Wall clock time and date at job start Tue Mar 31 2020 14:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35766 * 117.00497 * 2 1 4 4 C 1.35583 * 126.08946 * 184.44782 * 3 2 1 5 5 C 1.41058 * 107.80492 * 179.97438 * 4 3 2 6 6 C 1.47714 * 125.98560 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00204 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00355 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00536 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.45888 * 324.99726 * 9 8 6 11 11 C 1.53041 * 109.44732 * 84.96064 * 9 8 6 12 12 C 1.53190 * 109.31263 * 58.65270 * 11 9 8 13 13 N 1.46930 * 108.77515 * 54.63380 * 12 11 9 14 14 C 1.36935 * 120.63061 * 126.41741 * 13 12 11 15 15 H 1.08007 * 119.99500 * 210.60929 * 14 13 12 16 16 C 1.38806 * 120.00366 * 30.60265 * 14 13 12 17 17 N 1.31618 * 120.00012 * 10.22440 * 16 14 13 18 18 Si 1.86801 * 120.00083 * 190.22106 * 16 14 13 19 19 H 1.48502 * 109.46882 * 90.00440 * 18 16 14 20 20 H 1.48498 * 109.47259 * 209.99988 * 18 16 14 21 21 H 1.48496 * 109.47235 * 330.00311 * 18 16 14 22 22 C 1.46926 * 118.73698 * 306.38781 * 13 12 11 23 23 C 1.53039 * 109.46222 * 205.02428 * 9 8 6 24 24 H 1.08997 * 109.49466 * 181.40277 * 23 9 8 25 25 C 1.53003 * 109.49591 * 61.34284 * 23 9 8 26 26 N 1.31866 * 108.03183 * 0.22571 * 5 4 3 27 27 N 1.35844 * 126.08235 * 4.42487 * 3 2 1 28 28 C 1.46505 * 125.94656 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47059 * 306.59996 * 1 2 3 30 30 H 1.09002 * 109.47079 * 66.60005 * 1 2 3 31 31 H 1.08996 * 109.47310 * 186.59737 * 1 2 3 32 32 H 1.08009 * 126.09890 * 359.94683 * 4 3 2 33 33 H 0.97001 * 119.99817 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.49510 * 178.59987 * 11 9 8 35 35 H 1.08998 * 109.49917 * 298.69973 * 11 9 8 36 36 H 1.09000 * 109.59008 * 294.84297 * 12 11 9 37 37 H 1.09000 * 109.59031 * 174.41923 * 12 11 9 38 38 H 0.97003 * 120.00138 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.58999 * 293.82341 * 22 13 12 40 40 H 1.09006 * 109.58773 * 173.39897 * 22 13 12 41 41 H 1.08999 * 109.47294 * 59.99759 * 25 23 9 42 42 H 1.09000 * 109.47162 * 180.02562 * 25 23 9 43 43 H 1.09002 * 109.46631 * 299.99807 * 25 23 9 44 44 H 1.08998 * 109.47382 * 83.11972 * 28 27 3 45 45 H 1.09005 * 109.46858 * 203.12019 * 28 27 3 46 46 H 1.09001 * 109.46975 * 323.11632 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2096 0.0000 4 6 3.3814 1.4252 -0.0850 5 6 3.5964 2.8189 -0.0512 6 6 4.9071 3.4967 -0.1178 7 8 5.9266 2.8410 -0.2103 8 7 4.9730 4.8422 -0.0750 9 6 6.2729 5.5145 -0.1404 10 1 7.0193 4.9131 0.3785 11 6 6.6846 5.6862 -1.6044 12 6 5.6164 6.5026 -2.3387 13 7 5.4084 7.7660 -1.6181 14 6 5.5026 8.9656 -2.2717 15 1 5.8395 9.8443 -1.7417 16 6 5.1653 9.0524 -3.6153 17 7 4.5676 8.0419 -4.2104 18 14 5.5594 10.6033 -4.5791 19 1 6.9110 10.4813 -5.1820 20 1 4.5523 10.7870 -5.6548 21 1 5.5283 11.7744 -3.6666 22 6 5.0968 7.7178 -0.1831 23 6 6.1709 6.8879 0.5271 24 1 7.1312 7.3988 0.4567 25 6 5.7921 6.7133 1.9991 26 7 2.4227 3.4105 0.0556 27 7 1.4335 2.4195 0.0847 28 6 -0.0097 2.6476 0.1917 29 1 -0.3633 0.6127 0.8250 30 1 -0.3633 0.4081 -0.9432 31 1 -0.3634 -1.0208 0.1181 32 1 4.1448 0.6653 -0.1639 33 1 4.1596 5.3655 -0.0008 34 1 7.6400 6.2086 -1.6547 35 1 6.7798 4.7067 -2.0729 36 1 4.6829 5.9406 -2.3678 37 1 5.9509 6.7122 -3.3547 38 1 4.3322 8.1023 -5.1495 39 1 4.1209 7.2549 -0.0364 40 1 5.0885 8.7292 0.2233 41 1 6.5555 6.1205 2.5029 42 1 5.7191 7.6917 2.4740 43 1 4.8313 6.2033 2.0690 44 1 -0.3173 2.5468 1.2325 45 1 -0.2459 3.6515 -0.1614 46 1 -0.5395 1.9145 -0.4165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942432479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:24 Heat of formation + Delta-G solvation = 46.558315 kcal Electronic energy + Delta-G solvation = -28239.193907 eV Core-core repulsion = 24360.703896 eV Total energy + Delta-G solvation = -3878.490011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70510 -39.69542 -38.46329 -37.38378 -34.19291 -33.62647 -32.45029 -31.08844 -30.44364 -29.66962 -28.12849 -26.63903 -25.77720 -25.19592 -23.34597 -21.86395 -21.55407 -21.00221 -19.94885 -18.47084 -18.31715 -16.93051 -16.72531 -16.39058 -15.80345 -15.33581 -15.13184 -14.90881 -14.77857 -14.49465 -14.07967 -13.92616 -13.74010 -13.66623 -13.31458 -13.19107 -13.08997 -12.80032 -12.47335 -12.04223 -11.69723 -11.57665 -11.39603 -11.31997 -11.00640 -10.85374 -10.74618 -10.68950 -10.29796 -10.13284 -9.99170 -9.79810 -9.68407 -9.37597 -9.27501 -8.52560 -8.50593 -8.41932 -6.58395 -5.73764 -3.22401 1.38605 2.00075 2.16654 2.65070 3.39425 3.45844 3.46881 3.52863 3.66043 4.08023 4.40041 4.50721 4.53007 4.71935 4.78219 4.87116 5.12917 5.20564 5.22633 5.39357 5.42082 5.44213 5.56360 5.68759 5.77546 5.83803 5.97159 6.05713 6.16278 6.24126 6.33313 6.36490 6.43437 6.52875 6.71592 6.73758 6.84307 6.98423 7.05215 7.10644 7.28950 7.47181 7.77820 7.83668 7.95224 8.51097 8.52663 9.25916 9.87520 10.45001 11.33193 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.003389 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.196766 B = 8258.920718 C = 9091.769053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.289 6.289 3 C 0.264 3.736 4 C -0.234 4.234 5 C 0.063 3.937 6 C 0.597 3.403 7 O -0.534 6.534 8 N -0.693 5.693 9 C 0.159 3.841 10 H 0.076 0.924 11 C -0.156 4.156 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.251 4.251 15 H 0.064 0.936 16 C 0.003 3.997 17 N -0.904 5.904 18 Si 0.905 3.095 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.151 3.849 23 C -0.119 4.119 24 H 0.082 0.918 25 C -0.142 4.142 26 N -0.244 5.244 27 N -0.394 5.394 28 C 0.077 3.923 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.408 0.592 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.089 0.911 38 H 0.253 0.747 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.345 -13.351 11.179 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.098 3.902 4 C -0.264 4.264 5 C -0.105 4.105 6 C 0.380 3.620 7 O -0.409 6.409 8 N -0.344 5.344 9 C 0.055 3.945 10 H 0.094 0.906 11 C -0.196 4.196 12 C 0.048 3.952 13 N -0.314 5.314 14 C -0.381 4.381 15 H 0.082 0.918 16 C -0.195 4.195 17 N -0.548 5.548 18 Si 0.735 3.265 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.205 1.205 22 C 0.024 3.976 23 C -0.139 4.139 24 H 0.101 0.899 25 C -0.200 4.200 26 N -0.074 5.074 27 N -0.191 5.191 28 C -0.064 4.064 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.182 0.818 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.322 -12.984 11.014 19.411 hybrid contribution -0.359 0.282 -0.656 0.799 sum -9.681 -12.702 10.358 19.035 Atomic orbital electron populations 1.23647 0.78150 1.05187 1.01558 1.86294 1.21487 1.21695 1.90028 1.19543 0.91106 0.78921 1.00633 1.20334 0.92024 0.95668 1.18383 1.21985 0.93047 0.93011 1.02438 1.16839 0.85651 0.82361 0.77153 1.90774 1.34232 1.65414 1.50455 1.46004 1.11157 1.05360 1.71884 1.20977 0.83720 0.92362 0.97400 0.90641 1.22597 1.01492 1.00481 0.95001 1.20772 0.93388 0.84536 0.96517 1.44042 1.81195 1.02868 1.03312 1.19178 1.37755 0.87863 0.93322 0.91796 1.25146 0.98364 0.97428 0.98566 1.69982 1.42858 1.30906 1.11059 0.86259 0.77573 0.82955 0.79747 1.21460 1.21785 1.20484 1.20924 0.93227 0.97254 0.86173 1.21949 1.02294 0.95612 0.94081 0.89922 1.21774 1.01113 1.01117 0.96034 1.77808 0.95205 1.10780 1.23625 1.49070 1.07136 1.03001 1.59909 1.22522 0.74862 1.05840 1.03154 0.91709 0.91870 0.87391 0.81763 0.75527 0.91708 0.92581 0.96366 0.89252 0.93680 0.96748 0.92534 0.93233 0.92772 0.93012 0.90431 0.88136 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.39 101.05 0.95 1.00 16 2 O -0.29 -3.00 10.57 -19.01 -0.20 -3.20 16 3 C 0.26 3.40 7.78 -16.72 -0.13 3.27 16 4 C -0.23 -3.51 10.59 -39.46 -0.42 -3.93 16 5 C 0.06 1.05 7.09 -82.91 -0.59 0.46 16 6 C 0.60 10.91 7.79 -12.39 -0.10 10.81 16 7 O -0.53 -10.86 16.56 5.30 0.09 -10.77 16 8 N -0.69 -12.27 3.59 -54.75 -0.20 -12.47 16 9 C 0.16 2.87 2.21 -67.89 -0.15 2.72 16 10 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 11 C -0.16 -3.19 5.77 -26.61 -0.15 -3.34 16 12 C 0.17 4.22 5.00 -3.71 -0.02 4.20 16 13 N -0.59 -14.61 2.99 -172.31 -0.52 -15.12 16 14 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 15 H 0.06 1.70 7.85 -52.48 -0.41 1.29 16 16 C 0.00 0.10 5.07 -17.43 -0.09 0.01 16 17 N -0.90 -26.29 10.97 55.49 0.61 -25.69 16 18 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.15 3.06 5.50 -3.71 -0.02 3.04 16 23 C -0.12 -2.02 2.67 -90.50 -0.24 -2.26 16 24 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 25 C -0.14 -2.00 9.06 37.16 0.34 -1.66 16 26 N -0.24 -3.82 12.26 33.34 0.41 -3.41 16 27 N -0.39 -4.88 4.04 -68.18 -0.28 -5.16 16 28 C 0.08 0.55 9.60 59.85 0.57 1.12 16 29 H 0.06 0.26 5.79 -51.93 -0.30 -0.04 16 30 H 0.06 0.28 6.66 -51.93 -0.35 -0.06 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.16 2.32 8.06 -52.48 -0.42 1.90 16 33 H 0.41 7.24 6.43 -40.82 -0.26 6.98 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 37 H 0.09 2.47 6.02 -51.93 -0.31 2.15 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.01 0.30 6.64 -51.93 -0.34 -0.05 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.72 7.54 -51.93 -0.39 0.33 16 44 H 0.08 0.40 7.68 -51.93 -0.40 0.00 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.43 4.60 -51.93 -0.24 0.19 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -33.36 364.78 -6.53 -39.89 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.73 Total: 5.25 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.19 Total: 8.47 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.03 Total: -61.85 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.11 Total: -13.97 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.36 -6.53 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.449 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds