Wall clock time and date at job start Tue Mar 31 2020 14:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35766 * 117.00497 * 2 1 4 4 C 1.35583 * 126.08946 * 184.44782 * 3 2 1 5 5 C 1.41058 * 107.80492 * 179.97438 * 4 3 2 6 6 C 1.47714 * 125.98560 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00204 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00355 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00536 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.45888 * 324.99726 * 9 8 6 11 11 C 1.53041 * 109.44732 * 84.96064 * 9 8 6 12 12 C 1.53190 * 109.31263 * 58.65270 * 11 9 8 13 13 N 1.46930 * 108.77515 * 54.63380 * 12 11 9 14 14 C 1.36935 * 120.63061 * 126.41741 * 13 12 11 15 15 H 1.08007 * 119.99500 * 210.60929 * 14 13 12 16 16 C 1.38806 * 120.00366 * 30.60265 * 14 13 12 17 17 N 1.31618 * 120.00012 * 10.22440 * 16 14 13 18 18 Si 1.86801 * 120.00083 * 190.22106 * 16 14 13 19 19 H 1.48502 * 109.46882 * 90.00440 * 18 16 14 20 20 H 1.48498 * 109.47259 * 209.99988 * 18 16 14 21 21 H 1.48496 * 109.47235 * 330.00311 * 18 16 14 22 22 C 1.46926 * 118.73698 * 306.38781 * 13 12 11 23 23 C 1.53039 * 109.46222 * 205.02428 * 9 8 6 24 24 H 1.08997 * 109.49466 * 181.40277 * 23 9 8 25 25 C 1.53003 * 109.49591 * 61.34284 * 23 9 8 26 26 N 1.31866 * 108.03183 * 0.22571 * 5 4 3 27 27 N 1.35844 * 126.08235 * 4.42487 * 3 2 1 28 28 C 1.46505 * 125.94656 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47059 * 306.59996 * 1 2 3 30 30 H 1.09002 * 109.47079 * 66.60005 * 1 2 3 31 31 H 1.08996 * 109.47310 * 186.59737 * 1 2 3 32 32 H 1.08009 * 126.09890 * 359.94683 * 4 3 2 33 33 H 0.97001 * 119.99817 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.49510 * 178.59987 * 11 9 8 35 35 H 1.08998 * 109.49917 * 298.69973 * 11 9 8 36 36 H 1.09000 * 109.59008 * 294.84297 * 12 11 9 37 37 H 1.09000 * 109.59031 * 174.41923 * 12 11 9 38 38 H 0.97003 * 120.00138 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.58999 * 293.82341 * 22 13 12 40 40 H 1.09006 * 109.58773 * 173.39897 * 22 13 12 41 41 H 1.08999 * 109.47294 * 59.99759 * 25 23 9 42 42 H 1.09000 * 109.47162 * 180.02562 * 25 23 9 43 43 H 1.09002 * 109.46631 * 299.99807 * 25 23 9 44 44 H 1.08998 * 109.47382 * 83.11972 * 28 27 3 45 45 H 1.09005 * 109.46858 * 203.12019 * 28 27 3 46 46 H 1.09001 * 109.46975 * 323.11632 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2096 0.0000 4 6 3.3814 1.4252 -0.0850 5 6 3.5964 2.8189 -0.0512 6 6 4.9071 3.4967 -0.1178 7 8 5.9266 2.8410 -0.2103 8 7 4.9730 4.8422 -0.0750 9 6 6.2729 5.5145 -0.1404 10 1 7.0193 4.9131 0.3785 11 6 6.6846 5.6862 -1.6044 12 6 5.6164 6.5026 -2.3387 13 7 5.4084 7.7660 -1.6181 14 6 5.5026 8.9656 -2.2717 15 1 5.8395 9.8443 -1.7417 16 6 5.1653 9.0524 -3.6153 17 7 4.5676 8.0419 -4.2104 18 14 5.5594 10.6033 -4.5791 19 1 6.9110 10.4813 -5.1820 20 1 4.5523 10.7870 -5.6548 21 1 5.5283 11.7744 -3.6666 22 6 5.0968 7.7178 -0.1831 23 6 6.1709 6.8879 0.5271 24 1 7.1312 7.3988 0.4567 25 6 5.7921 6.7133 1.9991 26 7 2.4227 3.4105 0.0556 27 7 1.4335 2.4195 0.0847 28 6 -0.0097 2.6476 0.1917 29 1 -0.3633 0.6127 0.8250 30 1 -0.3633 0.4081 -0.9432 31 1 -0.3634 -1.0208 0.1181 32 1 4.1448 0.6653 -0.1639 33 1 4.1596 5.3655 -0.0008 34 1 7.6400 6.2086 -1.6547 35 1 6.7798 4.7067 -2.0729 36 1 4.6829 5.9406 -2.3678 37 1 5.9509 6.7122 -3.3547 38 1 4.3322 8.1023 -5.1495 39 1 4.1209 7.2549 -0.0364 40 1 5.0885 8.7292 0.2233 41 1 6.5555 6.1205 2.5029 42 1 5.7191 7.6917 2.4740 43 1 4.8313 6.2033 2.0690 44 1 -0.3173 2.5468 1.2325 45 1 -0.2459 3.6515 -0.1614 46 1 -0.5395 1.9145 -0.4165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942432479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:23 Heat of formation + Delta-G solvation = 22.791809 kcal Electronic energy + Delta-G solvation = -28240.224500 eV Core-core repulsion = 24360.703896 eV Total energy + Delta-G solvation = -3879.520604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.72298 -41.12550 -39.45951 -38.85178 -35.99464 -34.55922 -33.93879 -32.86312 -31.92865 -30.93638 -28.99441 -27.49022 -27.37100 -26.79583 -24.68803 -23.52025 -22.68411 -22.51398 -21.21857 -20.07892 -19.34037 -18.64720 -17.71683 -17.56348 -16.90430 -16.79250 -16.37535 -16.24858 -16.15894 -15.63809 -15.53426 -15.29860 -15.11456 -14.73816 -14.64426 -14.57255 -14.24131 -13.93676 -13.89809 -13.50854 -13.14667 -12.92470 -12.68390 -12.53981 -12.39614 -12.36597 -12.31190 -12.16111 -11.91903 -11.79912 -11.66474 -11.47949 -11.26321 -11.07783 -10.53151 -10.28812 -9.97436 -9.54345 -8.60375 -7.82923 -5.34469 0.21619 1.04755 1.10458 1.47943 1.49341 1.57848 1.80710 2.27732 2.34876 2.52341 3.10964 3.32343 3.68793 3.76559 3.86269 4.00813 4.09251 4.14271 4.16908 4.26145 4.29297 4.35985 4.43939 4.52088 4.62893 4.66333 4.69428 4.72009 4.79512 4.83215 4.99040 5.00630 5.05384 5.11601 5.18886 5.23167 5.31974 5.45662 5.51515 5.58483 5.66272 5.78738 6.12750 6.28376 6.43111 6.55437 7.10094 7.17722 7.87686 8.40566 9.21901 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.003389 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.196766 B = 8258.920718 C = 9091.769053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.297 6.297 3 C 0.281 3.719 4 C -0.261 4.261 5 C 0.041 3.959 6 C 0.597 3.403 7 O -0.561 6.561 8 N -0.689 5.689 9 C 0.164 3.836 10 H 0.085 0.915 11 C -0.145 4.145 12 C 0.188 3.812 13 N -0.607 5.607 14 C -0.258 4.258 15 H 0.070 0.930 16 C -0.051 4.051 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.288 1.288 20 H -0.297 1.297 21 H -0.266 1.266 22 C 0.150 3.850 23 C -0.105 4.105 24 H 0.085 0.915 25 C -0.134 4.134 26 N -0.265 5.265 27 N -0.384 5.384 28 C 0.061 3.939 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.163 0.837 33 H 0.408 0.592 34 H 0.068 0.932 35 H 0.048 0.952 36 H -0.006 1.006 37 H 0.052 0.948 38 H 0.247 0.753 39 H 0.015 0.985 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -13.523 12.950 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.203 6.203 3 C 0.113 3.887 4 C -0.292 4.292 5 C -0.125 4.125 6 C 0.381 3.619 7 O -0.438 6.438 8 N -0.339 5.339 9 C 0.060 3.940 10 H 0.103 0.897 11 C -0.185 4.185 12 C 0.063 3.937 13 N -0.330 5.330 14 C -0.389 4.389 15 H 0.087 0.913 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.798 3.202 19 H -0.215 1.215 20 H -0.224 1.224 21 H -0.191 1.191 22 C 0.024 3.976 23 C -0.126 4.126 24 H 0.103 0.897 25 C -0.192 4.192 26 N -0.097 5.097 27 N -0.182 5.182 28 C -0.077 4.077 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.180 0.820 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.012 0.988 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.666 -13.150 12.828 21.243 hybrid contribution -0.129 0.240 -1.182 1.213 sum -10.796 -12.910 11.646 20.465 Atomic orbital electron populations 1.24106 0.75307 1.07595 1.03009 1.86328 1.24399 1.20042 1.89534 1.19434 0.90707 0.79913 0.98687 1.20411 0.93471 0.95106 1.20163 1.21727 0.92640 0.93683 1.04437 1.17098 0.86202 0.82285 0.76287 1.90741 1.35397 1.65895 1.51755 1.45948 1.10928 1.05345 1.71724 1.20920 0.84204 0.93351 0.95535 0.89675 1.22426 1.00268 0.99246 0.96528 1.20413 0.93150 0.84876 0.95308 1.44250 1.81608 1.02147 1.05044 1.19537 1.36779 0.88805 0.93757 0.91251 1.25904 0.98813 1.00277 0.99665 1.70164 1.44444 1.32845 1.10839 0.85239 0.76830 0.79971 0.78208 1.21455 1.22359 1.19067 1.21078 0.94360 0.98289 0.83872 1.21806 1.01141 0.93957 0.95692 0.89715 1.21702 1.01506 1.02426 0.93522 1.77705 0.95555 1.12159 1.24268 1.49412 1.08348 1.02269 1.58165 1.23064 0.72067 1.06933 1.05673 0.89842 0.90654 0.84773 0.81986 0.75534 0.91362 0.93285 0.98840 0.93009 0.94352 0.96689 0.92042 0.91758 0.91104 0.93024 0.87727 0.88241 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.39 113.37 1.06 1.01 16 2 O -0.30 -5.54 10.57 -90.93 -0.96 -6.50 16 3 C 0.28 6.91 7.78 83.46 0.65 7.56 16 4 C -0.26 -7.95 10.59 22.35 0.24 -7.71 16 5 C 0.04 1.40 7.09 42.34 0.30 1.70 16 6 C 0.60 22.33 7.79 86.75 0.68 23.01 16 7 O -0.56 -23.37 16.56 -3.95 -0.07 -23.44 16 8 N -0.69 -24.64 3.59 -445.40 -1.60 -26.24 16 9 C 0.16 5.86 2.21 45.02 0.10 5.96 16 10 H 0.09 2.95 7.58 -2.39 -0.02 2.93 16 11 C -0.14 -6.05 5.77 30.67 0.18 -5.88 16 12 C 0.19 9.51 5.00 86.36 0.43 9.94 16 13 N -0.61 -30.36 2.99 -699.08 -2.09 -32.45 16 14 C -0.26 -14.13 9.59 84.03 0.81 -13.33 16 15 H 0.07 3.65 7.85 -2.91 -0.02 3.63 16 16 C -0.05 -2.90 5.07 84.86 0.43 -2.47 16 17 N -0.94 -56.28 10.97 21.65 0.24 -56.05 16 18 Si 0.97 45.23 29.57 68.60 2.03 47.26 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.15 5.96 5.50 86.36 0.48 6.44 16 23 C -0.11 -3.44 2.67 -10.72 -0.03 -3.47 16 24 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 25 C -0.13 -3.40 9.06 71.98 0.65 -2.75 16 26 N -0.26 -8.28 12.26 -48.43 -0.59 -8.87 16 27 N -0.38 -8.95 4.04 -480.56 -1.94 -10.89 16 28 C 0.06 0.70 9.60 127.77 1.23 1.93 16 29 H 0.08 0.32 5.79 -2.39 -0.01 0.31 16 30 H 0.08 0.39 6.66 -2.39 -0.02 0.38 16 31 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.16 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.41 14.64 6.43 -92.71 -0.60 14.04 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H -0.01 -0.35 7.74 -2.39 -0.02 -0.37 16 37 H 0.05 3.00 6.02 -2.39 -0.01 2.98 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.02 0.61 6.64 -2.39 -0.02 0.60 16 40 H 0.06 2.37 7.93 -2.38 -0.02 2.36 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.05 1.33 7.54 -2.39 -0.02 1.31 16 44 H 0.10 0.69 7.68 -2.39 -0.02 0.67 16 45 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.13 0.67 4.60 -2.39 -0.01 0.66 16 Total: -1.00 -74.67 364.78 2.62 -72.05 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.41 Total: 23.20 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.20 Total: 21.94 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -5.99 Total: -134.51 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.03 Total: -29.94 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -74.67 2.62 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.840 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds