Wall clock time and date at job start Tue Mar 31 2020 14:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35766 * 117.00439 * 2 1 4 4 C 1.35592 * 126.08931 * 177.11797 * 3 2 1 5 5 C 1.41056 * 107.79914 * 180.16129 * 4 3 2 6 6 C 1.47730 * 125.98034 * 179.83342 * 5 4 3 7 7 O 1.21569 * 119.99496 * 359.71544 * 6 5 4 8 8 N 1.34776 * 119.99729 * 179.71682 * 6 5 4 9 9 C 1.46495 * 119.99763 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.45071 * 35.03466 * 9 8 6 11 11 C 1.53046 * 109.46045 * 275.06879 * 9 8 6 12 12 C 1.52757 * 109.38089 * 301.22002 * 11 9 8 13 13 N 1.46923 * 109.00906 * 305.58665 * 12 11 9 14 14 C 1.36939 * 120.63163 * 233.58681 * 13 12 11 15 15 H 1.07998 * 119.99912 * 146.33931 * 14 13 12 16 16 C 1.38810 * 119.99823 * 326.33594 * 14 13 12 17 17 N 1.31617 * 119.99818 * 163.03537 * 16 14 13 18 18 Si 1.86801 * 120.00151 * 343.30477 * 16 14 13 19 19 H 1.48497 * 109.46839 * 90.04471 * 18 16 14 20 20 H 1.48495 * 109.47071 * 210.04394 * 18 16 14 21 21 H 1.48501 * 109.47030 * 330.05025 * 18 16 14 22 22 C 1.46925 * 118.73988 * 53.31081 * 13 12 11 23 23 C 1.53039 * 109.46262 * 154.99799 * 9 8 6 24 24 H 1.08996 * 109.49895 * 178.60528 * 23 9 8 25 25 C 1.52998 * 109.49964 * 298.70613 * 23 9 8 26 26 N 1.31858 * 108.03639 * 359.56919 * 5 4 3 27 27 N 1.35848 * 126.08211 * 356.80606 * 3 2 1 28 28 C 1.46504 * 125.94558 * 359.96072 * 27 3 2 29 29 H 1.08999 * 109.46981 * 53.89045 * 1 2 3 30 30 H 1.09003 * 109.47374 * 173.88587 * 1 2 3 31 31 H 1.08996 * 109.47327 * 293.88753 * 1 2 3 32 32 H 1.08002 * 126.09895 * 359.97438 * 4 3 2 33 33 H 0.96997 * 120.00106 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.49510 * 61.29427 * 11 9 8 35 35 H 1.08997 * 109.49688 * 181.36055 * 11 9 8 36 36 H 1.08999 * 109.50792 * 185.70478 * 12 11 9 37 37 H 1.09003 * 109.43354 * 65.42463 * 12 11 9 38 38 H 0.96996 * 120.00112 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.58616 * 66.43056 * 22 13 12 40 40 H 1.09003 * 109.59071 * 186.71327 * 22 13 12 41 41 H 1.08995 * 109.47282 * 179.83363 * 25 23 9 42 42 H 1.09003 * 109.46729 * 299.83685 * 25 23 9 43 43 H 1.09005 * 109.46849 * 59.83208 * 25 23 9 44 44 H 1.08998 * 109.46844 * 277.52307 * 28 27 3 45 45 H 1.08999 * 109.47157 * 37.52904 * 28 27 3 46 46 H 1.08997 * 109.46736 * 157.52529 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3831 1.4244 0.0551 5 6 3.5971 2.8185 0.0366 6 6 4.9091 3.4958 0.0848 7 8 5.9300 2.8392 0.1517 8 7 4.9741 4.8417 0.0544 9 6 6.2750 5.5134 0.1027 10 1 7.0114 4.9176 -0.4365 11 6 6.7143 5.6698 1.5604 12 6 5.6657 6.4784 2.3220 13 7 5.4388 7.7491 1.6202 14 6 5.5464 8.9418 2.2843 15 1 5.9163 9.8156 1.7684 16 6 5.1801 9.0278 3.6204 17 7 5.5819 10.0478 4.3486 18 14 4.1231 7.6918 4.3869 19 1 4.9970 6.6329 4.9527 20 1 3.2919 8.2781 5.4688 21 1 3.2403 7.1024 3.3484 22 6 5.1002 7.7161 0.1908 23 6 6.1607 6.8937 -0.5482 24 1 7.1221 7.4040 -0.4905 25 6 5.7533 6.7348 -2.0144 26 7 2.4215 3.4111 -0.0369 27 7 1.4320 2.4202 -0.0612 28 6 -0.0129 2.6492 -0.1396 29 1 -0.3633 0.6056 -0.8302 30 1 -0.3634 -1.0218 -0.1095 31 1 -0.3634 0.4161 0.9396 32 1 4.1481 0.6637 0.1072 33 1 4.1594 5.3655 0.0014 34 1 6.8182 4.6853 2.0167 35 1 7.6708 6.1910 1.5982 36 1 6.0229 6.6777 3.3323 37 1 4.7342 5.9140 2.3662 38 1 5.3263 10.1077 5.2823 39 1 4.1218 7.2547 0.0577 40 1 5.0819 8.7319 -0.2040 41 1 5.6692 7.7182 -2.4768 42 1 6.5082 6.1496 -2.5397 43 1 4.7925 6.2231 -2.0711 44 1 -0.3411 2.5477 -1.1740 45 1 -0.5309 1.9169 0.4796 46 1 -0.2414 3.6534 0.2172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942432482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:30 Heat of formation + Delta-G solvation = 23.395910 kcal Electronic energy + Delta-G solvation = -28400.187334 eV Core-core repulsion = 24520.692925 eV Total energy + Delta-G solvation = -3879.494409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74831 -41.23268 -39.55064 -38.94926 -36.09887 -34.58128 -34.00777 -33.40993 -32.14973 -30.99470 -29.01396 -27.78307 -27.47285 -26.79212 -24.67851 -23.45125 -23.06830 -22.53366 -21.26012 -20.28490 -19.37283 -18.75762 -17.75120 -17.65267 -17.19797 -16.87146 -16.44166 -16.30323 -16.25475 -15.90024 -15.48485 -15.28865 -15.21296 -14.97758 -14.81074 -14.66039 -14.23392 -14.06727 -13.91863 -13.83236 -13.45010 -13.17336 -12.91517 -12.79053 -12.42568 -12.32245 -12.28024 -12.12828 -11.93992 -11.83278 -11.67620 -11.50245 -11.34767 -11.19044 -10.73383 -10.31412 -10.03383 -9.56297 -8.82788 -8.18404 -5.55781 0.18489 1.02945 1.07521 1.28427 1.36315 1.46102 1.77549 2.24819 2.29471 2.39687 3.05301 3.08534 3.32792 3.69482 3.81126 3.94005 3.99555 4.08314 4.12966 4.24146 4.24866 4.28127 4.35177 4.43556 4.50015 4.55990 4.60421 4.65311 4.70807 4.75291 4.89340 4.93035 4.96037 4.97774 5.03942 5.15122 5.21201 5.23256 5.30611 5.43153 5.56340 5.90793 6.09482 6.15138 6.26065 6.51053 6.92478 7.05869 7.60479 8.04661 9.01611 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003896 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.434963 B = 7184.245065 C = 8134.200419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.298 6.298 3 C 0.280 3.720 4 C -0.261 4.261 5 C 0.041 3.959 6 C 0.599 3.401 7 O -0.556 6.556 8 N -0.694 5.694 9 C 0.164 3.836 10 H 0.093 0.907 11 C -0.140 4.140 12 C 0.131 3.869 13 N -0.616 5.616 14 C -0.244 4.244 15 H 0.056 0.944 16 C -0.026 4.026 17 N -0.956 5.956 18 Si 0.942 3.058 19 H -0.284 1.284 20 H -0.309 1.309 21 H -0.263 1.263 22 C 0.149 3.851 23 C -0.107 4.107 24 H 0.085 0.915 25 C -0.134 4.134 26 N -0.265 5.265 27 N -0.384 5.384 28 C 0.061 3.939 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.162 0.838 33 H 0.409 0.591 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.125 0.875 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -20.088 -13.920 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.204 6.204 3 C 0.112 3.888 4 C -0.291 4.291 5 C -0.126 4.126 6 C 0.383 3.617 7 O -0.433 6.433 8 N -0.345 5.345 9 C 0.060 3.940 10 H 0.110 0.890 11 C -0.180 4.180 12 C 0.006 3.994 13 N -0.340 5.340 14 C -0.374 4.374 15 H 0.073 0.927 16 C -0.221 4.221 17 N -0.602 5.602 18 Si 0.772 3.228 19 H -0.211 1.211 20 H -0.237 1.237 21 H -0.188 1.188 22 C 0.024 3.976 23 C -0.127 4.127 24 H 0.103 0.897 25 C -0.192 4.192 26 N -0.097 5.097 27 N -0.182 5.182 28 C -0.077 4.077 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.143 0.857 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.674 -19.656 -13.807 27.640 hybrid contribution -0.531 -0.567 1.130 1.371 sum -14.204 -20.223 -12.677 27.775 Atomic orbital electron populations 1.24094 0.75294 1.07556 1.02992 1.86330 1.24397 1.20133 1.89501 1.19467 0.90736 0.79880 0.98697 1.20416 0.93309 0.95175 1.20181 1.21731 0.92630 0.93631 1.04563 1.17064 0.86172 0.82215 0.76205 1.90759 1.35267 1.65791 1.51478 1.45986 1.10798 1.05399 1.72341 1.20925 0.84364 0.93396 0.95334 0.88951 1.22230 0.99720 0.99527 0.96516 1.21120 0.96045 0.86844 0.95424 1.44425 1.81358 1.01145 1.07112 1.18835 1.35616 0.88819 0.94104 0.92664 1.25959 1.00012 0.98374 0.97735 1.69920 1.48426 1.33989 1.07834 0.85959 0.80030 0.79244 0.77609 1.21068 1.23716 1.18774 1.21164 0.94979 0.99091 0.82318 1.21801 1.01146 0.93873 0.95906 0.89715 1.21701 1.01637 1.02509 0.93362 1.77680 0.95466 1.12192 1.24336 1.49410 1.08247 1.02236 1.58299 1.23058 0.71971 1.06954 1.05766 0.89941 0.84883 0.90552 0.81996 0.75367 0.91930 0.90603 0.93792 0.95973 0.92953 0.94998 0.91705 0.91264 0.91674 0.92624 0.87775 0.85740 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.40 113.37 1.07 1.03 16 2 O -0.30 -4.97 10.57 -90.92 -0.96 -5.93 16 3 C 0.28 6.19 7.78 83.46 0.65 6.84 16 4 C -0.26 -7.16 10.59 22.35 0.24 -6.92 16 5 C 0.04 1.23 7.09 42.34 0.30 1.53 16 6 C 0.60 19.91 7.79 86.75 0.68 20.59 16 7 O -0.56 -20.98 16.56 -3.93 -0.07 -21.05 16 8 N -0.69 -21.72 3.60 -445.39 -1.60 -23.32 16 9 C 0.16 5.19 2.21 45.02 0.10 5.29 16 10 H 0.09 2.83 7.58 -2.39 -0.02 2.81 16 11 C -0.14 -5.17 5.75 30.53 0.18 -5.00 16 12 C 0.13 5.78 3.92 86.22 0.34 6.12 16 13 N -0.62 -28.63 2.69 -699.94 -1.88 -30.52 16 14 C -0.24 -13.74 10.00 84.03 0.84 -12.90 16 15 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 16 C -0.03 -1.50 5.26 84.86 0.45 -1.06 16 17 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 18 Si 0.94 48.04 24.38 68.60 1.67 49.71 16 19 H -0.28 -14.13 6.63 99.48 0.66 -13.47 16 20 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 21 H -0.26 -12.92 6.75 99.48 0.67 -12.25 16 22 C 0.15 5.47 5.51 86.36 0.48 5.94 16 23 C -0.11 -3.18 2.67 -10.72 -0.03 -3.21 16 24 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 25 C -0.13 -3.09 9.06 71.98 0.65 -2.44 16 26 N -0.26 -7.34 12.26 -48.42 -0.59 -7.93 16 27 N -0.38 -7.88 4.04 -480.56 -1.94 -9.82 16 28 C 0.06 0.56 9.60 127.77 1.23 1.78 16 29 H 0.08 0.19 5.90 -2.39 -0.01 0.17 16 30 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.08 0.25 6.52 -2.39 -0.02 0.23 16 32 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 33 H 0.41 12.58 6.42 -92.71 -0.60 11.99 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.04 2.17 5.00 -2.39 -0.01 2.16 16 37 H 0.02 0.99 6.62 -2.39 -0.02 0.98 16 38 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.03 1.11 6.64 -2.39 -0.02 1.10 16 40 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.26 7.53 -2.38 -0.02 1.24 16 44 H 0.10 0.48 7.62 -2.39 -0.02 0.46 16 45 H 0.12 0.41 4.64 -2.39 -0.01 0.39 16 46 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.60 359.00 2.41 -74.18 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.33 Total: 17.23 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.15 Total: 17.58 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -5.71 Total: -131.72 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.03 Total: -26.98 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.67 Total: 49.71 kcal Total: -76.60 2.41 -74.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942432482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.579 kcal (2) G-P(sol) polarization free energy of solvation -76.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds