02 2.17 16 Total: -1.00 -64.76 388.20 5.01 -59.75 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.48 Total: 21.29 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 4.49 Total: -32.58 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -1.98 Total: -94.26 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.76 5.01 -59.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886918370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.072 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds