Wall clock time and date at job start Tue Mar 31 2020 12:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47098 * 2 1 4 4 H 1.08998 * 109.46719 * 182.57134 * 3 2 1 5 5 N 1.46894 * 109.46941 * 302.57276 * 3 2 1 6 6 C 1.46902 * 110.99879 * 278.16706 * 5 3 2 7 7 C 1.52999 * 109.46890 * 174.83938 * 6 5 3 8 8 H 1.09005 * 109.47402 * 55.00590 * 7 6 5 9 9 C 1.47193 * 109.47296 * 294.99929 * 7 6 5 10 10 N 4.79231 * 62.32017 * 289.34390 * 2 1 3 11 11 C 1.53004 * 109.47229 * 174.99857 * 7 6 5 12 12 C 1.50700 * 109.47465 * 185.00012 * 11 7 6 13 13 H 1.08001 * 119.99793 * 0.02562 * 12 11 7 14 14 C 1.37871 * 119.99918 * 180.02562 * 12 11 7 15 15 N 1.31520 * 120.00365 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47141 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47193 * 119.99633 * 16 14 12 19 19 H 1.48497 * 109.47471 * 239.99764 * 16 14 12 20 20 C 1.50697 * 109.46910 * 62.57509 * 3 2 1 21 21 C 1.36124 * 120.17256 * 264.99462 * 20 3 2 22 22 C 1.39332 * 120.99508 * 179.97438 * 21 20 3 23 23 C 1.36133 * 120.98342 * 0.02562 * 22 21 20 24 24 C 1.40495 * 119.65418 * 0.02562 * 23 22 21 25 25 C 1.40545 * 121.28662 * 179.97438 * 24 23 22 26 26 C 1.36095 * 119.65070 * 180.02562 * 25 24 23 27 27 C 1.39381 * 120.99559 * 0.02816 * 26 25 24 28 28 C 1.36083 * 120.99210 * 359.95138 * 27 26 25 29 29 C 1.40502 * 120.17532 * 84.97822 * 20 3 2 30 30 H 1.09005 * 109.47172 * 174.53546 * 1 2 3 31 31 H 1.08997 * 109.47421 * 294.53847 * 1 2 3 32 32 H 1.09002 * 109.47261 * 54.53687 * 1 2 3 33 33 H 1.09001 * 109.47321 * 239.99616 * 2 1 3 34 34 H 1.09004 * 109.47086 * 120.00288 * 2 1 3 35 35 H 1.00903 * 111.00012 * 154.22016 * 5 3 2 36 36 H 1.09000 * 109.47352 * 294.83785 * 6 5 3 37 37 H 1.09004 * 109.47291 * 54.83994 * 6 5 3 38 38 H 1.08998 * 109.47390 * 305.00471 * 11 7 6 39 39 H 1.09008 * 109.47051 * 65.00121 * 11 7 6 40 40 H 0.96997 * 119.99511 * 179.97438 * 15 14 12 41 41 H 1.08005 * 119.50711 * 0.02562 * 21 20 3 42 42 H 1.07998 * 119.51157 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.16963 * 179.71808 * 23 22 21 44 44 H 1.08003 * 120.17822 * 0.02562 * 25 24 23 45 45 H 1.08007 * 119.49821 * 179.97438 * 26 25 24 46 46 H 1.07995 * 119.50310 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.17549 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4428 -0.0461 5 7 1.5002 2.1527 -1.1671 6 6 2.2911 1.8643 -2.3709 7 6 1.6266 2.5151 -3.5857 8 1 1.4921 3.5805 -3.3991 9 6 0.3156 1.8889 -3.8220 10 7 -0.6962 1.4057 -4.0043 11 6 2.5136 2.3212 -4.8172 12 6 1.9209 3.0659 -5.9856 13 1 1.0035 3.6222 -5.8621 14 6 2.5498 3.0370 -7.2122 15 7 3.6673 2.3600 -7.3625 16 14 1.8147 3.9595 -8.6607 17 1 0.5647 4.6375 -8.2329 18 1 2.7855 4.9729 -9.1464 19 1 1.5099 3.0021 -9.7542 20 6 1.5904 2.1342 1.2611 21 6 0.4523 2.8811 1.2633 22 6 0.0206 3.5275 2.4197 23 6 0.7247 3.4312 3.5808 24 6 1.9050 2.6700 3.6170 25 6 2.6588 2.5478 4.7968 26 6 3.7974 1.8023 4.7941 27 6 4.2299 1.1566 3.6371 28 6 3.5257 1.2520 2.4765 29 6 2.3435 2.0113 2.4409 30 1 -0.3634 -1.0230 -0.0979 31 1 -0.3634 0.4268 0.9348 32 1 -0.3634 0.5962 -0.8370 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.4519 3.1458 -0.9956 36 1 3.2974 2.2650 -2.2492 37 1 2.3451 0.7859 -2.5206 38 1 3.5122 2.7059 -4.6100 39 1 2.5758 1.2596 -5.0568 40 1 4.1095 2.3395 -8.2256 41 1 -0.1251 2.9734 0.3553 42 1 -0.8857 4.1142 2.3943 43 1 0.3804 3.9414 4.4682 44 1 2.3363 3.0428 5.7009 45 1 4.3750 1.7103 5.7021 46 1 5.1373 0.5715 3.6620 47 1 3.8726 0.7459 1.5878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886918371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:20 Heat of formation + Delta-G solvation = 38.541888 kcal Electronic energy + Delta-G solvation = -26180.887224 eV Core-core repulsion = 22712.898857 eV Total energy + Delta-G solvation = -3467.988367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.55015 -39.17734 -37.85167 -36.76554 -35.61825 -34.45838 -32.96801 -32.21640 -31.14919 -30.10324 -28.37225 -26.59793 -24.68373 -24.20974 -23.59808 -23.40315 -22.67159 -20.53068 -18.73236 -18.41799 -18.21883 -17.74673 -17.24758 -16.59860 -16.30021 -15.99321 -15.70774 -15.22128 -14.92747 -14.84082 -14.70993 -14.35049 -14.27917 -14.19669 -14.05455 -13.74327 -13.63670 -13.46034 -13.17612 -13.06158 -12.92883 -12.80557 -12.48760 -12.36821 -12.30995 -12.15523 -12.07499 -11.85144 -11.80246 -11.74069 -11.44003 -11.24161 -11.07907 -10.67091 -10.55203 -9.46485 -9.31771 -8.68873 -8.19246 -6.27016 -0.32735 0.16269 1.17433 1.38833 1.42136 1.52302 2.12041 2.16619 2.18937 2.41641 3.11132 3.16639 3.23874 3.38801 3.60646 3.94917 4.01575 4.09151 4.13817 4.18345 4.23498 4.36265 4.38268 4.43886 4.49933 4.53916 4.59468 4.69666 4.75575 4.78674 4.87740 4.91391 5.00762 5.04235 5.11086 5.15659 5.24775 5.34082 5.38333 5.44125 5.48151 5.54121 5.59454 5.63476 5.68233 5.75887 5.80503 5.98741 6.08795 6.18315 6.23107 6.50382 6.85066 6.97846 7.41602 8.91848 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.002608 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.079507 B =10735.180396 C =11056.041019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C 0.134 3.866 4 H 0.062 0.938 5 N -0.687 5.687 6 C 0.078 3.922 7 C 0.022 3.978 8 H 0.118 0.882 9 C 0.267 3.733 10 N -0.513 5.513 11 C 0.038 3.962 12 C -0.536 4.536 13 H 0.054 0.946 14 C 0.011 3.989 15 N -0.924 5.924 16 Si 0.947 3.053 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.286 1.286 20 C -0.076 4.076 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.072 4.072 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.060 4.060 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.350 0.650 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.000 1.000 40 H 0.263 0.737 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.175 0.769 27.695 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.142 4.142 3 C 0.024 3.976 4 H 0.080 0.920 5 N -0.320 5.320 6 C -0.052 4.052 7 C 0.000 4.000 8 H 0.136 0.864 9 C -0.050 4.050 10 N -0.191 5.191 11 C -0.001 4.001 12 C -0.574 4.574 13 H 0.072 0.928 14 C -0.188 4.188 15 N -0.564 5.564 16 Si 0.773 3.227 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.212 1.212 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.072 4.072 25 C -0.132 4.132 26 C -0.142 4.142 27 C -0.139 4.139 28 C -0.141 4.141 29 C -0.061 4.061 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.158 0.842 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.697 -0.477 27.159 27.172 hybrid contribution 0.787 0.913 -1.150 1.666 sum 0.090 0.437 26.008 26.012 Atomic orbital electron populations 1.21567 0.95816 1.00390 1.01552 1.21457 0.96636 0.94561 1.01518 1.20323 0.97064 0.93688 0.86477 0.92035 1.60514 1.54319 1.14727 1.02403 1.21901 0.95047 1.00889 0.87349 1.19127 0.84186 0.99886 0.96757 0.86436 1.29301 0.94157 0.91796 0.89698 1.80983 1.14158 1.11743 1.12202 1.18987 0.94752 0.96174 0.90179 1.21582 1.08856 1.31092 0.95896 0.92806 1.25706 0.95328 0.96349 1.01433 1.70040 1.18516 1.42690 1.25127 0.85658 0.78763 0.78658 0.79577 1.19390 1.19831 1.21188 1.19662 0.95765 0.98255 0.93930 1.20918 0.96053 0.96736 0.99144 1.21116 1.00630 0.99584 0.92661 1.21292 0.94122 0.98621 0.99180 1.18366 0.96451 0.98549 0.93823 1.21319 0.95255 0.99323 0.97254 1.21187 0.96852 0.97043 0.99088 1.21174 1.00416 0.99564 0.92737 1.21265 0.94463 0.98989 0.99409 1.18104 0.95950 0.98785 0.93225 0.93980 0.93243 0.92905 0.92249 0.91216 0.82965 0.91536 0.91008 0.94717 0.98145 0.92760 0.85254 0.84378 0.83605 0.83620 0.83725 0.84158 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.22 71.98 0.66 -2.73 16 2 C -0.10 -2.32 5.71 30.59 0.17 -2.15 16 3 C 0.13 2.86 1.93 44.17 0.09 2.94 16 4 H 0.06 1.25 6.46 -2.39 -0.02 1.24 16 5 N -0.69 -16.24 4.17 -495.46 -2.07 -18.31 16 6 C 0.08 2.13 4.84 86.30 0.42 2.55 16 7 C 0.02 0.78 2.40 -12.60 -0.03 0.75 16 8 H 0.12 3.71 8.14 -2.38 -0.02 3.69 16 9 C 0.27 10.82 13.67 89.44 1.22 12.04 16 10 N -0.51 -22.91 18.54 20.00 0.37 -22.54 16 11 C 0.04 1.73 4.42 29.85 0.13 1.86 16 12 C -0.54 -28.29 8.60 25.60 0.22 -28.07 16 13 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 14 C 0.01 0.58 5.46 84.65 0.46 1.04 16 15 N -0.92 -52.99 13.29 21.45 0.28 -52.71 16 16 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 C -0.08 -1.61 4.31 -19.81 -0.09 -1.69 16 21 C -0.11 -2.29 7.60 22.04 0.17 -2.12 16 22 C -0.12 -2.19 9.95 22.04 0.22 -1.97 16 23 C -0.11 -1.94 9.77 22.33 0.22 -1.72 16 24 C -0.07 -1.38 5.74 -21.30 -0.12 -1.50 16 25 C -0.11 -1.73 9.77 22.33 0.22 -1.51 16 26 C -0.12 -1.72 9.95 22.05 0.22 -1.50 16 27 C -0.12 -1.86 9.95 22.04 0.22 -1.64 16 28 C -0.12 -2.28 9.20 22.33 0.21 -2.08 16 29 C -0.06 -1.26 5.74 -21.30 -0.12 -1.38 16 30 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 1.19 6.83 -2.39 -0.02 1.18 16 32 H 0.05 1.55 7.36 -2.39 -0.02 1.54 16 33 H 0.06 1.41 7.25 -2.39 -0.02 1.39 16 34 H 0.07 1.42 8.06 -2.38 -0.02 1.40 16 35 H 0.35 7.58 7.51 -89.69 -0.67 6.90 16 36 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.07 2.07 7.16 -2.39 -0.02 2.05 16 38 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 40 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.13 2.79 6.96 -2.91 -0.02 2.77 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 44 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 47 H 0.13 2.20 6.48 -2.91 -0.02 2.18 16 Total: -1.00 -64.94 386.03 5.40 -59.54 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.30 Total: 17.35 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 4.48 Total: -28.88 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -1.41 Total: -93.55 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -64.94 5.40 -59.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886918371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.085 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds