Wall clock time and date at job start Tue Mar 31 2020 14:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35767 * 117.00245 * 2 1 4 4 C 1.35588 * 126.08475 * 182.60260 * 3 2 1 5 5 C 1.41055 * 107.79960 * 179.97438 * 4 3 2 6 6 C 1.47718 * 125.98346 * 179.97438 * 5 4 3 7 7 O 1.21580 * 119.99998 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00361 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00030 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.46603 * 325.00833 * 9 8 6 11 11 C 1.53039 * 109.44713 * 84.97456 * 9 8 6 12 12 C 1.53190 * 109.31579 * 181.37785 * 11 9 8 13 13 N 1.46926 * 108.77183 * 305.36338 * 12 11 9 14 14 C 1.36944 * 120.62842 * 233.62708 * 13 12 11 15 15 H 1.08001 * 119.99954 * 33.79833 * 14 13 12 16 16 C 1.38811 * 119.99804 * 213.79230 * 14 13 12 17 17 N 1.31621 * 120.00063 * 14.24786 * 16 14 13 18 18 Si 1.86805 * 120.00089 * 194.23793 * 16 14 13 19 19 H 1.48503 * 109.46397 * 60.00332 * 18 16 14 20 20 H 1.48489 * 109.47180 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47114 * 300.00841 * 18 16 14 22 22 C 1.46927 * 118.74191 * 53.61148 * 13 12 11 23 23 C 1.53045 * 109.46190 * 205.02976 * 9 8 6 24 24 H 1.08994 * 109.49540 * 298.62155 * 23 9 8 25 25 C 1.53002 * 109.49274 * 58.68059 * 23 9 8 26 26 N 1.31862 * 108.03570 * 0.22793 * 5 4 3 27 27 N 1.35841 * 126.08232 * 2.59559 * 3 2 1 28 28 C 1.46498 * 125.94880 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47018 * 69.24642 * 1 2 3 30 30 H 1.09000 * 109.47108 * 189.25032 * 1 2 3 31 31 H 1.09000 * 109.46314 * 309.24480 * 1 2 3 32 32 H 1.08008 * 126.09932 * 359.97438 * 4 3 2 33 33 H 0.96999 * 119.99745 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.49763 * 301.32842 * 11 9 8 35 35 H 1.08998 * 109.50264 * 61.42394 * 11 9 8 36 36 H 1.09003 * 109.58998 * 185.57519 * 12 11 9 37 37 H 1.08997 * 109.59048 * 65.14874 * 12 11 9 38 38 H 0.97001 * 119.99823 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.58726 * 186.60542 * 22 13 12 40 40 H 1.09002 * 109.58797 * 66.17257 * 22 13 12 41 41 H 1.09004 * 109.47134 * 60.00397 * 25 23 9 42 42 H 1.08999 * 109.47153 * 180.02562 * 25 23 9 43 43 H 1.09005 * 109.47284 * 300.00118 * 25 23 9 44 44 H 1.09000 * 109.47084 * 82.74446 * 28 27 3 45 45 H 1.09004 * 109.46943 * 202.73918 * 28 27 3 46 46 H 1.08999 * 109.47191 * 322.73435 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3833 1.4242 -0.0498 5 6 3.5975 2.8183 -0.0303 6 6 4.9098 3.4954 -0.0691 7 8 5.9314 2.8385 -0.1236 8 7 4.9746 4.8414 -0.0451 9 6 6.2761 5.5128 -0.0831 10 1 7.0070 4.9196 0.4664 11 6 6.7301 5.6624 -1.5369 12 6 8.1066 6.3337 -1.5714 13 7 8.0342 7.5993 -0.8287 14 6 8.4333 8.7732 -1.4101 15 1 8.2862 8.9290 -2.4686 16 6 9.0268 9.7630 -0.6387 17 7 9.4614 9.4823 0.5715 18 14 9.2089 11.4935 -1.3185 19 1 7.8669 12.0436 -1.6375 20 1 9.8701 12.3558 -0.3064 21 1 10.0347 11.4563 -2.5521 22 6 7.5251 7.5816 0.5494 23 6 6.1551 6.8963 0.5600 24 1 5.4422 7.4982 -0.0033 25 6 5.6696 6.7477 2.0034 26 7 2.4215 3.4111 0.0343 27 7 1.4316 2.4204 0.0497 28 6 -0.0139 2.6498 0.1134 29 1 -0.3633 0.3641 -0.9610 30 1 -0.3633 -1.0143 0.1652 31 1 -0.3632 0.6502 0.7959 32 1 4.1486 0.6634 -0.0961 33 1 4.1595 5.3655 -0.0020 34 1 6.7935 4.6782 -2.0013 35 1 6.0123 6.2762 -2.0810 36 1 8.3906 6.5322 -2.6049 37 1 8.8442 5.6792 -1.1070 38 1 9.8758 10.1740 1.1106 39 1 7.4253 8.6035 0.9153 40 1 8.2152 7.0288 1.1869 41 1 6.3834 6.1466 2.5667 42 1 5.5831 7.7332 2.4609 43 1 4.6961 6.2574 2.0107 44 1 -0.3513 2.5577 1.1457 45 1 -0.2395 3.6507 -0.2547 46 1 -0.5264 1.9117 -0.5037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942432481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:26 Heat of formation + Delta-G solvation = 17.903217 kcal Electronic energy + Delta-G solvation = -27582.076185 eV Core-core repulsion = 23702.343595 eV Total energy + Delta-G solvation = -3879.732590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.72549 -41.00629 -39.44823 -38.89702 -36.15636 -34.56418 -33.93460 -33.47507 -31.58123 -30.80727 -28.99135 -27.55082 -27.47669 -26.65713 -24.74468 -23.26144 -22.53954 -22.44767 -21.32409 -20.63820 -19.27338 -18.64654 -17.71860 -17.52330 -17.29359 -16.74947 -16.35818 -16.18149 -16.15118 -15.59769 -15.50831 -15.37360 -15.05380 -14.68806 -14.60231 -14.58010 -14.22757 -13.96504 -13.90133 -13.52878 -13.18336 -12.89583 -12.86062 -12.54481 -12.46892 -12.40203 -12.30393 -12.04013 -11.86777 -11.81497 -11.74154 -11.60851 -11.34126 -11.10017 -10.54929 -10.29142 -9.99494 -9.54015 -8.60985 -7.86475 -5.38694 0.19796 1.04887 1.08862 1.49255 1.50898 1.58144 1.77896 2.27276 2.27821 2.52443 3.08905 3.29353 3.65091 3.75473 3.85262 4.00074 4.03527 4.17269 4.21121 4.26920 4.30635 4.36018 4.38100 4.53184 4.59077 4.65715 4.70187 4.73398 4.74282 4.86113 4.94187 4.99680 5.01339 5.10326 5.14259 5.23025 5.31493 5.35132 5.47914 5.50032 5.67965 5.71734 6.11207 6.28274 6.43215 6.55776 7.10000 7.16826 7.83927 8.40818 9.20020 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.002478 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.933565 B =11296.449172 C =11531.396694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.282 3.718 4 C -0.264 4.264 5 C 0.045 3.955 6 C 0.598 3.402 7 O -0.561 6.561 8 N -0.692 5.692 9 C 0.168 3.832 10 H 0.064 0.936 11 C -0.127 4.127 12 C 0.146 3.854 13 N -0.609 5.609 14 C -0.269 4.269 15 H 0.064 0.936 16 C -0.044 4.044 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.276 1.276 22 C 0.193 3.807 23 C -0.107 4.107 24 H 0.074 0.926 25 C -0.133 4.133 26 N -0.257 5.257 27 N -0.382 5.382 28 C 0.061 3.939 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.414 0.586 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.009 0.991 38 H 0.251 0.749 39 H 0.055 0.945 40 H -0.004 1.004 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.776 -16.425 0.472 30.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.205 6.205 3 C 0.113 3.887 4 C -0.294 4.294 5 C -0.121 4.121 6 C 0.382 3.618 7 O -0.438 6.438 8 N -0.342 5.342 9 C 0.064 3.936 10 H 0.082 0.918 11 C -0.167 4.167 12 C 0.019 3.981 13 N -0.332 5.332 14 C -0.399 4.399 15 H 0.081 0.919 16 C -0.240 4.240 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.202 1.202 22 C 0.067 3.933 23 C -0.128 4.128 24 H 0.092 0.908 25 C -0.191 4.191 26 N -0.090 5.090 27 N -0.181 5.181 28 C -0.076 4.076 29 H 0.098 0.902 30 H 0.149 0.851 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -25.620 -15.982 0.592 30.201 hybrid contribution 0.541 0.446 -0.136 0.714 sum -25.079 -15.536 0.456 29.504 Atomic orbital electron populations 1.24122 0.75221 1.07495 1.03215 1.86337 1.24490 1.20254 1.89469 1.19417 0.90643 0.79933 0.98673 1.20420 0.93390 0.95338 1.20301 1.21594 0.92421 0.93457 1.04636 1.17148 0.86242 0.82251 0.76190 1.90793 1.35664 1.65921 1.51414 1.45910 1.10280 1.05347 1.72673 1.20786 0.83845 0.92694 0.96315 0.91774 1.22220 0.98366 0.99975 0.96143 1.20967 0.94034 0.87058 0.96001 1.44287 1.73565 1.02873 1.12479 1.19406 1.32971 0.93325 0.94210 0.91855 1.25976 0.97314 1.03165 0.97549 1.70164 1.42603 1.33278 1.11680 0.85333 0.77958 0.79756 0.77297 1.20068 1.21984 1.20190 1.20518 0.89560 0.98191 0.85037 1.21904 0.99454 0.94372 0.97030 0.90789 1.21685 1.00937 1.01837 0.94653 1.77628 0.95116 1.11960 1.24262 1.49412 1.08243 1.02121 1.58307 1.23057 0.71758 1.07188 1.05648 0.90190 0.85124 0.89900 0.82407 0.74963 0.91894 0.91543 0.92290 0.97316 0.93964 0.92666 0.98565 0.93566 0.92198 0.91208 0.88125 0.87541 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.42 113.37 1.07 1.04 16 2 O -0.30 -4.61 10.57 -90.94 -0.96 -5.57 16 3 C 0.28 5.73 7.78 83.46 0.65 6.38 16 4 C -0.26 -7.00 10.59 22.35 0.24 -6.76 16 5 C 0.04 1.28 7.09 42.34 0.30 1.58 16 6 C 0.60 19.82 7.79 86.75 0.68 20.50 16 7 O -0.56 -22.47 16.56 -3.97 -0.07 -22.54 16 8 N -0.69 -21.18 4.36 -445.39 -1.94 -23.13 16 9 C 0.17 6.08 1.88 45.02 0.08 6.16 16 10 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 11 C -0.13 -4.79 5.65 30.67 0.17 -4.62 16 12 C 0.15 6.53 6.52 86.36 0.56 7.09 16 13 N -0.61 -31.46 2.96 -699.09 -2.07 -33.54 16 14 C -0.27 -15.00 9.53 84.03 0.80 -14.20 16 15 H 0.06 3.45 7.87 -2.91 -0.02 3.42 16 16 C -0.04 -2.46 4.94 84.86 0.42 -2.04 16 17 N -0.93 -55.64 11.46 21.65 0.25 -55.39 16 18 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C 0.19 9.39 4.54 86.36 0.39 9.78 16 23 C -0.11 -3.98 2.46 -10.71 -0.03 -4.00 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 C -0.13 -4.18 9.03 71.98 0.65 -3.53 16 26 N -0.26 -6.25 12.26 -48.43 -0.59 -6.84 16 27 N -0.38 -6.76 4.03 -480.58 -1.94 -8.69 16 28 C 0.06 0.36 9.57 127.77 1.22 1.58 16 29 H 0.08 0.06 6.69 -2.39 -0.02 0.04 16 30 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.08 0.06 5.66 -2.39 -0.01 0.04 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.41 10.91 8.00 -92.71 -0.74 10.16 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.05 2.97 6.42 -2.39 -0.02 2.96 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.84 7.36 -2.38 -0.02 1.82 16 44 H 0.10 0.22 7.60 -2.39 -0.02 0.20 16 45 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.12 0.00 4.71 -2.39 -0.01 -0.01 16 Total: -1.00 -75.13 369.35 2.17 -72.96 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.26 Total: 16.81 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 7.21 Total: 18.96 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.30 Total: -127.59 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.03 Total: -28.11 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.13 2.17 -72.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.860 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds