Wall clock time and date at job start Tue Mar 31 2020 14:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35845 * 117.00250 * 2 1 4 4 N 1.30809 * 126.05866 * 0.19884 * 3 2 1 5 5 N 1.39921 * 108.88406 * 180.24008 * 4 3 2 6 6 C 1.46501 * 125.69179 * 179.73746 * 5 4 3 7 7 C 1.34165 * 108.62034 * 359.73386 * 5 4 3 8 8 C 1.38136 * 107.50593 * 0.02562 * 7 5 4 9 9 C 1.47254 * 126.44382 * 179.97438 * 8 7 5 10 10 O 1.21622 * 119.99645 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00123 * 0.02562 * 9 8 7 12 12 C 1.46501 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.45834 * 34.97074 * 12 11 9 14 14 C 1.53036 * 109.45769 * 274.99639 * 12 11 9 15 15 C 1.53187 * 109.31796 * 301.34455 * 14 12 11 16 16 N 1.46929 * 108.77314 * 305.36619 * 15 14 12 17 17 C 1.36938 * 120.63096 * 233.58114 * 16 15 14 18 18 H 1.07996 * 120.00040 * 152.45657 * 17 16 15 19 19 C 1.38815 * 119.99900 * 332.46589 * 17 16 15 20 20 N 1.31625 * 120.00044 * 342.37252 * 19 17 16 21 21 Si 1.86799 * 119.99992 * 162.65255 * 19 17 16 22 22 H 1.48494 * 109.47281 * 59.99509 * 21 19 17 23 23 H 1.48501 * 109.47279 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46851 * 299.99688 * 21 19 17 25 25 C 1.46920 * 118.73799 * 53.86216 * 16 15 14 26 26 C 1.53041 * 109.45913 * 154.93331 * 12 11 9 27 27 H 1.09004 * 109.49307 * 178.64409 * 26 12 11 28 28 C 1.53004 * 109.49597 * 298.70056 * 26 12 11 29 29 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47440 * 299.99798 * 1 2 3 31 31 H 1.09004 * 109.47530 * 59.99731 * 1 2 3 32 32 H 1.09003 * 109.46634 * 270.00045 * 6 5 4 33 33 H 1.09005 * 109.47013 * 29.99760 * 6 5 4 34 34 H 1.08994 * 109.46881 * 149.99779 * 6 5 4 35 35 H 1.08001 * 126.24372 * 179.97438 * 7 5 4 36 36 H 0.97007 * 120.00185 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.49681 * 181.38812 * 14 12 11 38 38 H 1.09007 * 109.52459 * 61.31709 * 14 12 11 39 39 H 1.08998 * 109.58921 * 185.57581 * 15 14 12 40 40 H 1.08999 * 109.70471 * 65.22142 * 15 14 12 41 41 H 0.96995 * 119.99676 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.59297 * 65.92481 * 25 16 15 43 43 H 1.09004 * 109.58520 * 186.35376 * 25 16 15 44 44 H 1.09002 * 109.47122 * 60.00181 * 28 26 12 45 45 H 1.08999 * 109.47382 * 180.02562 * 28 26 12 46 46 H 1.09003 * 109.47321 * 300.00071 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3765 0.0037 5 7 2.4282 3.3800 -0.0033 6 6 2.1704 4.8222 -0.0075 7 6 3.6386 2.8012 -0.0055 8 6 3.4451 1.4335 -0.0005 9 6 4.4955 0.4015 -0.0013 10 8 4.1911 -0.7760 0.0030 11 7 5.7942 0.7618 -0.0067 12 6 6.8392 -0.2650 -0.0080 13 1 6.5059 -1.1215 -0.5939 14 6 7.1199 -0.7085 1.4295 15 6 7.5550 0.5042 2.2582 16 7 8.6954 1.1477 1.5917 17 6 9.8591 1.3846 2.2735 18 1 10.7978 1.4272 1.7411 19 6 9.8323 1.5697 3.6490 20 7 8.6996 1.8636 4.2516 21 14 11.4052 1.4093 4.6438 22 1 12.3965 2.4068 4.1668 23 1 11.1103 1.6524 6.0788 24 1 11.9594 0.0418 4.4766 25 6 8.5612 1.5380 0.1817 26 6 8.1168 0.3087 -0.6253 27 1 8.9019 -0.4472 -0.6046 28 6 7.8436 0.7216 -2.0730 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.1029 5.1761 -1.0362 33 1 1.2322 5.0251 0.5090 34 1 2.9844 5.3381 0.5017 35 1 4.5904 3.3116 -0.0110 36 1 6.0370 1.7009 -0.0105 37 1 7.9146 -1.4546 1.4314 38 1 6.2161 -1.1388 1.8611 39 1 7.8509 0.1782 3.2553 40 1 6.7297 1.2120 2.3351 41 1 8.6810 1.9933 5.2126 42 1 7.8154 2.3276 0.0904 43 1 9.5213 1.8943 -0.1918 44 1 7.0592 1.4782 -2.0932 45 1 8.7538 1.1297 -2.5124 46 1 7.5233 -0.1492 -2.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942555127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:34 Heat of formation + Delta-G solvation = 32.257449 kcal Electronic energy + Delta-G solvation = -28443.146040 eV Core-core repulsion = 24564.035896 eV Total energy + Delta-G solvation = -3879.110144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50804 -39.40192 -38.28456 -37.28263 -34.14744 -33.00039 -32.42066 -31.15562 -30.63297 -29.48817 -27.98532 -26.39845 -25.77593 -25.11436 -22.92831 -21.89465 -21.02021 -20.98804 -20.17901 -18.48066 -17.96911 -16.93814 -16.61896 -16.33504 -15.79313 -15.15213 -15.07489 -14.97533 -14.73870 -14.41181 -13.96970 -13.80140 -13.64325 -13.30690 -12.94703 -12.93424 -12.89602 -12.65148 -12.46247 -12.02094 -11.99941 -11.43237 -11.32020 -11.28198 -11.04357 -10.90071 -10.74898 -10.66107 -10.33927 -10.16579 -10.00389 -9.68074 -9.42930 -9.35513 -9.19570 -8.59403 -8.45066 -8.30491 -6.66482 -5.78378 -3.20922 1.46112 2.08751 2.30427 3.18384 3.38371 3.44850 3.46180 3.74139 3.84692 4.28320 4.49688 4.59474 4.87696 4.96779 5.12497 5.15646 5.16980 5.22727 5.34242 5.37853 5.42112 5.42431 5.54453 5.60483 5.69286 5.73296 6.02100 6.04883 6.13792 6.23424 6.33453 6.45562 6.51371 6.65170 6.71430 6.75052 6.85338 6.94597 7.15785 7.16643 7.42907 7.54747 7.71591 7.80535 8.07805 8.45119 8.79531 9.21453 9.85144 10.41242 11.29237 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.003548 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.745126 B = 7890.286024 C = 8306.644687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.266 6.266 3 C 0.314 3.686 4 N -0.356 5.356 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.125 3.875 8 C -0.285 4.285 9 C 0.592 3.408 10 O -0.541 6.541 11 N -0.711 5.711 12 C 0.164 3.836 13 H 0.073 0.927 14 C -0.154 4.154 15 C 0.175 3.825 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.154 3.846 26 C -0.119 4.119 27 H 0.081 0.919 28 C -0.141 4.141 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.190 0.810 36 H 0.395 0.605 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.012 0.988 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.052 0.948 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.771 4.647 -11.175 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.109 3.891 4 N -0.197 5.197 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.027 4.027 8 C -0.300 4.300 9 C 0.379 3.621 10 O -0.418 6.418 11 N -0.363 5.363 12 C 0.059 3.941 13 H 0.091 0.909 14 C -0.194 4.194 15 C 0.049 3.951 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.027 3.973 26 C -0.140 4.140 27 H 0.099 0.901 28 C -0.199 4.199 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.207 0.793 36 H 0.230 0.770 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.069 4.229 -10.966 18.332 hybrid contribution 1.376 0.250 0.690 1.560 sum -12.693 4.479 -10.276 16.934 Atomic orbital electron populations 1.23005 0.78073 1.03626 1.01804 1.86522 1.21470 1.20487 1.88301 1.20395 0.90160 0.85148 0.93375 1.77257 1.13279 0.94614 1.34501 1.47634 1.03163 1.06421 1.55990 1.22003 1.04626 0.73627 1.03779 1.23118 0.91207 0.92276 0.96139 1.19809 0.91910 0.92680 1.25643 1.17016 0.81611 0.87359 0.76152 1.90768 1.82330 1.18020 1.50724 1.45891 1.04945 1.10339 1.75098 1.20832 0.86034 0.89970 0.97216 0.90915 1.22555 1.00311 1.00873 0.95697 1.20712 0.88455 0.89897 0.96011 1.44081 1.13408 1.67609 1.06281 1.19127 0.85519 1.43623 0.90132 0.91777 1.25007 0.96680 0.99854 0.97912 1.70030 1.25162 1.50070 1.09245 0.86400 0.83158 0.78168 0.79202 1.20966 1.21700 1.21025 1.20973 0.98135 0.92132 0.86083 1.22031 0.96794 1.00923 0.94260 0.90074 1.21758 1.00956 1.00909 0.96253 0.88144 0.92552 0.92660 0.90295 0.88968 0.88660 0.79308 0.76987 0.91956 0.92615 0.89751 0.96345 0.93637 0.97038 0.92602 0.93107 0.92904 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.27 -4.30 9.98 -24.61 -0.25 -4.55 16 3 C 0.31 5.06 7.85 -16.66 -0.13 4.93 16 4 N -0.36 -5.03 11.90 30.79 0.37 -4.67 16 5 N -0.35 -3.93 3.97 -67.59 -0.27 -4.20 16 6 C 0.10 0.61 11.44 59.85 0.68 1.29 16 7 C 0.12 1.48 10.98 -16.57 -0.18 1.29 16 8 C -0.29 -4.50 6.14 -104.95 -0.64 -5.15 16 9 C 0.59 10.71 7.77 -12.60 -0.10 10.61 16 10 O -0.54 -11.68 16.09 -0.10 0.00 -11.69 16 11 N -0.71 -11.70 3.59 -54.90 -0.20 -11.90 16 12 C 0.16 2.89 2.21 -67.89 -0.15 2.74 16 13 H 0.07 1.33 7.57 -51.93 -0.39 0.93 16 14 C -0.15 -3.14 5.77 -26.62 -0.15 -3.30 16 15 C 0.17 4.13 5.05 -3.71 -0.02 4.11 16 16 N -0.59 -14.07 2.99 -172.06 -0.51 -14.59 16 17 C -0.25 -6.76 9.59 -15.06 -0.14 -6.90 16 18 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 19 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 20 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 21 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 C 0.15 2.93 5.53 -3.49 -0.02 2.91 16 26 C -0.12 -1.95 2.69 -90.27 -0.24 -2.19 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 C -0.14 -1.86 9.05 37.16 0.34 -1.52 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.19 1.58 7.46 -52.49 -0.39 1.19 16 36 H 0.39 5.86 5.64 -40.82 -0.23 5.63 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.08 2.29 6.03 -51.93 -0.31 1.97 16 40 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.01 0.21 6.63 -51.93 -0.34 -0.13 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -34.80 372.61 -6.50 -41.30 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.08 Total: 3.06 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 0.23 Total: 10.27 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.01 Total: -60.39 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.25 Total: -16.24 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.80 -6.50 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942555127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.557 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds