Wall clock time and date at job start Tue Mar 31 2020 14:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35777 * 116.99809 * 2 1 4 4 C 1.35585 * 126.08129 * 182.57450 * 3 2 1 5 5 C 1.41065 * 107.79737 * 180.14856 * 4 3 2 6 6 C 1.47717 * 125.97916 * 179.86568 * 5 4 3 7 7 O 1.21563 * 120.00539 * 359.71417 * 6 5 4 8 8 N 1.34787 * 119.99593 * 179.71195 * 6 5 4 9 9 C 1.46497 * 119.99850 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.45319 * 35.03233 * 9 8 6 11 11 C 1.53046 * 109.45917 * 275.06709 * 9 8 6 12 12 C 1.53188 * 109.31135 * 178.61706 * 11 9 8 13 13 N 1.46918 * 108.77929 * 54.63669 * 12 11 9 14 14 C 1.36935 * 120.63426 * 126.41392 * 13 12 11 15 15 H 1.07998 * 119.99741 * 330.65712 * 14 13 12 16 16 C 1.38810 * 120.00456 * 150.66282 * 14 13 12 17 17 N 1.31612 * 120.00193 * 161.90941 * 16 14 13 18 18 Si 1.86801 * 119.99766 * 341.90977 * 16 14 13 19 19 H 1.48497 * 109.47306 * 95.09657 * 18 16 14 20 20 H 1.48501 * 109.47193 * 215.09564 * 18 16 14 21 21 H 1.48502 * 109.47179 * 335.09948 * 18 16 14 22 22 C 1.46930 * 118.73848 * 306.39265 * 13 12 11 23 23 C 1.53037 * 109.46117 * 155.00240 * 9 8 6 24 24 H 1.09001 * 109.50051 * 61.42736 * 23 9 8 25 25 C 1.53003 * 109.52427 * 301.35273 * 23 9 8 26 26 N 1.31862 * 108.03244 * 359.60009 * 5 4 3 27 27 N 1.35837 * 126.08094 * 2.28711 * 3 2 1 28 28 C 1.46494 * 125.95502 * 359.97438 * 27 3 2 29 29 H 1.08997 * 109.46712 * 169.51491 * 1 2 3 30 30 H 1.08994 * 109.47248 * 289.51537 * 1 2 3 31 31 H 1.08997 * 109.46742 * 49.51794 * 1 2 3 32 32 H 1.08002 * 126.10612 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99965 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.49266 * 58.66371 * 11 9 8 35 35 H 1.08998 * 109.52343 * 298.58344 * 11 9 8 36 36 H 1.09000 * 109.58597 * 294.84693 * 12 11 9 37 37 H 1.09000 * 109.58473 * 174.42349 * 12 11 9 38 38 H 0.97008 * 120.00028 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.58422 * 293.82297 * 22 13 12 40 40 H 1.08992 * 109.70515 * 173.46669 * 22 13 12 41 41 H 1.09007 * 109.46978 * 300.08417 * 25 23 9 42 42 H 1.08999 * 109.46965 * 60.07464 * 25 23 9 43 43 H 1.08989 * 109.47429 * 180.02562 * 25 23 9 44 44 H 1.08999 * 109.47499 * 276.68264 * 28 27 3 45 45 H 1.09003 * 109.46974 * 36.68395 * 28 27 3 46 46 H 1.09003 * 109.47377 * 156.68355 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3833 1.4244 -0.0492 5 6 3.5975 2.8184 -0.0259 6 6 4.9100 3.4954 -0.0606 7 8 5.9317 2.8386 -0.1092 8 7 4.9746 4.8416 -0.0385 9 6 6.2761 5.5131 -0.0736 10 1 6.9623 4.9424 -0.6993 11 6 6.8396 5.6074 1.3463 12 6 8.2157 6.2789 1.3017 13 7 8.0890 7.5719 0.6157 14 6 8.5337 8.7231 1.2091 15 1 8.5353 8.8099 2.2856 16 6 8.9822 9.7786 0.4271 17 7 9.0708 10.9871 0.9408 18 14 9.4603 9.4838 -1.3545 19 1 8.3041 9.7903 -2.2345 20 1 10.6019 10.3633 -1.7128 21 1 9.8548 8.0632 -1.5326 22 6 7.4765 7.6063 -0.7194 23 6 6.1087 6.9199 -0.6522 24 1 5.4420 7.4991 -0.0133 25 6 5.5143 6.8268 -2.0590 26 7 2.4210 3.4114 0.0266 27 7 1.4312 2.4206 0.0438 28 6 -0.0146 2.6501 0.0989 29 1 -0.3632 -1.0105 -0.1870 30 1 -0.3633 0.3433 0.9686 31 1 -0.3633 0.6672 -0.7816 32 1 4.1485 0.6637 -0.0958 33 1 4.1593 5.3657 0.0006 34 1 6.9366 4.6063 1.7664 35 1 6.1662 6.1987 1.9668 36 1 8.9148 5.6437 0.7578 37 1 8.5777 6.4381 2.3174 38 1 9.3839 11.7248 0.3941 39 1 8.1153 7.0793 -1.4281 40 1 7.3510 8.6405 -1.0397 41 1 6.1813 6.2474 -2.6976 42 1 4.5416 6.3373 -2.0108 43 1 5.3958 7.8290 -2.4704 44 1 -0.4280 2.6077 -0.9088 45 1 -0.4812 1.8820 0.7157 46 1 -0.2106 3.6315 0.5309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942432478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:21 Heat of formation + Delta-G solvation = 48.853457 kcal Electronic energy + Delta-G solvation = -27700.220024 eV Core-core repulsion = 23821.829538 eV Total energy + Delta-G solvation = -3878.390487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.92616 -39.82283 -38.64503 -37.70046 -34.65198 -33.84135 -32.45832 -31.91583 -30.66397 -29.83694 -28.32507 -26.87664 -26.16857 -25.14480 -23.39639 -22.21690 -21.75763 -20.80471 -20.06523 -19.53598 -18.40801 -17.16642 -16.90828 -16.51644 -16.20047 -15.78107 -15.35037 -15.20848 -14.89884 -14.60993 -14.27676 -14.23839 -13.94409 -13.67057 -13.49424 -13.29374 -13.21362 -13.14863 -12.55130 -12.33050 -11.97742 -11.87320 -11.71761 -11.58977 -11.41235 -11.10730 -10.85371 -10.63729 -10.44926 -10.26827 -10.16992 -9.88031 -9.66463 -9.50403 -9.44063 -8.76154 -8.72532 -8.61012 -6.92244 -5.91635 -3.30167 1.13709 1.77207 1.94830 2.45279 3.25911 3.34521 3.39132 3.51540 3.54811 3.83984 4.23237 4.31183 4.54057 4.55568 4.57984 4.68615 4.93058 4.96540 4.99431 5.04124 5.20182 5.34299 5.40305 5.50906 5.57052 5.62483 5.75908 5.94086 5.95356 6.09414 6.11176 6.17292 6.18770 6.35160 6.43142 6.45365 6.64087 6.69514 6.75181 6.78014 6.89485 6.97383 7.05587 7.66759 8.01159 8.26245 8.36904 8.97298 9.74804 10.13318 11.24378 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.002631 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.042224 B =10638.998272 C =10833.579496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.267 3.733 4 C -0.234 4.234 5 C 0.063 3.937 6 C 0.597 3.403 7 O -0.524 6.524 8 N -0.705 5.705 9 C 0.156 3.844 10 H 0.086 0.914 11 C -0.143 4.143 12 C 0.151 3.849 13 N -0.607 5.607 14 C -0.258 4.258 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.911 5.911 18 Si 0.882 3.118 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.267 1.267 22 C 0.136 3.864 23 C -0.115 4.115 24 H 0.079 0.921 25 C -0.146 4.146 26 N -0.250 5.250 27 N -0.394 5.394 28 C 0.078 3.922 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.404 0.596 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.262 0.738 39 H 0.029 0.971 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.828 -19.969 -3.451 29.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.101 3.899 4 C -0.264 4.264 5 C -0.105 4.105 6 C 0.379 3.621 7 O -0.398 6.398 8 N -0.355 5.355 9 C 0.053 3.947 10 H 0.104 0.896 11 C -0.183 4.183 12 C 0.025 3.975 13 N -0.330 5.330 14 C -0.386 4.386 15 H 0.103 0.897 16 C -0.176 4.176 17 N -0.554 5.554 18 Si 0.713 3.287 19 H -0.216 1.216 20 H -0.232 1.232 21 H -0.192 1.192 22 C 0.010 3.990 23 C -0.136 4.136 24 H 0.097 0.903 25 C -0.204 4.204 26 N -0.081 5.081 27 N -0.192 5.192 28 C -0.063 4.063 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.184 0.816 33 H 0.239 0.761 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.113 0.887 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.646 -19.457 -3.442 29.308 hybrid contribution -0.302 -0.453 -1.017 1.153 sum -21.948 -19.910 -4.459 29.967 Atomic orbital electron populations 1.23651 0.77988 1.05311 1.01550 1.86316 1.21602 1.21575 1.89915 1.19565 0.91083 0.78912 1.00357 1.20373 0.91993 0.95713 1.18325 1.21990 0.92912 0.93084 1.02507 1.16875 0.85732 0.82321 0.77150 1.90814 1.34085 1.65165 1.49732 1.46130 1.10745 1.05496 1.73095 1.21097 0.83121 0.92705 0.97789 0.89553 1.22414 0.99702 1.00495 0.95718 1.20907 0.92815 0.86496 0.97325 1.44394 1.68551 1.03613 1.16466 1.18928 1.36689 0.90061 0.92956 0.89692 1.25330 0.98816 0.95582 0.97867 1.69811 1.49604 0.99117 1.36871 0.86942 0.77614 0.78012 0.86175 1.21633 1.23190 1.19173 1.21384 0.90227 0.99298 0.88126 1.21985 1.00514 0.94867 0.96243 0.90310 1.21804 1.00248 1.01616 0.96714 1.77727 0.95109 1.11022 1.24214 1.49061 1.06944 1.02965 1.60191 1.22506 0.74633 1.05611 1.03525 0.87317 0.91789 0.91752 0.81638 0.76142 0.91998 0.91729 0.95566 0.91516 0.92808 0.95271 0.90711 0.92840 0.93045 0.92487 0.90329 0.88703 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.45 101.05 0.95 0.99 16 2 O -0.29 -2.46 10.57 -19.04 -0.20 -2.66 16 3 C 0.27 2.84 7.77 -16.73 -0.13 2.71 16 4 C -0.23 -2.99 10.59 -39.46 -0.42 -3.40 16 5 C 0.06 0.87 7.09 -82.91 -0.59 0.28 16 6 C 0.60 9.31 7.79 -12.38 -0.10 9.21 16 7 O -0.52 -9.67 16.56 5.31 0.09 -9.58 16 8 N -0.70 -10.29 4.36 -54.75 -0.24 -10.53 16 9 C 0.16 2.61 1.88 -67.89 -0.13 2.49 16 10 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 11 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 12 C 0.15 3.08 6.51 -3.72 -0.02 3.05 16 13 N -0.61 -14.49 2.75 -172.33 -0.47 -14.96 16 14 C -0.26 -7.22 10.04 -15.06 -0.15 -7.38 16 15 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 16 C 0.02 0.66 5.27 -17.43 -0.09 0.57 16 17 N -0.91 -28.03 13.97 55.49 0.78 -27.25 16 18 Si 0.88 22.48 24.35 -169.99 -4.14 18.35 16 19 H -0.29 -7.07 6.75 56.52 0.38 -6.68 16 20 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 21 H -0.27 -6.68 6.33 56.52 0.36 -6.32 16 22 C 0.14 2.95 3.46 -3.71 -0.01 2.93 16 23 C -0.12 -2.00 2.46 -90.50 -0.22 -2.22 16 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 25 C -0.15 -2.16 9.03 37.16 0.34 -1.82 16 26 N -0.25 -3.11 12.26 33.34 0.41 -2.70 16 27 N -0.39 -3.83 4.03 -68.19 -0.28 -4.11 16 28 C 0.08 0.36 9.58 59.84 0.57 0.93 16 29 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.14 6.39 -51.93 -0.33 -0.19 16 31 H 0.06 0.15 5.92 -51.93 -0.31 -0.15 16 32 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.40 5.26 8.00 -40.82 -0.33 4.94 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.03 0.64 6.87 -51.93 -0.36 0.28 16 40 H 0.07 1.76 4.64 -51.93 -0.24 1.52 16 41 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.05 0.67 7.36 -51.93 -0.38 0.28 16 43 H 0.06 0.83 8.14 -51.94 -0.42 0.40 16 44 H 0.08 0.23 7.52 -51.93 -0.39 -0.16 16 45 H 0.09 0.20 4.76 -51.93 -0.25 -0.05 16 46 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -34.69 362.14 -5.56 -40.25 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.82 Total: 2.07 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.15 Total: 5.66 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.20 Total: -59.55 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.11 Total: -12.24 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.69 -5.56 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.105 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds