Wall clock time and date at job start Tue Mar 31 2020 14:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00146 * 2 1 4 4 C 1.53001 * 109.47686 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47372 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75329 * 125.00196 * 5 4 3 7 7 C 1.38036 * 107.41736 * 180.02562 * 6 5 4 8 8 C 1.47433 * 126.41570 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99771 * 353.14025 * 8 7 6 10 10 N 1.34775 * 119.99890 * 173.14577 * 8 7 6 11 11 C 1.47028 * 125.64663 * 174.16686 * 10 8 7 12 12 C 1.54319 * 107.27238 * 178.95925 * 11 10 8 13 13 H 1.09003 * 110.87403 * 96.23982 * 12 11 10 14 14 C 1.52993 * 110.71930 * 219.44302 * 12 11 10 15 15 C 1.55159 * 102.94270 * 337.80940 * 12 11 10 16 16 H 1.09010 * 110.99813 * 277.39084 * 15 12 11 17 17 N 1.46497 * 111.00616 * 153.57782 * 15 12 11 18 18 C 1.36936 * 119.99811 * 154.99967 * 17 15 12 19 19 H 1.07996 * 120.00224 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99750 * 179.97438 * 18 17 15 21 21 N 1.31628 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00262 * 180.27485 * 20 18 17 23 23 H 1.48496 * 109.47275 * 179.72906 * 22 20 18 24 24 H 1.48503 * 109.47049 * 299.72669 * 22 20 18 25 25 H 1.48497 * 109.46977 * 59.72388 * 22 20 18 26 26 C 1.47422 * 125.65160 * 354.19085 * 10 8 7 27 27 C 1.41290 * 107.17001 * 0.22608 * 7 6 5 28 28 N 1.30441 * 108.02325 * 359.61438 * 27 7 6 29 29 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47028 * 300.00339 * 1 2 3 31 31 H 1.08999 * 109.47068 * 59.99645 * 1 2 3 32 32 H 1.08998 * 109.47261 * 59.99825 * 3 2 1 33 33 H 1.09003 * 109.47297 * 300.00335 * 3 2 1 34 34 H 1.08998 * 109.47037 * 59.99537 * 4 3 2 35 35 H 1.09002 * 109.46614 * 299.99963 * 4 3 2 36 36 H 1.08001 * 126.28934 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.87991 * 59.53671 * 11 10 8 38 38 H 1.09000 * 109.87963 * 298.38226 * 11 10 8 39 39 H 1.09008 * 109.47012 * 173.51806 * 14 12 11 40 40 H 1.08990 * 109.47437 * 293.52032 * 14 12 11 41 41 H 1.09005 * 109.47422 * 53.52510 * 14 12 11 42 42 H 0.96998 * 119.99575 * 334.99473 * 17 15 12 43 43 H 0.96994 * 119.99430 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36988 * 85.26729 * 26 10 8 45 45 H 1.09004 * 110.36438 * 322.94433 * 26 10 8 46 46 H 1.08004 * 125.98600 * 179.73948 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0217 2.9858 0.8907 7 6 5.3265 4.2842 0.5349 8 6 6.2618 5.1861 1.2316 9 8 6.7558 4.8495 2.2906 10 7 6.5691 6.3835 0.6949 11 6 7.3857 7.4252 1.3351 12 6 7.4888 8.6016 0.3416 13 1 6.7413 9.3635 0.5629 14 6 8.8950 9.2041 0.3602 15 6 7.1981 7.9282 -1.0257 16 1 8.0952 7.4574 -1.4278 17 7 6.6425 8.8925 -1.9784 18 6 6.7865 8.6859 -3.3244 19 1 7.3101 7.8123 -3.6836 20 6 6.2596 9.5993 -4.2271 21 7 5.6220 10.6643 -3.7892 22 14 6.4494 9.3136 -6.0633 23 1 5.7982 10.4220 -6.8066 24 1 7.8925 9.2657 -6.4102 25 1 5.8085 8.0260 -6.4327 26 6 6.1418 6.8660 -0.6309 27 6 4.5698 4.5890 -0.6187 28 7 3.8680 3.5349 -0.9313 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6439 -0.8908 35 1 3.8574 0.6437 0.8892 36 1 5.4247 2.4422 1.7325 37 1 8.3801 7.0353 1.5525 38 1 6.9065 7.7583 2.2557 39 1 8.9795 9.9538 -0.4266 40 1 9.0775 9.6709 1.3280 41 1 9.6299 8.4168 0.1922 42 1 6.1725 9.6773 -1.6557 43 1 5.2535 11.3023 -4.4200 44 1 5.1526 7.3195 -0.5690 45 1 6.1403 6.0470 -1.3502 46 1 4.5735 5.5294 -1.1499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939639300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:52 Heat of formation + Delta-G solvation = 21.479035 kcal Electronic energy + Delta-G solvation = -27040.346925 eV Core-core repulsion = 23160.769395 eV Total energy + Delta-G solvation = -3879.577531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.48827 -39.48134 -38.37072 -37.35867 -34.27751 -33.99214 -32.44665 -30.76468 -30.51475 -29.48074 -27.59306 -26.92040 -26.02081 -24.13473 -23.76210 -22.61503 -21.23923 -20.72178 -19.84059 -19.30107 -17.58841 -17.21336 -16.71153 -16.64777 -15.96560 -15.84413 -15.75721 -15.25654 -14.74633 -14.44543 -14.29587 -13.91518 -13.66901 -13.51986 -13.26850 -12.97308 -12.73837 -12.67198 -12.62775 -12.35869 -12.09868 -11.78668 -11.72230 -11.60112 -11.14215 -11.02752 -10.95325 -10.65797 -10.60256 -10.26599 -10.18365 -9.96904 -9.80470 -9.67395 -9.62621 -9.00378 -8.79544 -8.24537 -7.09424 -5.86075 -3.16794 1.46120 2.02007 2.22540 3.30106 3.35303 3.40209 3.45553 3.45854 3.61754 4.22133 4.46031 4.51221 4.65184 4.70389 4.79619 4.90433 4.91116 4.95408 5.14051 5.15543 5.22157 5.23211 5.24984 5.26333 5.45594 5.55136 5.59841 5.70099 5.77152 5.85074 5.96211 6.03864 6.23276 6.24641 6.36712 6.39185 6.46846 6.53711 6.59695 6.68206 6.69273 6.87387 7.47656 7.62764 7.86185 8.31289 8.47718 9.43641 9.96956 10.32047 11.35647 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.003148 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.156980 B = 8892.075932 C =11075.940245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.136 3.864 5 N -0.366 5.366 6 C 0.126 3.874 7 C -0.283 4.283 8 C 0.607 3.393 9 O -0.564 6.564 10 N -0.608 5.608 11 C 0.120 3.880 12 C -0.115 4.115 13 H 0.084 0.916 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.069 0.931 17 N -0.709 5.709 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.007 4.007 21 N -0.929 5.929 22 Si 0.907 3.093 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.064 3.936 27 C 0.080 3.920 28 N -0.298 5.298 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.188 0.812 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -16.435 10.440 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.146 5.146 6 C -0.025 4.025 7 C -0.297 4.297 8 C 0.397 3.603 9 O -0.445 6.445 10 N -0.341 5.341 11 C -0.003 4.003 12 C -0.135 4.135 13 H 0.102 0.898 14 C -0.191 4.191 15 C 0.064 3.936 16 H 0.087 0.913 17 N -0.348 5.348 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.062 4.062 27 C -0.107 4.107 28 N -0.117 5.117 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.204 0.796 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.222 0.778 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.483 -17.517 9.986 20.895 hybrid contribution 0.115 0.711 -0.432 0.840 sum -5.368 -16.806 9.554 20.063 Atomic orbital electron populations 1.22781 0.79931 1.03058 1.00475 1.87766 1.20599 1.26967 1.95630 1.22664 0.92502 0.85304 1.02262 1.21445 0.92708 0.78855 1.05560 1.48356 1.33123 1.12103 1.21025 1.22905 0.91061 0.94326 0.94179 1.20228 1.10012 0.96150 1.03340 1.16845 0.80036 0.79703 0.83723 1.90727 1.55243 1.74980 1.23510 1.48204 1.51568 1.15019 1.19276 1.21958 0.95169 0.87387 0.95822 1.22529 0.98750 0.96270 0.95987 0.89770 1.21658 0.94944 1.01016 1.01522 1.21388 0.94000 0.89651 0.88552 0.91264 1.42291 1.66010 1.24634 1.01910 1.19199 1.30487 1.06005 0.82256 0.91010 1.24751 1.00517 0.97017 0.98066 1.69649 1.41482 1.12866 1.33642 0.86281 0.77637 0.77100 0.85235 1.21687 1.21186 1.21099 1.23797 1.00919 0.99219 0.82273 1.24959 0.92762 0.98275 0.94724 1.77241 1.24540 0.96760 1.13168 0.89200 0.93814 0.93608 0.92561 0.91292 0.88371 0.87456 0.79552 0.91582 0.92043 0.91350 0.93258 0.92919 0.77840 0.93294 0.91044 0.90581 0.77792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.41 10.70 -35.23 -0.38 -3.78 16 3 C 0.05 0.43 6.11 37.16 0.23 0.66 16 4 C 0.14 1.11 6.86 -4.04 -0.03 1.09 16 5 N -0.37 -4.22 3.65 -60.81 -0.22 -4.44 16 6 C 0.13 1.51 11.26 -16.56 -0.19 1.32 16 7 C -0.28 -4.15 6.04 -105.07 -0.63 -4.78 16 8 C 0.61 10.15 7.83 -12.52 -0.10 10.05 16 9 O -0.56 -10.66 17.24 5.28 0.09 -10.57 16 10 N -0.61 -9.77 3.33 -171.78 -0.57 -10.34 16 11 C 0.12 1.79 6.47 -3.06 -0.02 1.77 16 12 C -0.12 -1.77 3.20 -88.79 -0.28 -2.06 16 13 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 14 C -0.13 -1.89 9.16 37.15 0.34 -1.55 16 15 C 0.18 3.21 3.16 -65.78 -0.21 3.00 16 16 H 0.07 1.31 8.00 -51.92 -0.42 0.89 16 17 N -0.71 -16.09 5.24 -51.35 -0.27 -16.36 16 18 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.93 -26.57 13.06 55.49 0.72 -25.85 16 22 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.06 1.05 4.79 -2.53 -0.01 1.04 16 27 C 0.08 1.17 10.27 -16.98 -0.17 1.00 16 28 N -0.30 -4.25 12.33 30.86 0.38 -3.87 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.19 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.07 0.97 7.76 -51.93 -0.40 0.57 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.39 9.41 7.76 -40.82 -0.32 9.09 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.07 1.21 7.71 -51.93 -0.40 0.81 16 45 H 0.08 1.24 5.96 -51.93 -0.31 0.94 16 46 H 0.21 2.96 4.88 -52.48 -0.26 2.70 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -31.73 381.71 -6.85 -38.58 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.13 Total: 8.40 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -0.21 Total: 6.05 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.04 Total: -60.86 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.29 Total: -14.36 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.73 -6.85 -38.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939639300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.062 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds