Wall clock time and date at job start Tue Mar 31 2020 12:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47098 * 2 1 4 4 H 1.08998 * 109.46719 * 182.57134 * 3 2 1 5 5 N 1.46894 * 109.46941 * 302.57276 * 3 2 1 6 6 C 1.46902 * 110.99879 * 278.16706 * 5 3 2 7 7 C 1.52999 * 109.46890 * 174.83938 * 6 5 3 8 8 H 1.09005 * 109.47402 * 55.00590 * 7 6 5 9 9 C 1.47193 * 109.47296 * 294.99929 * 7 6 5 10 10 N 4.79231 * 62.32017 * 289.34390 * 2 1 3 11 11 C 1.53004 * 109.47229 * 174.99857 * 7 6 5 12 12 C 1.50700 * 109.47465 * 185.00012 * 11 7 6 13 13 H 1.08001 * 119.99793 * 0.02562 * 12 11 7 14 14 C 1.37871 * 119.99918 * 180.02562 * 12 11 7 15 15 N 1.31520 * 120.00365 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47141 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47193 * 119.99633 * 16 14 12 19 19 H 1.48497 * 109.47471 * 239.99764 * 16 14 12 20 20 C 1.50697 * 109.46910 * 62.57509 * 3 2 1 21 21 C 1.36124 * 120.17256 * 264.99462 * 20 3 2 22 22 C 1.39332 * 120.99508 * 179.97438 * 21 20 3 23 23 C 1.36133 * 120.98342 * 0.02562 * 22 21 20 24 24 C 1.40495 * 119.65418 * 0.02562 * 23 22 21 25 25 C 1.40545 * 121.28662 * 179.97438 * 24 23 22 26 26 C 1.36095 * 119.65070 * 180.02562 * 25 24 23 27 27 C 1.39381 * 120.99559 * 0.02816 * 26 25 24 28 28 C 1.36083 * 120.99210 * 359.95138 * 27 26 25 29 29 C 1.40502 * 120.17532 * 84.97822 * 20 3 2 30 30 H 1.09005 * 109.47172 * 174.53546 * 1 2 3 31 31 H 1.08997 * 109.47421 * 294.53847 * 1 2 3 32 32 H 1.09002 * 109.47261 * 54.53687 * 1 2 3 33 33 H 1.09001 * 109.47321 * 239.99616 * 2 1 3 34 34 H 1.09004 * 109.47086 * 120.00288 * 2 1 3 35 35 H 1.00903 * 111.00012 * 154.22016 * 5 3 2 36 36 H 1.09000 * 109.47352 * 294.83785 * 6 5 3 37 37 H 1.09004 * 109.47291 * 54.83994 * 6 5 3 38 38 H 1.08998 * 109.47390 * 305.00471 * 11 7 6 39 39 H 1.09008 * 109.47051 * 65.00121 * 11 7 6 40 40 H 0.96997 * 119.99511 * 179.97438 * 15 14 12 41 41 H 1.08005 * 119.50711 * 0.02562 * 21 20 3 42 42 H 1.07998 * 119.51157 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.16963 * 179.71808 * 23 22 21 44 44 H 1.08003 * 120.17822 * 0.02562 * 25 24 23 45 45 H 1.08007 * 119.49821 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.50310 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.17549 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4428 -0.0461 5 7 1.5002 2.1527 -1.1671 6 6 2.2911 1.8643 -2.3709 7 6 1.6266 2.5151 -3.5857 8 1 1.4921 3.5805 -3.3991 9 6 0.3156 1.8889 -3.8220 10 7 -0.6962 1.4057 -4.0043 11 6 2.5136 2.3212 -4.8172 12 6 1.9209 3.0659 -5.9856 13 1 1.0035 3.6222 -5.8621 14 6 2.5498 3.0370 -7.2122 15 7 3.6673 2.3600 -7.3625 16 14 1.8147 3.9595 -8.6607 17 1 0.5647 4.6375 -8.2329 18 1 2.7855 4.9729 -9.1464 19 1 1.5099 3.0021 -9.7542 20 6 1.5904 2.1342 1.2611 21 6 0.4523 2.8811 1.2633 22 6 0.0206 3.5275 2.4197 23 6 0.7247 3.4312 3.5808 24 6 1.9050 2.6700 3.6170 25 6 2.6588 2.5478 4.7968 26 6 3.7974 1.8023 4.7941 27 6 4.2299 1.1566 3.6371 28 6 3.5257 1.2520 2.4765 29 6 2.3435 2.0113 2.4409 30 1 -0.3634 -1.0230 -0.0979 31 1 -0.3634 0.4268 0.9348 32 1 -0.3634 0.5962 -0.8370 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.4519 3.1458 -0.9956 36 1 3.2974 2.2650 -2.2492 37 1 2.3451 0.7859 -2.5206 38 1 3.5122 2.7059 -4.6100 39 1 2.5758 1.2596 -5.0568 40 1 4.1095 2.3395 -8.2256 41 1 -0.1251 2.9734 0.3553 42 1 -0.8857 4.1142 2.3943 43 1 0.3804 3.9414 4.4682 44 1 2.3363 3.0428 5.7009 45 1 4.3750 1.7103 5.7021 46 1 5.1373 0.5715 3.6620 47 1 3.8726 0.7459 1.5878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886918371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:22 Heat of formation + Delta-G solvation = 52.087632 kcal Electronic energy + Delta-G solvation = -26180.299836 eV Core-core repulsion = 22712.898857 eV Total energy + Delta-G solvation = -3467.400979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82355 -38.13506 -36.65461 -35.78275 -33.96795 -32.91721 -32.04145 -30.84690 -30.44614 -29.29675 -26.86777 -25.41787 -23.64474 -23.35126 -22.62343 -21.90298 -21.67341 -19.65910 -17.61233 -17.43613 -16.94180 -16.41002 -16.31675 -15.40338 -15.05789 -14.85249 -14.53380 -14.18880 -14.09244 -13.83507 -13.53311 -13.45308 -13.31145 -13.11537 -12.66825 -12.62326 -12.21294 -12.16235 -11.94513 -11.83380 -11.50548 -11.37456 -11.29318 -11.16162 -11.07810 -11.02365 -10.86156 -10.68023 -10.56177 -10.40969 -10.21882 -9.95444 -9.54352 -9.21834 -8.75263 -8.46977 -8.33172 -7.98483 -6.10386 -4.13340 0.36569 0.87018 1.88393 2.85192 3.27975 3.36343 3.40898 3.75050 3.84981 3.94784 4.11763 4.36377 4.41691 4.63667 4.67798 4.77792 4.87299 4.92210 4.98499 5.03092 5.18238 5.22036 5.24903 5.27998 5.37563 5.48346 5.56013 5.60310 5.68580 5.72695 5.80405 5.93471 5.99743 6.01576 6.04817 6.12545 6.13616 6.25764 6.29545 6.34699 6.40538 6.47871 6.53054 6.61672 6.66633 6.86626 7.09965 7.41500 7.45128 7.52818 7.85222 8.22607 8.60073 8.91786 9.52308 11.00548 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.002608 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.079507 B =10735.180396 C =11056.041019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.127 3.873 4 H 0.056 0.944 5 N -0.685 5.685 6 C 0.065 3.935 7 C 0.011 3.989 8 H 0.099 0.901 9 C 0.256 3.744 10 N -0.479 5.479 11 C 0.031 3.969 12 C -0.525 4.525 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.067 4.067 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.115 4.115 24 C -0.052 4.052 25 C -0.108 4.108 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.105 4.105 29 C -0.044 4.044 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.344 0.656 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.137 0.863 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 -0.094 25.739 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C 0.017 3.983 4 H 0.073 0.927 5 N -0.317 5.317 6 C -0.064 4.064 7 C -0.011 4.011 8 H 0.116 0.884 9 C -0.061 4.061 10 N -0.156 5.156 11 C -0.007 4.007 12 C -0.563 4.563 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.067 4.067 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.133 4.133 24 C -0.052 4.052 25 C -0.126 4.126 26 C -0.138 4.138 27 C -0.138 4.138 28 C -0.123 4.123 29 C -0.044 4.044 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.163 0.837 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.155 0.845 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.089 -1.350 25.191 25.251 hybrid contribution 0.895 1.198 -0.629 1.622 sum -0.194 -0.152 24.562 24.563 Atomic orbital electron populations 1.21666 0.95002 1.00930 1.02494 1.21479 0.97504 0.94049 1.01406 1.20407 0.96845 0.94212 0.86835 0.92670 1.60612 1.54496 1.14043 1.02543 1.22118 0.94617 1.01603 0.88097 1.19181 0.86155 0.98524 0.97234 0.88352 1.28834 0.93982 0.92595 0.90668 1.80986 1.12928 1.10505 1.11184 1.19170 0.94086 0.98420 0.89059 1.21178 1.09131 1.31359 0.94619 0.92453 1.24955 0.94842 0.95378 0.98838 1.69950 1.17339 1.41295 1.24462 0.86544 0.79292 0.79704 0.82593 1.19675 1.20874 1.20969 1.19722 0.95340 0.97638 0.93998 1.20884 0.96056 0.96301 0.98860 1.20912 0.99829 0.99275 0.92857 1.20992 0.94661 0.99204 0.98485 1.18050 0.95686 0.98128 0.93314 1.21006 0.95302 0.99311 0.97001 1.20836 0.96847 0.97769 0.98303 1.20847 1.00047 0.99942 0.92983 1.21126 0.94250 0.98329 0.98561 1.17911 0.95399 0.98133 0.92958 0.93928 0.93432 0.90705 0.91527 0.92259 0.83724 0.93164 0.90376 0.94502 0.95594 0.92866 0.84536 0.85984 0.85894 0.85824 0.86208 0.86085 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.22 37.15 0.34 -1.45 16 2 C -0.11 -1.21 5.71 -26.73 -0.15 -1.37 16 3 C 0.13 1.40 1.93 -68.87 -0.13 1.26 16 4 H 0.06 0.59 6.46 -51.93 -0.34 0.26 16 5 N -0.68 -8.33 4.17 -107.96 -0.45 -8.78 16 6 C 0.07 0.92 4.84 -3.82 -0.02 0.90 16 7 C 0.01 0.20 2.40 -93.41 -0.22 -0.03 16 8 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 9 C 0.26 5.20 13.67 -20.76 -0.28 4.91 16 10 N -0.48 -10.62 18.54 42.15 0.78 -9.83 16 11 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 12 C -0.52 -13.85 8.60 -34.44 -0.30 -14.15 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.07 -0.73 4.31 -104.53 -0.45 -1.18 16 21 C -0.10 -1.10 7.60 -39.93 -0.30 -1.40 16 22 C -0.11 -1.06 9.95 -39.93 -0.40 -1.45 16 23 C -0.12 -1.08 9.77 -39.49 -0.39 -1.46 16 24 C -0.05 -0.54 5.74 -106.84 -0.61 -1.15 16 25 C -0.11 -0.95 9.77 -39.48 -0.39 -1.34 16 26 C -0.12 -0.98 9.95 -39.93 -0.40 -1.38 16 27 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 28 C -0.10 -1.04 9.20 -39.49 -0.36 -1.40 16 29 C -0.04 -0.48 5.74 -106.83 -0.61 -1.09 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.58 6.83 -51.93 -0.35 0.22 16 32 H 0.07 1.09 7.36 -51.93 -0.38 0.71 16 33 H 0.07 0.80 7.25 -51.93 -0.38 0.42 16 34 H 0.06 0.62 8.06 -51.93 -0.42 0.21 16 35 H 0.34 3.88 7.51 -39.29 -0.30 3.59 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.14 7.16 -51.93 -0.37 0.77 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.14 1.48 6.96 -52.48 -0.37 1.12 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 45 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 46 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.13 1.13 6.48 -52.49 -0.34 0.79 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -30.40 386.03 -10.43 -40.83 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.00 Total: 1.44 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -5.29 Total: -21.03 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 1.07 Total: -43.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.40 -10.43 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886918371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.920 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds