Wall clock time and date at job start Tue Mar 31 2020 14:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35777 * 116.99809 * 2 1 4 4 C 1.35585 * 126.08129 * 182.57450 * 3 2 1 5 5 C 1.41065 * 107.79737 * 180.14856 * 4 3 2 6 6 C 1.47717 * 125.97916 * 179.86568 * 5 4 3 7 7 O 1.21563 * 120.00539 * 359.71417 * 6 5 4 8 8 N 1.34787 * 119.99593 * 179.71195 * 6 5 4 9 9 C 1.46497 * 119.99850 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.45319 * 35.03233 * 9 8 6 11 11 C 1.53046 * 109.45917 * 275.06709 * 9 8 6 12 12 C 1.53188 * 109.31135 * 178.61706 * 11 9 8 13 13 N 1.46918 * 108.77929 * 54.63669 * 12 11 9 14 14 C 1.36935 * 120.63426 * 126.41392 * 13 12 11 15 15 H 1.07998 * 119.99741 * 330.65712 * 14 13 12 16 16 C 1.38810 * 120.00456 * 150.66282 * 14 13 12 17 17 N 1.31612 * 120.00193 * 161.90941 * 16 14 13 18 18 Si 1.86801 * 119.99766 * 341.90977 * 16 14 13 19 19 H 1.48497 * 109.47306 * 95.09657 * 18 16 14 20 20 H 1.48501 * 109.47193 * 215.09564 * 18 16 14 21 21 H 1.48502 * 109.47179 * 335.09948 * 18 16 14 22 22 C 1.46930 * 118.73848 * 306.39265 * 13 12 11 23 23 C 1.53037 * 109.46117 * 155.00240 * 9 8 6 24 24 H 1.09001 * 109.50051 * 61.42736 * 23 9 8 25 25 C 1.53003 * 109.52427 * 301.35273 * 23 9 8 26 26 N 1.31862 * 108.03244 * 359.60009 * 5 4 3 27 27 N 1.35837 * 126.08094 * 2.28711 * 3 2 1 28 28 C 1.46494 * 125.95502 * 359.97438 * 27 3 2 29 29 H 1.08997 * 109.46712 * 169.51491 * 1 2 3 30 30 H 1.08994 * 109.47248 * 289.51537 * 1 2 3 31 31 H 1.08997 * 109.46742 * 49.51794 * 1 2 3 32 32 H 1.08002 * 126.10612 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99965 * 0.02562 * 8 6 5 34 34 H 1.09002 * 109.49266 * 58.66371 * 11 9 8 35 35 H 1.08998 * 109.52343 * 298.58344 * 11 9 8 36 36 H 1.09000 * 109.58597 * 294.84693 * 12 11 9 37 37 H 1.09000 * 109.58473 * 174.42349 * 12 11 9 38 38 H 0.97008 * 120.00028 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.58422 * 293.82297 * 22 13 12 40 40 H 1.08992 * 109.70515 * 173.46669 * 22 13 12 41 41 H 1.09007 * 109.46978 * 300.08417 * 25 23 9 42 42 H 1.08999 * 109.46965 * 60.07464 * 25 23 9 43 43 H 1.08989 * 109.47429 * 180.02562 * 25 23 9 44 44 H 1.08999 * 109.47499 * 276.68264 * 28 27 3 45 45 H 1.09003 * 109.46974 * 36.68395 * 28 27 3 46 46 H 1.09003 * 109.47377 * 156.68355 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3833 1.4244 -0.0492 5 6 3.5975 2.8184 -0.0259 6 6 4.9100 3.4954 -0.0606 7 8 5.9317 2.8386 -0.1092 8 7 4.9746 4.8416 -0.0385 9 6 6.2761 5.5131 -0.0736 10 1 6.9623 4.9424 -0.6993 11 6 6.8396 5.6074 1.3463 12 6 8.2157 6.2789 1.3017 13 7 8.0890 7.5719 0.6157 14 6 8.5337 8.7231 1.2091 15 1 8.5353 8.8099 2.2856 16 6 8.9822 9.7786 0.4271 17 7 9.0708 10.9871 0.9408 18 14 9.4603 9.4838 -1.3545 19 1 8.3041 9.7903 -2.2345 20 1 10.6019 10.3633 -1.7128 21 1 9.8548 8.0632 -1.5326 22 6 7.4765 7.6063 -0.7194 23 6 6.1087 6.9199 -0.6522 24 1 5.4420 7.4991 -0.0133 25 6 5.5143 6.8268 -2.0590 26 7 2.4210 3.4114 0.0266 27 7 1.4312 2.4206 0.0438 28 6 -0.0146 2.6501 0.0989 29 1 -0.3632 -1.0105 -0.1870 30 1 -0.3633 0.3433 0.9686 31 1 -0.3633 0.6672 -0.7816 32 1 4.1485 0.6637 -0.0958 33 1 4.1593 5.3657 0.0006 34 1 6.9366 4.6063 1.7664 35 1 6.1662 6.1987 1.9668 36 1 8.9148 5.6437 0.7578 37 1 8.5777 6.4381 2.3174 38 1 9.3839 11.7248 0.3941 39 1 8.1153 7.0793 -1.4281 40 1 7.3510 8.6405 -1.0397 41 1 6.1813 6.2474 -2.6976 42 1 4.5416 6.3373 -2.0108 43 1 5.3958 7.8290 -2.4704 44 1 -0.4280 2.6077 -0.9088 45 1 -0.4812 1.8820 0.7157 46 1 -0.2106 3.6315 0.5309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942432478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:20 Heat of formation + Delta-G solvation = 22.145272 kcal Electronic energy + Delta-G solvation = -27701.378178 eV Core-core repulsion = 23821.829538 eV Total energy + Delta-G solvation = -3879.548640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.72878 -41.07388 -39.55659 -38.99393 -36.26266 -34.56935 -34.07341 -33.60094 -32.01207 -30.97655 -28.99539 -27.71075 -27.48479 -26.65129 -24.81998 -23.55551 -22.53021 -22.38763 -21.35975 -20.87297 -19.34551 -18.75105 -17.75589 -17.68069 -17.39200 -16.85937 -16.36394 -16.21356 -16.15621 -16.01613 -15.42330 -15.29216 -15.10915 -14.87876 -14.68493 -14.60726 -14.36426 -14.11943 -14.01146 -13.86683 -13.43311 -13.21692 -12.98549 -12.55242 -12.44065 -12.33657 -12.29086 -12.06084 -11.94916 -11.82723 -11.73171 -11.49103 -11.39313 -11.22234 -10.70716 -10.29866 -10.02560 -9.54477 -8.92371 -8.15039 -5.50338 0.19284 1.04410 1.08386 1.30894 1.43424 1.52274 1.76494 2.24907 2.27460 2.42568 3.07083 3.08000 3.32656 3.63673 3.81055 3.94084 4.00228 4.04592 4.14187 4.26888 4.28186 4.31050 4.38821 4.45468 4.51774 4.54450 4.61420 4.67257 4.69845 4.73808 4.79163 4.87928 4.97213 4.98698 5.01321 5.07979 5.20063 5.23107 5.29679 5.39799 5.48755 5.89044 6.10198 6.14608 6.27610 6.53543 6.91703 7.07900 7.61592 8.03149 9.04749 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030229 B = 0.002631 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.042224 B =10638.998272 C =10833.579496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.300 6.300 3 C 0.281 3.719 4 C -0.263 4.263 5 C 0.044 3.956 6 C 0.600 3.400 7 O -0.558 6.558 8 N -0.693 5.693 9 C 0.166 3.834 10 H 0.077 0.923 11 C -0.131 4.131 12 C 0.148 3.852 13 N -0.620 5.620 14 C -0.247 4.247 15 H 0.052 0.948 16 C -0.033 4.033 17 N -0.958 5.958 18 Si 0.944 3.056 19 H -0.271 1.271 20 H -0.312 1.312 21 H -0.259 1.259 22 C 0.130 3.870 23 C -0.104 4.104 24 H 0.076 0.924 25 C -0.141 4.141 26 N -0.258 5.258 27 N -0.383 5.383 28 C 0.062 3.938 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.414 0.586 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.061 0.939 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.123 0.877 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.957 -21.939 -4.868 33.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.206 6.206 3 C 0.113 3.887 4 C -0.294 4.294 5 C -0.122 4.122 6 C 0.384 3.616 7 O -0.434 6.434 8 N -0.344 5.344 9 C 0.062 3.938 10 H 0.095 0.905 11 C -0.171 4.171 12 C 0.022 3.978 13 N -0.344 5.344 14 C -0.377 4.377 15 H 0.070 0.930 16 C -0.228 4.228 17 N -0.604 5.604 18 Si 0.772 3.228 19 H -0.197 1.197 20 H -0.241 1.241 21 H -0.184 1.184 22 C 0.005 3.995 23 C -0.125 4.125 24 H 0.095 0.905 25 C -0.198 4.198 26 N -0.091 5.091 27 N -0.181 5.181 28 C -0.076 4.076 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.177 0.823 33 H 0.251 0.749 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.141 0.859 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.846 -21.464 -4.870 33.192 hybrid contribution 0.483 0.033 -0.472 0.677 sum -24.363 -21.431 -5.342 32.884 Atomic orbital electron populations 1.24093 0.75227 1.07382 1.03197 1.86339 1.24463 1.20294 1.89487 1.19448 0.90709 0.79905 0.98684 1.20426 0.93333 0.95376 1.20241 1.21620 0.92474 0.93435 1.04635 1.17089 0.86185 0.82193 0.76133 1.90789 1.35521 1.65841 1.51298 1.45884 1.10233 1.05377 1.72859 1.20815 0.83972 0.92361 0.96697 0.90538 1.22247 0.97926 1.00344 0.96601 1.21016 0.94696 0.85282 0.96775 1.44501 1.69046 1.03490 1.17348 1.18848 1.35609 0.91390 0.91827 0.92982 1.25937 0.99500 0.95246 1.02112 1.69938 1.51702 1.00056 1.38671 0.85942 0.77325 0.77852 0.81635 1.19711 1.24089 1.18385 1.21432 0.92466 0.98834 0.86764 1.21788 0.97933 0.94545 0.98245 0.90531 1.21771 1.01170 1.02300 0.94606 1.77631 0.95144 1.11999 1.24277 1.49407 1.08218 1.02141 1.58362 1.23036 0.71758 1.07109 1.05706 0.85185 0.90018 0.90182 0.82323 0.74950 0.91270 0.91918 0.94931 0.92091 0.92926 0.94877 0.92521 0.92552 0.90888 0.92024 0.88091 0.85873 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.02 9.45 113.37 1.07 1.05 16 2 O -0.30 -4.37 10.57 -91.05 -0.96 -5.33 16 3 C 0.28 5.42 7.77 83.46 0.65 6.07 16 4 C -0.26 -6.59 10.59 22.35 0.24 -6.35 16 5 C 0.04 1.19 7.09 42.34 0.30 1.49 16 6 C 0.60 18.31 7.79 86.75 0.68 18.99 16 7 O -0.56 -20.57 16.56 -3.91 -0.06 -20.63 16 8 N -0.69 -19.26 4.36 -445.39 -1.94 -21.21 16 9 C 0.17 5.34 1.88 45.02 0.08 5.43 16 10 H 0.08 2.69 7.58 -2.39 -0.02 2.67 16 11 C -0.13 -4.54 5.65 30.67 0.17 -4.37 16 12 C 0.15 6.02 6.51 86.36 0.56 6.58 16 13 N -0.62 -29.62 2.75 -699.14 -1.92 -31.55 16 14 C -0.25 -14.17 10.04 84.03 0.84 -13.33 16 15 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 16 C -0.03 -1.96 5.27 84.86 0.45 -1.51 16 17 N -0.96 -60.56 13.97 21.65 0.30 -60.26 16 18 Si 0.94 46.87 24.35 68.60 1.67 48.54 16 19 H -0.27 -12.54 6.75 99.48 0.67 -11.87 16 20 H -0.31 -15.80 7.11 99.48 0.71 -15.10 16 21 H -0.26 -12.42 6.33 99.48 0.63 -11.79 16 22 C 0.13 5.51 3.46 86.36 0.30 5.81 16 23 C -0.10 -3.46 2.46 -10.72 -0.03 -3.49 16 24 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 25 C -0.14 -3.79 9.03 71.98 0.65 -3.14 16 26 N -0.26 -5.94 12.26 -48.42 -0.59 -6.54 16 27 N -0.38 -6.41 4.03 -480.58 -1.94 -8.35 16 28 C 0.06 0.33 9.58 127.77 1.22 1.55 16 29 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.08 -0.01 6.39 -2.39 -0.02 -0.02 16 31 H 0.08 0.03 5.92 -2.39 -0.01 0.02 16 32 H 0.16 3.99 8.06 -2.91 -0.02 3.96 16 33 H 0.41 9.97 8.00 -92.71 -0.74 9.23 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 38 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 39 H 0.03 1.39 6.87 -2.39 -0.02 1.37 16 40 H 0.06 2.61 4.64 -2.39 -0.01 2.60 16 41 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.07 1.66 7.36 -2.39 -0.02 1.64 16 43 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.10 0.15 7.52 -2.39 -0.02 0.13 16 45 H 0.12 -0.04 4.76 -2.39 -0.01 -0.05 16 46 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -77.18 362.14 1.89 -75.29 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.15 Total: 15.24 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 7.19 Total: 14.79 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.10 Total: -127.90 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.03 Total: -25.96 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.67 Total: 48.54 kcal Total: -77.18 1.89 -75.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.436 kcal (2) G-P(sol) polarization free energy of solvation -77.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds