Wall clock time and date at job start Tue Mar 31 2020 14:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00146 * 2 1 4 4 C 1.53001 * 109.47686 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47372 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75329 * 125.00196 * 5 4 3 7 7 C 1.38036 * 107.41736 * 180.02562 * 6 5 4 8 8 C 1.47433 * 126.41570 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99771 * 353.14025 * 8 7 6 10 10 N 1.34775 * 119.99890 * 173.14577 * 8 7 6 11 11 C 1.47028 * 125.64663 * 174.16686 * 10 8 7 12 12 C 1.54319 * 107.27238 * 178.95925 * 11 10 8 13 13 H 1.09003 * 110.87403 * 96.23982 * 12 11 10 14 14 C 1.52993 * 110.71930 * 219.44302 * 12 11 10 15 15 C 1.55159 * 102.94270 * 337.80940 * 12 11 10 16 16 H 1.09010 * 110.99813 * 277.39084 * 15 12 11 17 17 N 1.46497 * 111.00616 * 153.57782 * 15 12 11 18 18 C 1.36936 * 119.99811 * 154.99967 * 17 15 12 19 19 H 1.07996 * 120.00224 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99750 * 179.97438 * 18 17 15 21 21 N 1.31628 * 119.99867 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00262 * 180.27485 * 20 18 17 23 23 H 1.48496 * 109.47275 * 179.72906 * 22 20 18 24 24 H 1.48503 * 109.47049 * 299.72669 * 22 20 18 25 25 H 1.48497 * 109.46977 * 59.72388 * 22 20 18 26 26 C 1.47422 * 125.65160 * 354.19085 * 10 8 7 27 27 C 1.41290 * 107.17001 * 0.22608 * 7 6 5 28 28 N 1.30441 * 108.02325 * 359.61438 * 27 7 6 29 29 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47028 * 300.00339 * 1 2 3 31 31 H 1.08999 * 109.47068 * 59.99645 * 1 2 3 32 32 H 1.08998 * 109.47261 * 59.99825 * 3 2 1 33 33 H 1.09003 * 109.47297 * 300.00335 * 3 2 1 34 34 H 1.08998 * 109.47037 * 59.99537 * 4 3 2 35 35 H 1.09002 * 109.46614 * 299.99963 * 4 3 2 36 36 H 1.08001 * 126.28934 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.87991 * 59.53671 * 11 10 8 38 38 H 1.09000 * 109.87963 * 298.38226 * 11 10 8 39 39 H 1.09008 * 109.47012 * 173.51806 * 14 12 11 40 40 H 1.08990 * 109.47437 * 293.52032 * 14 12 11 41 41 H 1.09005 * 109.47422 * 53.52510 * 14 12 11 42 42 H 0.96998 * 119.99575 * 334.99473 * 17 15 12 43 43 H 0.96994 * 119.99430 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36988 * 85.26729 * 26 10 8 45 45 H 1.09004 * 110.36438 * 322.94433 * 26 10 8 46 46 H 1.08004 * 125.98600 * 179.73948 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 5.0217 2.9858 0.8907 7 6 5.3265 4.2842 0.5349 8 6 6.2618 5.1861 1.2316 9 8 6.7558 4.8495 2.2906 10 7 6.5691 6.3835 0.6949 11 6 7.3857 7.4252 1.3351 12 6 7.4888 8.6016 0.3416 13 1 6.7413 9.3635 0.5629 14 6 8.8950 9.2041 0.3602 15 6 7.1981 7.9282 -1.0257 16 1 8.0952 7.4574 -1.4278 17 7 6.6425 8.8925 -1.9784 18 6 6.7865 8.6859 -3.3244 19 1 7.3101 7.8123 -3.6836 20 6 6.2596 9.5993 -4.2271 21 7 5.6220 10.6643 -3.7892 22 14 6.4494 9.3136 -6.0633 23 1 5.7982 10.4220 -6.8066 24 1 7.8925 9.2657 -6.4102 25 1 5.8085 8.0260 -6.4327 26 6 6.1418 6.8660 -0.6309 27 6 4.5698 4.5890 -0.6187 28 7 3.8680 3.5349 -0.9313 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8568 0.6439 -0.8908 35 1 3.8574 0.6437 0.8892 36 1 5.4247 2.4422 1.7325 37 1 8.3801 7.0353 1.5525 38 1 6.9065 7.7583 2.2557 39 1 8.9795 9.9538 -0.4266 40 1 9.0775 9.6709 1.3280 41 1 9.6299 8.4168 0.1922 42 1 6.1725 9.6773 -1.6557 43 1 5.2535 11.3023 -4.4200 44 1 5.1526 7.3195 -0.5690 45 1 6.1403 6.0470 -1.3502 46 1 4.5735 5.5294 -1.1499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939639300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:51 Heat of formation + Delta-G solvation = -0.009671 kcal Electronic energy + Delta-G solvation = -27041.278746 eV Core-core repulsion = 23160.769395 eV Total energy + Delta-G solvation = -3880.509351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.52426 -40.77024 -39.02428 -38.72779 -35.83653 -35.08416 -33.81627 -32.50290 -31.52406 -30.37722 -29.16974 -27.71866 -26.94713 -25.91594 -24.55866 -23.95230 -22.47100 -21.76308 -21.21350 -20.47975 -19.10065 -18.53061 -17.62312 -17.44832 -17.23799 -17.00835 -16.55020 -16.34590 -16.22027 -15.54537 -15.46801 -15.29693 -15.04443 -14.56710 -14.40634 -14.39878 -14.17120 -13.93045 -13.73534 -13.12970 -13.07317 -12.98384 -12.83063 -12.80406 -12.71793 -12.37385 -12.21984 -12.11147 -12.02252 -11.93558 -11.67205 -11.37552 -10.99539 -10.84919 -10.80145 -10.66351 -9.90903 -9.53068 -8.99314 -7.91295 -5.20186 0.46038 1.06461 1.18566 1.52287 1.53208 1.58991 2.04917 2.39377 2.59661 2.70383 3.37023 3.40254 3.61157 3.76702 3.83455 3.85035 3.87252 3.99674 4.03022 4.17437 4.22555 4.27959 4.39788 4.43623 4.47418 4.48817 4.55847 4.61130 4.62861 4.68506 4.76552 4.81083 4.89676 4.95696 5.14073 5.15586 5.23318 5.34169 5.43565 5.50375 5.59123 5.76046 5.99820 6.29685 6.43598 6.55972 7.18933 7.38026 8.09360 8.34083 9.31154 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010754 B = 0.003148 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.156980 B = 8892.075932 C =11075.940245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.356 5.356 6 C 0.146 3.854 7 C -0.311 4.311 8 C 0.607 3.393 9 O -0.588 6.588 10 N -0.610 5.610 11 C 0.122 3.878 12 C -0.105 4.105 13 H 0.080 0.920 14 C -0.129 4.129 15 C 0.170 3.830 16 H 0.064 0.936 17 N -0.717 5.717 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.067 4.067 21 N -0.965 5.965 22 Si 0.965 3.035 23 H -0.299 1.299 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.080 3.920 27 C 0.075 3.925 28 N -0.320 5.320 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.219 0.781 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 -18.569 11.415 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.135 5.135 6 C -0.006 4.006 7 C -0.326 4.326 8 C 0.398 3.602 9 O -0.471 6.471 10 N -0.341 5.341 11 C -0.001 4.001 12 C -0.124 4.124 13 H 0.099 0.901 14 C -0.186 4.186 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.356 5.356 18 C -0.371 4.371 19 H 0.095 0.905 20 C -0.259 4.259 21 N -0.615 5.615 22 Si 0.794 3.206 23 H -0.226 1.226 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.046 4.046 27 C -0.112 4.112 28 N -0.139 5.139 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.236 0.764 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.184 -19.701 10.968 23.136 hybrid contribution -0.006 1.232 -0.653 1.394 sum -5.189 -18.469 10.314 21.781 Atomic orbital electron populations 1.22972 0.78757 1.04327 1.00852 1.87743 1.21929 1.26766 1.95665 1.22543 0.92800 0.85337 1.01516 1.21777 0.92383 0.77267 1.07542 1.48586 1.32482 1.12511 1.19955 1.23350 0.89737 0.93398 0.94114 1.20197 1.10996 0.97295 1.04083 1.17089 0.79908 0.79712 0.83444 1.90705 1.56406 1.75444 1.24514 1.48212 1.51666 1.15305 1.18948 1.21994 0.95534 0.86776 0.95771 1.22430 0.99589 0.96301 0.94117 0.90119 1.21614 0.94107 1.00718 1.02170 1.21529 0.93875 0.89528 0.89117 0.91758 1.42358 1.66253 1.25243 1.01742 1.19541 1.28596 1.05334 0.83645 0.90496 1.25434 1.01471 0.97345 1.01684 1.69790 1.43419 1.13925 1.34349 0.85349 0.77571 0.76654 0.81001 1.22551 1.20609 1.20538 1.23446 0.99825 0.98527 0.82754 1.24841 0.93136 0.98338 0.94931 1.77191 1.24990 0.97368 1.14396 0.87553 0.93107 0.93594 0.92487 0.92935 0.87730 0.84164 0.76415 0.90865 0.91128 0.93390 0.90826 0.92176 0.78977 0.94065 0.91610 0.90485 0.78572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.26 10.70 -148.98 -1.59 -7.86 16 3 C 0.06 0.87 6.11 71.98 0.44 1.31 16 4 C 0.13 1.80 6.86 86.38 0.59 2.39 16 5 N -0.36 -7.48 3.65 -346.31 -1.26 -8.74 16 6 C 0.15 3.15 11.26 84.27 0.95 4.10 16 7 C -0.31 -8.75 6.04 -20.15 -0.12 -8.87 16 8 C 0.61 19.61 7.83 86.67 0.68 20.28 16 9 O -0.59 -21.35 17.24 -4.03 -0.07 -21.42 16 10 N -0.61 -19.04 3.33 -815.65 -2.71 -21.76 16 11 C 0.12 3.47 6.47 86.73 0.56 4.03 16 12 C -0.10 -3.13 3.20 -9.61 -0.03 -3.16 16 13 H 0.08 2.50 8.00 -2.39 -0.02 2.48 16 14 C -0.13 -3.45 9.16 71.98 0.66 -2.79 16 15 C 0.17 6.14 3.16 46.39 0.15 6.29 16 16 H 0.06 2.40 8.00 -2.38 -0.02 2.38 16 17 N -0.72 -32.88 5.24 -316.37 -1.66 -34.54 16 18 C -0.24 -12.34 9.96 84.03 0.84 -11.50 16 19 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 20 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 21 N -0.96 -56.29 13.06 21.65 0.28 -56.01 16 22 Si 0.96 44.46 29.55 68.60 2.03 46.48 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C 0.08 2.64 4.79 86.86 0.42 3.05 16 27 C 0.07 2.15 10.27 85.65 0.88 3.03 16 28 N -0.32 -8.86 12.33 -56.28 -0.69 -9.55 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.14 1.06 8.06 -2.39 -0.02 1.04 16 36 H 0.22 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.07 2.01 7.76 -2.39 -0.02 1.99 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.52 8.06 -2.38 -0.02 1.50 16 42 H 0.38 18.72 7.76 -92.71 -0.72 18.00 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.07 2.25 7.71 -2.39 -0.02 2.23 16 45 H 0.08 2.52 5.96 -2.38 -0.01 2.51 16 46 H 0.20 5.79 4.88 -2.91 -0.01 5.78 16 Total: -1.00 -67.79 381.71 2.31 -65.49 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.27 Total: 31.37 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 7.72 Total: 16.54 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -6.05 Total: -130.60 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.66 Total: -29.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -67.79 2.31 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939639300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.476 kcal (2) G-P(sol) polarization free energy of solvation -67.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds