Wall clock time and date at job start Tue Mar 31 2020 14:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35767 * 117.00245 * 2 1 4 4 C 1.35588 * 126.08475 * 182.60260 * 3 2 1 5 5 C 1.41055 * 107.79960 * 179.97438 * 4 3 2 6 6 C 1.47718 * 125.98346 * 179.97438 * 5 4 3 7 7 O 1.21580 * 119.99998 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00361 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00030 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46603 * 325.00833 * 9 8 6 11 11 C 1.53039 * 109.44713 * 84.97456 * 9 8 6 12 12 C 1.53190 * 109.31579 * 181.37785 * 11 9 8 13 13 N 1.46926 * 108.77183 * 305.36338 * 12 11 9 14 14 C 1.36944 * 120.62842 * 233.62708 * 13 12 11 15 15 H 1.08001 * 119.99954 * 33.79833 * 14 13 12 16 16 C 1.38811 * 119.99804 * 213.79230 * 14 13 12 17 17 N 1.31621 * 120.00063 * 14.24786 * 16 14 13 18 18 Si 1.86805 * 120.00089 * 194.23793 * 16 14 13 19 19 H 1.48503 * 109.46397 * 60.00332 * 18 16 14 20 20 H 1.48489 * 109.47180 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47114 * 300.00841 * 18 16 14 22 22 C 1.46927 * 118.74191 * 53.61148 * 13 12 11 23 23 C 1.53045 * 109.46190 * 205.02976 * 9 8 6 24 24 H 1.08994 * 109.49540 * 298.62155 * 23 9 8 25 25 C 1.53002 * 109.49274 * 58.68059 * 23 9 8 26 26 N 1.31862 * 108.03570 * 0.22793 * 5 4 3 27 27 N 1.35841 * 126.08232 * 2.59559 * 3 2 1 28 28 C 1.46498 * 125.94880 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47018 * 69.24642 * 1 2 3 30 30 H 1.09000 * 109.47108 * 189.25032 * 1 2 3 31 31 H 1.09000 * 109.46314 * 309.24480 * 1 2 3 32 32 H 1.08008 * 126.09932 * 359.97438 * 4 3 2 33 33 H 0.96999 * 119.99745 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.49763 * 301.32842 * 11 9 8 35 35 H 1.08998 * 109.50264 * 61.42394 * 11 9 8 36 36 H 1.09003 * 109.58998 * 185.57519 * 12 11 9 37 37 H 1.08997 * 109.59048 * 65.14874 * 12 11 9 38 38 H 0.97001 * 119.99823 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.58726 * 186.60542 * 22 13 12 40 40 H 1.09002 * 109.58797 * 66.17257 * 22 13 12 41 41 H 1.09004 * 109.47134 * 60.00397 * 25 23 9 42 42 H 1.08999 * 109.47153 * 180.02562 * 25 23 9 43 43 H 1.09005 * 109.47284 * 300.00118 * 25 23 9 44 44 H 1.09000 * 109.47084 * 82.74446 * 28 27 3 45 45 H 1.09004 * 109.46943 * 202.73918 * 28 27 3 46 46 H 1.08999 * 109.47191 * 322.73435 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3833 1.4242 -0.0498 5 6 3.5975 2.8183 -0.0303 6 6 4.9098 3.4954 -0.0691 7 8 5.9314 2.8385 -0.1236 8 7 4.9746 4.8414 -0.0451 9 6 6.2761 5.5128 -0.0831 10 1 7.0070 4.9196 0.4664 11 6 6.7301 5.6624 -1.5369 12 6 8.1066 6.3337 -1.5714 13 7 8.0342 7.5993 -0.8287 14 6 8.4333 8.7732 -1.4101 15 1 8.2862 8.9290 -2.4686 16 6 9.0268 9.7630 -0.6387 17 7 9.4614 9.4823 0.5715 18 14 9.2089 11.4935 -1.3185 19 1 7.8669 12.0436 -1.6375 20 1 9.8701 12.3558 -0.3064 21 1 10.0347 11.4563 -2.5521 22 6 7.5251 7.5816 0.5494 23 6 6.1551 6.8963 0.5600 24 1 5.4422 7.4982 -0.0033 25 6 5.6696 6.7477 2.0034 26 7 2.4215 3.4111 0.0343 27 7 1.4316 2.4204 0.0497 28 6 -0.0139 2.6498 0.1134 29 1 -0.3633 0.3641 -0.9610 30 1 -0.3633 -1.0143 0.1652 31 1 -0.3632 0.6502 0.7959 32 1 4.1486 0.6634 -0.0961 33 1 4.1595 5.3655 -0.0020 34 1 6.7935 4.6782 -2.0013 35 1 6.0123 6.2762 -2.0810 36 1 8.3906 6.5322 -2.6049 37 1 8.8442 5.6792 -1.1070 38 1 9.8758 10.1740 1.1106 39 1 7.4253 8.6035 0.9153 40 1 8.2152 7.0288 1.1869 41 1 6.3834 6.1466 2.5667 42 1 5.5831 7.7332 2.4609 43 1 4.6961 6.2574 2.0107 44 1 -0.3513 2.5577 1.1457 45 1 -0.2395 3.6507 -0.2547 46 1 -0.5264 1.9117 -0.5037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942432481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:28 Heat of formation + Delta-G solvation = 42.251690 kcal Electronic energy + Delta-G solvation = -27581.020356 eV Core-core repulsion = 23702.343595 eV Total energy + Delta-G solvation = -3878.676761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.87212 -39.67901 -38.55404 -37.42371 -34.45221 -33.79708 -32.30370 -31.75608 -30.46986 -29.31107 -28.27364 -26.78519 -25.86341 -25.10580 -23.35232 -21.87059 -21.60896 -20.79454 -19.96400 -19.22106 -18.24889 -17.09341 -16.80267 -16.40251 -16.06439 -15.64586 -15.22784 -15.12672 -14.75055 -14.53570 -14.25224 -13.91533 -13.75899 -13.62068 -13.41707 -13.23747 -13.03119 -12.79936 -12.47232 -12.01344 -11.86253 -11.72143 -11.41303 -11.24387 -11.05838 -11.01254 -10.71215 -10.63243 -10.31176 -10.16041 -10.00051 -9.97279 -9.69553 -9.45729 -9.40360 -8.67653 -8.62793 -8.42718 -6.55334 -5.76190 -3.24226 1.20231 1.82328 2.01202 2.50261 3.36833 3.41092 3.45871 3.47102 3.48269 3.90942 4.25687 4.38116 4.51954 4.55517 4.61951 4.72650 4.95603 5.04505 5.19295 5.32563 5.38518 5.51522 5.62184 5.64558 5.68019 5.75834 5.94953 6.15843 6.16194 6.20944 6.31439 6.42415 6.52495 6.57705 6.65485 6.75099 6.87137 6.93954 6.97327 7.06948 7.12616 7.35878 7.62311 7.79465 7.84766 8.37625 8.52351 9.25381 9.86735 10.47687 11.32434 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.002478 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.933565 B =11296.449172 C =11531.396694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.266 3.734 4 C -0.234 4.234 5 C 0.064 3.936 6 C 0.595 3.405 7 O -0.525 6.525 8 N -0.704 5.704 9 C 0.156 3.844 10 H 0.085 0.915 11 C -0.141 4.141 12 C 0.148 3.852 13 N -0.592 5.592 14 C -0.257 4.257 15 H 0.062 0.938 16 C 0.008 3.992 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.185 3.815 23 C -0.122 4.122 24 H 0.068 0.932 25 C -0.140 4.140 26 N -0.250 5.250 27 N -0.395 5.395 28 C 0.078 3.922 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.402 0.598 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.023 0.977 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.173 -15.957 0.931 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.194 6.194 3 C 0.100 3.900 4 C -0.264 4.264 5 C -0.104 4.104 6 C 0.377 3.623 7 O -0.399 6.399 8 N -0.354 5.354 9 C 0.053 3.947 10 H 0.103 0.897 11 C -0.181 4.181 12 C 0.021 3.979 13 N -0.314 5.314 14 C -0.386 4.386 15 H 0.080 0.920 16 C -0.192 4.192 17 N -0.544 5.544 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.208 1.208 22 C 0.058 3.942 23 C -0.143 4.143 24 H 0.086 0.914 25 C -0.198 4.198 26 N -0.081 5.081 27 N -0.192 5.192 28 C -0.063 4.063 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.184 0.816 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.950 -15.500 1.063 26.892 hybrid contribution -0.436 0.435 -0.271 0.673 sum -22.387 -15.065 0.792 26.995 Atomic orbital electron populations 1.23666 0.78057 1.05324 1.01548 1.86311 1.21559 1.21613 1.89926 1.19560 0.91081 0.78896 1.00456 1.20379 0.91969 0.95751 1.18310 1.22039 0.92987 0.93078 1.02267 1.16893 0.85666 0.82435 0.77308 1.90818 1.34061 1.65204 1.49801 1.46195 1.10957 1.05403 1.72808 1.21143 0.83014 0.93244 0.97262 0.89676 1.22412 1.00257 1.00062 0.95404 1.20895 0.92369 0.88191 0.96463 1.44022 1.73127 1.02348 1.11918 1.19079 1.33311 0.92340 0.93906 0.92018 1.25205 0.97299 0.99469 0.97192 1.70003 1.41531 1.32389 1.10440 0.86387 0.77821 0.84531 0.78076 1.20991 1.21654 1.20817 1.20723 0.87510 0.99730 0.86188 1.22173 1.02502 0.94637 0.94976 0.91358 1.21743 0.99971 1.01333 0.96777 1.77730 0.95139 1.10977 1.24279 1.49059 1.06937 1.02990 1.60259 1.22504 0.74749 1.05613 1.03390 0.91897 0.87328 0.91635 0.81647 0.76319 0.92502 0.92264 0.92514 0.96076 0.93546 0.89889 0.95869 0.92932 0.92641 0.93768 0.90345 0.88268 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.42 101.05 0.95 0.99 16 2 O -0.29 -2.58 10.57 -19.01 -0.20 -2.78 16 3 C 0.27 2.96 7.78 -16.72 -0.13 2.83 16 4 C -0.23 -3.13 10.59 -39.46 -0.42 -3.54 16 5 C 0.06 0.93 7.09 -82.91 -0.59 0.34 16 6 C 0.59 9.85 7.79 -12.39 -0.10 9.75 16 7 O -0.52 -10.24 16.56 5.30 0.09 -10.15 16 8 N -0.70 -11.02 4.36 -54.75 -0.24 -11.26 16 9 C 0.16 2.82 1.88 -67.89 -0.13 2.70 16 10 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 11 C -0.14 -2.67 5.65 -26.61 -0.15 -2.82 16 12 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 13 N -0.59 -14.93 2.96 -172.32 -0.51 -15.44 16 14 C -0.26 -7.06 9.53 -15.06 -0.14 -7.20 16 15 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 16 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 17 N -0.90 -26.14 11.46 55.49 0.64 -25.50 16 18 Si 0.90 21.67 29.58 -169.99 -5.03 16.65 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.19 4.35 4.54 -3.71 -0.02 4.34 16 23 C -0.12 -2.27 2.46 -90.50 -0.22 -2.49 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 25 C -0.14 -2.25 9.03 37.16 0.34 -1.92 16 26 N -0.25 -3.26 12.26 33.34 0.41 -2.85 16 27 N -0.40 -4.03 4.03 -68.19 -0.28 -4.30 16 28 C 0.08 0.38 9.57 59.85 0.57 0.96 16 29 H 0.06 0.16 6.69 -51.93 -0.35 -0.18 16 30 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.17 5.66 -51.93 -0.29 -0.12 16 32 H 0.17 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.40 5.64 8.00 -40.82 -0.33 5.31 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.08 2.16 6.42 -51.93 -0.33 1.83 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.63 7.36 -51.93 -0.38 0.24 16 44 H 0.08 0.26 7.60 -51.93 -0.39 -0.13 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.23 4.71 -51.93 -0.24 -0.02 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -33.57 369.35 -6.60 -40.17 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.90 Total: 2.64 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.14 Total: 7.27 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.02 Total: -59.36 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.11 Total: -12.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.57 -6.60 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.420 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds