Wall clock time and date at job start Tue Mar 31 2020 14:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35849 * 116.99817 * 2 1 4 4 N 1.30805 * 126.06415 * 359.97438 * 3 2 1 5 5 N 1.39919 * 108.88351 * 180.02562 * 4 3 2 6 6 C 1.46500 * 125.68807 * 180.02562 * 5 4 3 7 7 C 1.34160 * 108.62126 * 359.75648 * 5 4 3 8 8 C 1.38124 * 107.50917 * 0.37571 * 7 5 4 9 9 C 1.47254 * 126.44739 * 179.89111 * 8 7 5 10 10 O 1.21620 * 119.99927 * 179.68861 * 9 8 7 11 11 N 1.34774 * 120.00088 * 359.68990 * 9 8 7 12 12 C 1.46494 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.44898 * 325.03642 * 12 11 9 14 14 C 1.53035 * 109.46287 * 85.00103 * 12 11 9 15 15 C 1.53193 * 109.31762 * 181.38568 * 14 12 11 16 16 N 1.46927 * 108.77501 * 305.36514 * 15 14 12 17 17 C 1.36931 * 120.63063 * 233.58667 * 16 15 14 18 18 H 1.08000 * 120.00194 * 27.69394 * 17 16 15 19 19 C 1.38812 * 119.99661 * 207.69852 * 17 16 15 20 20 N 1.31617 * 120.00378 * 17.35460 * 19 17 16 21 21 Si 1.86807 * 119.99569 * 197.35510 * 19 17 16 22 22 H 1.48494 * 109.47225 * 90.00113 * 21 19 17 23 23 H 1.48501 * 109.46797 * 209.99979 * 21 19 17 24 24 H 1.48497 * 109.47032 * 329.99739 * 21 19 17 25 25 C 1.46928 * 118.73677 * 53.60349 * 16 15 14 26 26 C 1.53042 * 109.46177 * 205.07252 * 12 11 9 27 27 H 1.09006 * 109.49368 * 298.59431 * 26 12 11 28 28 C 1.52995 * 109.49956 * 58.66000 * 26 12 11 29 29 H 1.09001 * 109.47119 * 59.99465 * 1 2 3 30 30 H 1.08994 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46870 * 299.99719 * 1 2 3 32 32 H 1.08999 * 109.47479 * 89.96618 * 6 5 4 33 33 H 1.09000 * 109.47250 * 209.97422 * 6 5 4 34 34 H 1.09004 * 109.46723 * 329.96620 * 6 5 4 35 35 H 1.07998 * 126.24257 * 180.26540 * 7 5 4 36 36 H 0.97001 * 119.99957 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.49759 * 301.33808 * 14 12 11 38 38 H 1.08998 * 109.49794 * 61.43144 * 14 12 11 39 39 H 1.09000 * 109.58607 * 65.14963 * 15 14 12 40 40 H 1.08992 * 109.58762 * 185.57523 * 15 14 12 41 41 H 0.96999 * 120.00020 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.58316 * 186.60053 * 25 16 15 43 43 H 1.09010 * 109.58472 * 66.17995 * 25 16 15 44 44 H 1.08999 * 109.47434 * 60.00672 * 28 26 12 45 45 H 1.09001 * 109.46844 * 180.02562 * 28 26 12 46 46 H 1.09001 * 109.47425 * 299.99834 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 -0.0009 6 6 2.1705 4.8222 -0.0009 7 6 3.6385 2.8012 0.0048 8 6 3.4452 1.4336 0.0001 9 6 4.4956 0.4016 0.0014 10 8 4.1911 -0.7759 0.0026 11 7 5.7943 0.7618 0.0013 12 6 6.8393 -0.2648 0.0032 13 1 6.5076 -1.1192 0.5933 14 6 7.1153 -0.7140 -1.4335 15 6 8.1836 -1.8119 -1.4248 16 7 9.3671 -1.3145 -0.7101 17 6 10.6038 -1.3532 -1.2968 18 1 10.6928 -1.3118 -2.3723 19 6 11.7430 -1.4456 -0.5091 20 7 11.6466 -1.8349 0.7444 21 14 13.4130 -1.0172 -1.2284 22 1 13.6866 0.4271 -1.0185 23 1 14.4632 -1.8229 -0.5552 24 1 13.4167 -1.3155 -2.6831 25 6 9.1985 -0.7752 0.6461 26 6 8.1188 0.3111 0.6142 27 1 8.4643 1.1504 0.0106 28 6 7.8337 0.7898 2.0391 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1063 5.1799 1.0267 33 1 2.9827 5.3364 -0.5147 34 1 1.2305 5.0232 -0.5150 35 1 4.5903 3.3116 0.0100 36 1 6.0371 1.7010 0.0008 37 1 6.1980 -1.1025 -1.8759 38 1 7.4706 0.1346 -2.0181 39 1 7.7954 -2.6955 -0.9180 40 1 8.4553 -2.0656 -2.4493 41 1 12.4427 -1.8991 1.2949 42 1 10.1398 -0.3449 0.9879 43 1 8.8929 -1.5743 1.3218 44 1 7.4893 -0.0500 2.6426 45 1 8.7452 1.2003 2.4736 46 1 7.0634 1.5608 2.0161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942555128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:37 Heat of formation + Delta-G solvation = 30.038096 kcal Electronic energy + Delta-G solvation = -27831.571670 eV Core-core repulsion = 23952.365288 eV Total energy + Delta-G solvation = -3879.206382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.67168 -39.31642 -38.41402 -37.34100 -34.37010 -33.16516 -32.31297 -31.77884 -30.64277 -29.11752 -28.11141 -26.53194 -25.86232 -24.94742 -23.02735 -21.85420 -21.10449 -20.77462 -19.98506 -19.32468 -18.00413 -17.04898 -16.58978 -16.48026 -15.90050 -15.53143 -15.22303 -15.14135 -14.75107 -14.38817 -13.99788 -13.74788 -13.55738 -13.28168 -13.10554 -12.98855 -12.85443 -12.76821 -12.44168 -12.10624 -11.97660 -11.41503 -11.40427 -11.25011 -11.07264 -11.00355 -10.71553 -10.59011 -10.27223 -10.10610 -9.94160 -9.78933 -9.58153 -9.36685 -9.33957 -8.73572 -8.51054 -8.37117 -6.64486 -5.75926 -3.17555 1.27637 1.92063 2.15342 3.05061 3.39163 3.46410 3.47824 3.60126 3.67225 4.10710 4.37582 4.52126 4.70443 4.80113 4.96704 5.02460 5.07361 5.17438 5.28208 5.32734 5.35822 5.48809 5.51713 5.58116 5.68170 5.75364 5.97553 6.16199 6.21872 6.33555 6.43418 6.48641 6.54857 6.61500 6.69150 6.76917 6.87178 7.01853 7.07335 7.08233 7.38970 7.39937 7.67419 7.82440 7.93320 8.48119 8.65469 9.24516 9.87965 10.45238 11.32716 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.002799 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.754201 B =10002.122250 C =10522.083396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.265 6.265 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.351 5.351 6 C 0.101 3.899 7 C 0.120 3.880 8 C -0.285 4.285 9 C 0.589 3.411 10 O -0.532 6.532 11 N -0.722 5.722 12 C 0.160 3.840 13 H 0.082 0.918 14 C -0.140 4.140 15 C 0.147 3.853 16 N -0.594 5.594 17 C -0.250 4.250 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.181 3.819 26 C -0.122 4.122 27 H 0.066 0.934 28 C -0.138 4.138 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.389 0.611 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.055 0.945 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.020 0.980 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.405 14.991 0.306 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.167 6.167 3 C 0.110 3.890 4 N -0.195 5.195 5 N -0.133 5.133 6 C -0.040 4.040 7 C -0.032 4.032 8 C -0.300 4.300 9 C 0.375 3.625 10 O -0.409 6.409 11 N -0.372 5.372 12 C 0.056 3.944 13 H 0.100 0.900 14 C -0.180 4.180 15 C 0.020 3.980 16 N -0.316 5.316 17 C -0.380 4.380 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.055 3.945 26 C -0.143 4.143 27 H 0.085 0.915 28 C -0.196 4.196 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.206 0.794 36 H 0.223 0.777 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.549 14.452 0.407 25.125 hybrid contribution 1.472 0.566 -0.293 1.604 sum -19.077 15.018 0.114 24.279 Atomic orbital electron populations 1.23024 0.77898 1.03797 1.01812 1.86540 1.21613 1.20368 1.88177 1.20431 0.90198 0.85197 0.93205 1.77293 1.13171 0.94624 1.34453 1.47651 1.03187 1.06451 1.55961 1.21998 1.04531 0.73590 1.03908 1.23064 0.91190 0.92220 0.96757 1.19869 0.92005 0.92686 1.25487 1.17068 0.81613 0.87440 0.76384 1.90807 1.82182 1.17977 1.49945 1.46087 1.05357 1.10054 1.75690 1.21015 0.85919 0.90333 0.97091 0.89989 1.22385 0.99310 1.00417 0.95892 1.20885 0.87441 0.93128 0.96525 1.44111 1.02953 1.69850 1.14667 1.19207 0.82685 1.44621 0.91486 0.91635 1.25035 0.97970 1.00089 0.96621 1.70033 1.28170 1.49027 1.07478 0.86296 0.84073 0.77964 0.78486 1.21530 1.21818 1.20475 1.20801 0.95975 0.91629 0.86143 1.22156 0.95918 1.01018 0.95164 0.91537 1.21720 1.00477 1.00406 0.97021 0.92563 0.88001 0.92564 0.90214 0.88800 0.88922 0.79361 0.77742 0.92568 0.92442 0.96140 0.92647 0.93651 0.89060 0.96147 0.92976 0.92742 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 101.05 1.08 1.38 16 2 O -0.27 -3.99 9.98 -24.62 -0.25 -4.24 16 3 C 0.31 4.57 7.85 -16.66 -0.13 4.44 16 4 N -0.36 -4.41 11.90 30.79 0.37 -4.04 16 5 N -0.35 -3.16 3.97 -67.60 -0.27 -3.43 16 6 C 0.10 0.39 11.44 59.85 0.68 1.07 16 7 C 0.12 1.09 10.98 -16.58 -0.18 0.91 16 8 C -0.28 -3.91 6.14 -104.95 -0.64 -4.56 16 9 C 0.59 9.71 7.77 -12.60 -0.10 9.61 16 10 O -0.53 -11.11 16.09 -0.10 0.00 -11.11 16 11 N -0.72 -10.48 4.35 -54.90 -0.24 -10.72 16 12 C 0.16 2.84 1.88 -67.89 -0.13 2.72 16 13 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 14 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 15 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 16 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 18 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 21 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 25 C 0.18 4.23 4.59 -3.71 -0.02 4.22 16 26 C -0.12 -2.20 2.46 -90.50 -0.22 -2.42 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 C -0.14 -2.13 9.03 37.16 0.34 -1.79 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.19 0.89 7.46 -52.49 -0.39 0.50 16 36 H 0.39 4.33 7.23 -40.82 -0.30 4.03 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 43 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.54 7.36 -51.93 -0.38 0.16 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -36.03 376.51 -6.60 -42.63 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.23 Total: 0.59 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 0.27 Total: 8.96 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.04 Total: -59.02 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.25 Total: -15.35 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.03 -6.60 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942555128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.663 kcal (2) G-P(sol) polarization free energy of solvation -36.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds