Wall clock time and date at job start Tue Mar 31 2020 14:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35845 * 117.00250 * 2 1 4 4 N 1.30809 * 126.05866 * 0.19884 * 3 2 1 5 5 N 1.39921 * 108.88406 * 180.24008 * 4 3 2 6 6 C 1.46501 * 125.69179 * 179.73746 * 5 4 3 7 7 C 1.34165 * 108.62034 * 359.73386 * 5 4 3 8 8 C 1.38136 * 107.50593 * 0.02562 * 7 5 4 9 9 C 1.47254 * 126.44382 * 179.97438 * 8 7 5 10 10 O 1.21622 * 119.99645 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00123 * 0.02562 * 9 8 7 12 12 C 1.46501 * 120.00115 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.45834 * 34.97074 * 12 11 9 14 14 C 1.53036 * 109.45769 * 274.99639 * 12 11 9 15 15 C 1.53187 * 109.31796 * 301.34455 * 14 12 11 16 16 N 1.46929 * 108.77314 * 305.36619 * 15 14 12 17 17 C 1.36938 * 120.63096 * 233.58114 * 16 15 14 18 18 H 1.07996 * 120.00040 * 152.45657 * 17 16 15 19 19 C 1.38815 * 119.99900 * 332.46589 * 17 16 15 20 20 N 1.31625 * 120.00044 * 342.37252 * 19 17 16 21 21 Si 1.86799 * 119.99992 * 162.65255 * 19 17 16 22 22 H 1.48494 * 109.47281 * 59.99509 * 21 19 17 23 23 H 1.48501 * 109.47279 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46851 * 299.99688 * 21 19 17 25 25 C 1.46920 * 118.73799 * 53.86216 * 16 15 14 26 26 C 1.53041 * 109.45913 * 154.93331 * 12 11 9 27 27 H 1.09004 * 109.49307 * 178.64409 * 26 12 11 28 28 C 1.53004 * 109.49597 * 298.70056 * 26 12 11 29 29 H 1.09002 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47440 * 299.99798 * 1 2 3 31 31 H 1.09004 * 109.47530 * 59.99731 * 1 2 3 32 32 H 1.09003 * 109.46634 * 270.00045 * 6 5 4 33 33 H 1.09005 * 109.47013 * 29.99760 * 6 5 4 34 34 H 1.08994 * 109.46881 * 149.99779 * 6 5 4 35 35 H 1.08001 * 126.24372 * 179.97438 * 7 5 4 36 36 H 0.97007 * 120.00185 * 359.97438 * 11 9 8 37 37 H 1.09004 * 109.49681 * 181.38812 * 14 12 11 38 38 H 1.09007 * 109.52459 * 61.31709 * 14 12 11 39 39 H 1.08998 * 109.58921 * 185.57581 * 15 14 12 40 40 H 1.08999 * 109.70471 * 65.22142 * 15 14 12 41 41 H 0.96995 * 119.99676 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.59297 * 65.92481 * 25 16 15 43 43 H 1.09004 * 109.58520 * 186.35376 * 25 16 15 44 44 H 1.09002 * 109.47122 * 60.00181 * 28 26 12 45 45 H 1.08999 * 109.47382 * 180.02562 * 28 26 12 46 46 H 1.09003 * 109.47321 * 300.00071 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3765 0.0037 5 7 2.4282 3.3800 -0.0033 6 6 2.1704 4.8222 -0.0075 7 6 3.6386 2.8012 -0.0055 8 6 3.4451 1.4335 -0.0005 9 6 4.4955 0.4015 -0.0013 10 8 4.1911 -0.7760 0.0030 11 7 5.7942 0.7618 -0.0067 12 6 6.8392 -0.2650 -0.0080 13 1 6.5059 -1.1215 -0.5939 14 6 7.1199 -0.7085 1.4295 15 6 7.5550 0.5042 2.2582 16 7 8.6954 1.1477 1.5917 17 6 9.8591 1.3846 2.2735 18 1 10.7978 1.4272 1.7411 19 6 9.8323 1.5697 3.6490 20 7 8.6996 1.8636 4.2516 21 14 11.4052 1.4093 4.6438 22 1 12.3965 2.4068 4.1668 23 1 11.1103 1.6524 6.0788 24 1 11.9594 0.0418 4.4766 25 6 8.5612 1.5380 0.1817 26 6 8.1168 0.3087 -0.6253 27 1 8.9019 -0.4472 -0.6046 28 6 7.8436 0.7216 -2.0730 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.1029 5.1761 -1.0362 33 1 1.2322 5.0251 0.5090 34 1 2.9844 5.3381 0.5017 35 1 4.5904 3.3116 -0.0110 36 1 6.0370 1.7009 -0.0105 37 1 7.9146 -1.4546 1.4314 38 1 6.2161 -1.1388 1.8611 39 1 7.8509 0.1782 3.2553 40 1 6.7297 1.2120 2.3351 41 1 8.6810 1.9933 5.2126 42 1 7.8154 2.3276 0.0904 43 1 9.5213 1.8943 -0.1918 44 1 7.0592 1.4782 -2.0932 45 1 8.7538 1.1297 -2.5124 46 1 7.5233 -0.1492 -2.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942555127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:33 Heat of formation + Delta-G solvation = 6.880194 kcal Electronic energy + Delta-G solvation = -28444.246480 eV Core-core repulsion = 24564.035896 eV Total energy + Delta-G solvation = -3880.210584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.53080 -40.84398 -39.32694 -38.82294 -35.89545 -34.01946 -33.72382 -32.82876 -32.13537 -30.85551 -28.82314 -27.39860 -27.31635 -26.67835 -24.24424 -23.42653 -22.63845 -21.98336 -21.38690 -20.00546 -19.16973 -18.50092 -18.00777 -17.34146 -16.91827 -16.75451 -16.30712 -16.05332 -15.94459 -15.80354 -15.60445 -15.29562 -15.03014 -14.69778 -14.46344 -14.16394 -13.96867 -13.50989 -13.47898 -13.43913 -13.10215 -12.90520 -12.85156 -12.63220 -12.47642 -12.30232 -12.19109 -12.15210 -11.94619 -11.90058 -11.60174 -11.40342 -11.05044 -10.83850 -10.47047 -10.23604 -9.92154 -9.46971 -8.61159 -7.82173 -5.26192 0.48225 1.13362 1.26468 1.49113 1.52650 1.57963 2.19162 2.47211 2.54050 2.56175 3.32724 3.40026 3.73116 3.77353 3.87538 4.15884 4.19833 4.24843 4.29412 4.32839 4.35289 4.48400 4.49640 4.55667 4.61816 4.68093 4.72791 4.74201 4.77032 4.84998 4.91043 5.06636 5.10032 5.17971 5.26987 5.37759 5.49559 5.58650 5.67655 5.72121 5.80365 5.84781 6.15821 6.43378 6.49716 6.77764 7.19613 7.44967 7.92114 8.43193 9.22978 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.003548 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.745126 B = 7890.286024 C = 8306.644687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.294 3.706 4 N -0.366 5.366 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.150 3.850 8 C -0.328 4.328 9 C 0.592 3.408 10 O -0.586 6.586 11 N -0.700 5.700 12 C 0.170 3.830 13 H 0.071 0.929 14 C -0.144 4.144 15 C 0.190 3.810 16 N -0.606 5.606 17 C -0.259 4.259 18 H 0.069 0.931 19 C -0.047 4.047 20 N -0.931 5.931 21 Si 0.960 3.040 22 H -0.273 1.273 23 H -0.298 1.298 24 H -0.283 1.283 25 C 0.151 3.849 26 C -0.106 4.106 27 H 0.075 0.925 28 C -0.133 4.133 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.227 0.773 36 H 0.404 0.596 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.005 0.995 41 H 0.247 0.753 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 6.641 -12.947 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.201 6.201 3 C 0.089 3.911 4 N -0.207 5.207 5 N -0.120 5.120 6 C -0.051 4.051 7 C -0.005 4.005 8 C -0.344 4.344 9 C 0.381 3.619 10 O -0.467 6.467 11 N -0.352 5.352 12 C 0.065 3.935 13 H 0.089 0.911 14 C -0.184 4.184 15 C 0.064 3.936 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.087 0.913 19 C -0.243 4.243 20 N -0.577 5.577 21 Si 0.788 3.212 22 H -0.199 1.199 23 H -0.225 1.225 24 H -0.210 1.210 25 C 0.026 3.974 26 C -0.127 4.127 27 H 0.093 0.907 28 C -0.190 4.190 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.244 0.756 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.695 6.274 -12.780 19.755 hybrid contribution 1.190 -0.281 1.216 1.725 sum -12.504 5.993 -11.564 18.056 Atomic orbital electron populations 1.23231 0.75999 1.05206 1.02297 1.86459 1.23797 1.21398 1.88427 1.20659 0.90611 0.85547 0.94261 1.77214 1.14247 0.94618 1.34635 1.48150 1.02549 1.07719 1.53612 1.22511 1.06133 0.70625 1.05829 1.23552 0.92636 0.90956 0.93372 1.19788 0.91314 0.93912 1.29340 1.17368 0.82225 0.87303 0.75041 1.90731 1.83000 1.20034 1.52971 1.45723 1.04315 1.10492 1.74643 1.20691 0.87156 0.90574 0.95045 0.91138 1.22397 0.99364 0.99363 0.97280 1.20366 0.87996 0.90507 0.94725 1.44258 1.12608 1.68035 1.08021 1.19469 0.86698 1.42198 0.90608 0.91349 1.25684 0.99174 1.00464 0.98981 1.70172 1.26961 1.51779 1.08833 0.85460 0.80233 0.78109 0.77350 1.19856 1.22474 1.20969 1.21178 0.99104 0.93660 0.83502 1.21881 0.95461 0.99383 0.95934 0.90701 1.21691 1.02239 1.01584 0.93533 0.86109 0.92295 0.91814 0.88002 0.88424 0.85892 0.75625 0.75847 0.92273 0.94015 0.93780 0.97742 0.94390 0.95219 0.92123 0.91988 0.91184 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.70 113.37 1.21 1.82 16 2 O -0.30 -9.92 9.98 -86.69 -0.87 -10.79 16 3 C 0.29 9.50 7.85 85.70 0.67 10.17 16 4 N -0.37 -9.97 11.90 -170.00 -2.02 -11.99 16 5 N -0.34 -6.75 3.97 -367.77 -1.46 -8.22 16 6 C 0.09 0.74 11.44 127.77 1.46 2.20 16 7 C 0.15 3.17 10.98 84.31 0.93 4.09 16 8 C -0.33 -10.20 6.14 -20.07 -0.12 -10.32 16 9 C 0.59 21.48 7.77 86.61 0.67 22.16 16 10 O -0.59 -26.11 16.09 1.02 0.02 -26.10 16 11 N -0.70 -22.36 3.59 -445.86 -1.60 -23.96 16 12 C 0.17 5.90 2.21 45.02 0.10 6.00 16 13 H 0.07 2.54 7.57 -2.39 -0.02 2.52 16 14 C -0.14 -5.98 5.77 30.67 0.18 -5.80 16 15 C 0.19 9.16 5.05 86.36 0.44 9.59 16 16 N -0.61 -28.58 2.99 -698.28 -2.09 -30.66 16 17 C -0.26 -13.68 9.59 84.03 0.81 -12.87 16 18 H 0.07 3.49 7.89 -2.91 -0.02 3.46 16 19 C -0.05 -2.59 4.90 84.86 0.42 -2.17 16 20 N -0.93 -54.05 11.19 21.65 0.24 -53.81 16 21 Si 0.96 44.21 29.59 68.60 2.03 46.24 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 C 0.15 5.42 5.53 86.51 0.48 5.90 16 26 C -0.11 -3.25 2.69 -10.57 -0.03 -3.28 16 27 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 28 C -0.13 -3.05 9.05 71.98 0.65 -2.39 16 29 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.23 2.85 7.46 -2.91 -0.02 2.83 16 36 H 0.40 11.13 5.64 -92.70 -0.52 10.61 16 37 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.04 2.48 6.03 -2.39 -0.01 2.46 16 40 H 0.00 0.23 7.74 -2.39 -0.02 0.21 16 41 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.03 0.98 6.63 -2.39 -0.02 0.97 16 43 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 44 H 0.06 1.30 7.54 -2.39 -0.02 1.28 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -78.37 372.61 2.57 -75.80 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.47 Total: 18.41 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 7.86 Total: 25.08 kcal Atomic # 7 Polarization: -121.71 SS G_CDS: -6.93 Total: -128.64 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.85 Total: -36.89 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -78.37 2.57 -75.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942555127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.679 kcal (2) G-P(sol) polarization free energy of solvation -78.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds