Wall clock time and date at job start Tue Mar 31 2020 14:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35849 * 116.99817 * 2 1 4 4 N 1.30805 * 126.06415 * 359.97438 * 3 2 1 5 5 N 1.39919 * 108.88351 * 180.02562 * 4 3 2 6 6 C 1.46500 * 125.68807 * 180.02562 * 5 4 3 7 7 C 1.34160 * 108.62126 * 359.75648 * 5 4 3 8 8 C 1.38124 * 107.50917 * 0.37571 * 7 5 4 9 9 C 1.47254 * 126.44739 * 179.89111 * 8 7 5 10 10 O 1.21620 * 119.99927 * 179.68861 * 9 8 7 11 11 N 1.34774 * 120.00088 * 359.68990 * 9 8 7 12 12 C 1.46494 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.09004 * 109.44898 * 325.03642 * 12 11 9 14 14 C 1.53035 * 109.46287 * 85.00103 * 12 11 9 15 15 C 1.53193 * 109.31762 * 181.38568 * 14 12 11 16 16 N 1.46927 * 108.77501 * 305.36514 * 15 14 12 17 17 C 1.36931 * 120.63063 * 233.58667 * 16 15 14 18 18 H 1.08000 * 120.00194 * 27.69394 * 17 16 15 19 19 C 1.38812 * 119.99661 * 207.69852 * 17 16 15 20 20 N 1.31617 * 120.00378 * 17.35460 * 19 17 16 21 21 Si 1.86807 * 119.99569 * 197.35510 * 19 17 16 22 22 H 1.48494 * 109.47225 * 90.00113 * 21 19 17 23 23 H 1.48501 * 109.46797 * 209.99979 * 21 19 17 24 24 H 1.48497 * 109.47032 * 329.99739 * 21 19 17 25 25 C 1.46928 * 118.73677 * 53.60349 * 16 15 14 26 26 C 1.53042 * 109.46177 * 205.07252 * 12 11 9 27 27 H 1.09006 * 109.49368 * 298.59431 * 26 12 11 28 28 C 1.52995 * 109.49956 * 58.66000 * 26 12 11 29 29 H 1.09001 * 109.47119 * 59.99465 * 1 2 3 30 30 H 1.08994 * 109.47210 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46870 * 299.99719 * 1 2 3 32 32 H 1.08999 * 109.47479 * 89.96618 * 6 5 4 33 33 H 1.09000 * 109.47250 * 209.97422 * 6 5 4 34 34 H 1.09004 * 109.46723 * 329.96620 * 6 5 4 35 35 H 1.07998 * 126.24257 * 180.26540 * 7 5 4 36 36 H 0.97001 * 119.99957 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.49759 * 301.33808 * 14 12 11 38 38 H 1.08998 * 109.49794 * 61.43144 * 14 12 11 39 39 H 1.09000 * 109.58607 * 65.14963 * 15 14 12 40 40 H 1.08992 * 109.58762 * 185.57523 * 15 14 12 41 41 H 0.96999 * 120.00020 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.58316 * 186.60053 * 25 16 15 43 43 H 1.09010 * 109.58472 * 66.17995 * 25 16 15 44 44 H 1.08999 * 109.47434 * 60.00672 * 28 26 12 45 45 H 1.09001 * 109.46844 * 180.02562 * 28 26 12 46 46 H 1.09001 * 109.47425 * 299.99834 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 7 1.4531 2.3766 -0.0005 5 7 2.4282 3.3800 -0.0009 6 6 2.1705 4.8222 -0.0009 7 6 3.6385 2.8012 0.0048 8 6 3.4452 1.4336 0.0001 9 6 4.4956 0.4016 0.0014 10 8 4.1911 -0.7759 0.0026 11 7 5.7943 0.7618 0.0013 12 6 6.8393 -0.2648 0.0032 13 1 6.5076 -1.1192 0.5933 14 6 7.1153 -0.7140 -1.4335 15 6 8.1836 -1.8119 -1.4248 16 7 9.3671 -1.3145 -0.7101 17 6 10.6038 -1.3532 -1.2968 18 1 10.6928 -1.3118 -2.3723 19 6 11.7430 -1.4456 -0.5091 20 7 11.6466 -1.8349 0.7444 21 14 13.4130 -1.0172 -1.2284 22 1 13.6866 0.4271 -1.0185 23 1 14.4632 -1.8229 -0.5552 24 1 13.4167 -1.3155 -2.6831 25 6 9.1985 -0.7752 0.6461 26 6 8.1188 0.3111 0.6142 27 1 8.4643 1.1504 0.0106 28 6 7.8337 0.7898 2.0391 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1063 5.1799 1.0267 33 1 2.9827 5.3364 -0.5147 34 1 1.2305 5.0232 -0.5150 35 1 4.5903 3.3116 0.0100 36 1 6.0371 1.7010 0.0008 37 1 6.1980 -1.1025 -1.8759 38 1 7.4706 0.1346 -2.0181 39 1 7.7954 -2.6955 -0.9180 40 1 8.4553 -2.0656 -2.4493 41 1 12.4427 -1.8991 1.2949 42 1 10.1398 -0.3449 0.9879 43 1 8.8929 -1.5743 1.3218 44 1 7.4893 -0.0500 2.6426 45 1 8.7452 1.2003 2.4736 46 1 7.0634 1.5608 2.0161 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942555128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:36 Heat of formation + Delta-G solvation = 2.510743 kcal Electronic energy + Delta-G solvation = -27832.765345 eV Core-core repulsion = 23952.365288 eV Total energy + Delta-G solvation = -3880.400058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.51795 -40.69432 -39.32648 -38.91719 -36.05163 -34.05991 -33.72197 -33.44507 -31.84620 -30.65397 -28.81874 -27.51043 -27.40338 -26.53742 -24.38330 -23.14934 -22.47059 -21.91746 -21.24784 -20.79750 -19.16043 -18.56701 -17.88675 -17.33301 -17.12964 -16.75603 -16.48109 -15.99646 -15.94226 -15.67113 -15.52702 -15.40007 -14.96202 -14.62680 -14.53254 -14.18671 -13.92809 -13.53689 -13.46770 -13.41167 -13.14720 -12.89926 -12.85034 -12.81226 -12.53730 -12.38573 -12.14981 -11.98843 -11.92170 -11.79857 -11.68500 -11.50179 -11.20964 -10.81668 -10.52823 -10.23016 -9.93320 -9.46649 -8.68442 -7.84595 -5.30360 0.50974 1.13597 1.28566 1.51004 1.51219 1.60935 2.17916 2.46316 2.51231 2.54333 3.30037 3.40939 3.67476 3.78997 3.86217 4.09638 4.23598 4.27399 4.30347 4.32146 4.35959 4.40838 4.51672 4.55359 4.62437 4.62887 4.73639 4.77352 4.79789 4.80771 4.91229 4.99650 5.07748 5.13708 5.23242 5.35075 5.40086 5.54976 5.65591 5.69795 5.78309 5.88059 6.16764 6.41477 6.50912 6.80261 7.17152 7.46821 7.86627 8.40198 9.22175 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023236 B = 0.002799 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.754201 B =10002.122250 C =10522.083396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.291 3.709 4 N -0.371 5.371 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.156 3.844 8 C -0.329 4.329 9 C 0.590 3.410 10 O -0.588 6.588 11 N -0.703 5.703 12 C 0.172 3.828 13 H 0.050 0.950 14 C -0.125 4.125 15 C 0.144 3.856 16 N -0.609 5.609 17 C -0.263 4.263 18 H 0.068 0.932 19 C -0.050 4.050 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.188 3.812 26 C -0.105 4.105 27 H 0.080 0.920 28 C -0.132 4.132 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.241 0.759 36 H 0.412 0.588 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.002 0.998 40 H 0.057 0.943 41 H 0.250 0.750 42 H 0.064 0.936 43 H -0.013 1.013 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 18.995 -0.359 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.086 3.914 4 N -0.211 5.211 5 N -0.120 5.120 6 C -0.051 4.051 7 C 0.001 3.999 8 C -0.345 4.345 9 C 0.379 3.621 10 O -0.469 6.469 11 N -0.354 5.354 12 C 0.067 3.933 13 H 0.068 0.932 14 C -0.165 4.165 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.207 1.207 23 H -0.225 1.225 24 H -0.195 1.195 25 C 0.062 3.938 26 C -0.126 4.126 27 H 0.099 0.901 28 C -0.190 4.190 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.257 0.743 36 H 0.249 0.751 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.020 0.980 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.005 0.995 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.892 18.536 -0.270 27.931 hybrid contribution 1.473 -0.635 -0.090 1.607 sum -19.419 17.901 -0.360 26.414 Atomic orbital electron populations 1.23213 0.76049 1.05104 1.02311 1.86470 1.23772 1.21723 1.88396 1.20748 0.90875 0.85463 0.94268 1.77250 1.14471 0.94685 1.34720 1.48176 1.02701 1.07681 1.53488 1.22519 1.06312 0.70557 1.05694 1.23680 0.92849 0.90473 0.92906 1.19747 0.90886 0.94044 1.29781 1.17459 0.82263 0.87328 0.75012 1.90777 1.82998 1.20556 1.52595 1.45686 1.04088 1.10405 1.75237 1.20594 0.86557 0.90362 0.95771 0.93214 1.22183 0.97882 0.99571 0.96848 1.20958 0.87491 0.93760 0.95986 1.44383 1.03207 1.70468 1.15188 1.19531 0.83800 1.44152 0.91804 0.91470 1.25811 1.01387 1.00280 0.97016 1.70200 1.28812 1.50329 1.08779 0.85238 0.79385 0.77677 0.77953 1.20661 1.22452 1.19545 1.20623 0.96411 0.91991 0.84807 1.21884 0.94025 0.99231 0.97434 0.90127 1.21681 1.01840 1.00868 0.94617 0.91998 0.86388 0.92005 0.88482 0.85127 0.88664 0.74270 0.75128 0.92676 0.91045 0.97976 0.92444 0.94050 0.91733 0.99451 0.94388 0.92338 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.70 113.37 1.21 1.78 16 2 O -0.30 -9.35 9.98 -86.73 -0.87 -10.22 16 3 C 0.29 8.34 7.85 85.71 0.67 9.01 16 4 N -0.37 -8.59 11.90 -170.00 -2.02 -10.61 16 5 N -0.34 -4.84 3.97 -367.79 -1.46 -6.30 16 6 C 0.09 0.26 11.44 127.77 1.46 1.72 16 7 C 0.16 2.17 10.98 84.31 0.93 3.10 16 8 C -0.33 -8.51 6.14 -20.08 -0.12 -8.63 16 9 C 0.59 19.10 7.77 86.61 0.67 19.78 16 10 O -0.59 -25.42 16.09 1.03 0.02 -25.41 16 11 N -0.70 -18.94 4.35 -445.86 -1.94 -20.88 16 12 C 0.17 6.05 1.88 45.02 0.08 6.14 16 13 H 0.05 2.11 7.57 -2.38 -0.02 2.09 16 14 C -0.12 -4.65 5.65 30.67 0.17 -4.48 16 15 C 0.14 6.49 6.52 86.36 0.56 7.05 16 16 N -0.61 -31.22 2.99 -699.10 -2.09 -33.31 16 17 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 18 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 19 C -0.05 -2.76 4.91 84.86 0.42 -2.34 16 20 N -0.94 -55.36 11.19 21.65 0.24 -55.12 16 21 Si 0.97 44.44 29.59 68.60 2.03 46.47 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.19 9.03 4.59 86.36 0.40 9.43 16 26 C -0.11 -3.70 2.46 -10.72 -0.03 -3.73 16 27 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 28 C -0.13 -3.83 9.03 71.98 0.65 -3.18 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.24 0.60 7.46 -2.91 -0.02 0.57 16 36 H 0.41 7.35 7.23 -92.71 -0.67 6.68 16 37 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.06 3.45 6.04 -2.39 -0.01 3.43 16 43 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 44 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.08 1.73 7.36 -2.39 -0.02 1.71 16 Total: -1.00 -84.18 376.51 2.10 -82.08 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.31 Total: 11.36 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 7.88 Total: 21.94 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -7.28 Total: -126.23 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.85 Total: -35.63 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -84.18 2.10 -82.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942555128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.593 kcal (2) G-P(sol) polarization free energy of solvation -84.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds