Wall clock time and date at job start Tue Mar 31 2020 14:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35848 * 117.00475 * 2 1 4 4 N 1.30808 * 126.05786 * 359.97438 * 3 2 1 5 5 N 1.39913 * 108.88242 * 180.02562 * 4 3 2 6 6 C 1.46499 * 125.69152 * 180.02562 * 5 4 3 7 7 C 1.34168 * 108.62436 * 359.74885 * 5 4 3 8 8 C 1.38137 * 107.50151 * 0.39622 * 7 5 4 9 9 C 1.47252 * 126.44355 * 179.87466 * 8 7 5 10 10 O 1.21622 * 119.99747 * 179.68816 * 9 8 7 11 11 N 1.34777 * 119.99900 * 359.68066 * 9 8 7 12 12 C 1.46500 * 119.99759 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.46203 * 325.03237 * 12 11 9 14 14 C 1.53042 * 109.45610 * 85.00789 * 12 11 9 15 15 C 1.53187 * 109.31570 * 58.63826 * 14 12 11 16 16 N 1.46931 * 108.77713 * 54.63511 * 15 14 12 17 17 C 1.36939 * 120.63362 * 126.40875 * 16 15 14 18 18 H 1.08000 * 119.99962 * 207.67081 * 17 16 15 19 19 C 1.38809 * 119.99652 * 27.66906 * 17 16 15 20 20 N 1.31626 * 120.00360 * 17.36552 * 19 17 16 21 21 Si 1.86803 * 120.00115 * 197.36723 * 19 17 16 22 22 H 1.48495 * 109.47230 * 89.99720 * 21 19 17 23 23 H 1.48501 * 109.47350 * 210.00184 * 21 19 17 24 24 H 1.48504 * 109.46763 * 329.99732 * 21 19 17 25 25 C 1.46926 * 118.73486 * 306.39632 * 16 15 14 26 26 C 1.53041 * 109.44796 * 205.06271 * 12 11 9 27 27 H 1.09003 * 109.49413 * 181.40267 * 26 12 11 28 28 C 1.53000 * 109.49699 * 61.31121 * 26 12 11 29 29 H 1.09002 * 109.46527 * 59.99969 * 1 2 3 30 30 H 1.08991 * 109.47690 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47166 * 300.00634 * 1 2 3 32 32 H 1.09005 * 109.47202 * 89.97754 * 6 5 4 33 33 H 1.08996 * 109.47415 * 209.97681 * 6 5 4 34 34 H 1.08997 * 109.47308 * 329.97760 * 6 5 4 35 35 H 1.07995 * 126.24845 * 180.26278 * 7 5 4 36 36 H 0.97001 * 120.00211 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.49733 * 298.68662 * 14 12 11 38 38 H 1.09004 * 109.52295 * 178.60737 * 14 12 11 39 39 H 1.09003 * 109.59124 * 294.85217 * 15 14 12 40 40 H 1.09000 * 109.59168 * 174.41813 * 15 14 12 41 41 H 0.96994 * 119.99972 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.58210 * 173.39460 * 25 16 15 43 43 H 1.09000 * 109.58519 * 293.81100 * 25 16 15 44 44 H 1.09002 * 109.46958 * 300.15694 * 28 26 12 45 45 H 1.09000 * 109.47086 * 60.15513 * 28 26 12 46 46 H 1.09002 * 109.47060 * 180.16078 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4533 2.3765 -0.0005 5 7 2.4283 3.3799 -0.0009 6 6 2.1707 4.8221 -0.0009 7 6 3.6387 2.8011 0.0049 8 6 3.4452 1.4334 -0.0001 9 6 4.4956 0.4013 0.0009 10 8 4.1911 -0.7761 0.0018 11 7 5.7943 0.7616 0.0007 12 6 6.8392 -0.2652 0.0022 13 1 6.5079 -1.1196 0.5922 14 6 7.1151 -0.7139 -1.4347 15 6 7.5471 0.4958 -2.2693 16 7 8.6896 1.1421 -1.6091 17 6 9.8510 1.3765 -2.2957 18 1 10.7917 1.4193 -1.7669 19 6 9.8192 1.5592 -3.6713 20 7 8.6835 1.8481 -4.2708 21 14 11.3880 1.3950 -4.6720 22 1 11.5490 -0.0139 -5.1125 23 1 11.3111 2.2801 -5.8619 24 1 12.5512 1.7885 -3.8368 25 6 8.5622 1.5322 -0.1983 26 6 8.1188 0.3109 0.6130 27 1 8.9042 -0.4447 0.5917 28 6 7.8506 0.7290 2.0601 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 2.1067 5.1798 1.0268 33 1 2.9829 5.3363 -0.5147 34 1 1.2308 5.0232 -0.5148 35 1 4.5905 3.3114 0.0101 36 1 6.0371 1.7007 0.0002 37 1 6.2095 -1.1455 -1.8613 38 1 7.9097 -1.4601 -1.4371 39 1 6.7205 1.2025 -2.3436 40 1 7.8397 0.1664 -3.2662 41 1 8.6614 1.9761 -5.2320 42 1 9.5246 1.8866 0.1711 43 1 7.8184 2.3234 -0.1038 44 1 7.0641 1.4835 2.0805 45 1 7.5350 -0.1404 2.6369 46 1 8.7614 1.1418 2.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942555129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:41 Heat of formation + Delta-G solvation = 32.116981 kcal Electronic energy + Delta-G solvation = -28444.552295 eV Core-core repulsion = 24565.436061 eV Total energy + Delta-G solvation = -3879.116235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50902 -39.41078 -38.28387 -37.29409 -34.14935 -33.00093 -32.43374 -31.16223 -30.63343 -29.48782 -27.98530 -26.39881 -25.78523 -25.11696 -22.93184 -21.89917 -21.02437 -20.98888 -20.17932 -18.47955 -17.97108 -16.93926 -16.62051 -16.33490 -15.79403 -15.15170 -15.07573 -14.97490 -14.74678 -14.41399 -13.97603 -13.80207 -13.63979 -13.31056 -12.94928 -12.93490 -12.89650 -12.65387 -12.46694 -12.02062 -11.99908 -11.43689 -11.32662 -11.28191 -11.04986 -10.89956 -10.75064 -10.69001 -10.30414 -10.15732 -10.00272 -9.68440 -9.43058 -9.35636 -9.19601 -8.59459 -8.45694 -8.30639 -6.66745 -5.78522 -3.21243 1.46052 2.08730 2.30413 3.18356 3.38167 3.45548 3.45821 3.73958 3.84680 4.28341 4.49325 4.59441 4.87656 4.96796 5.12530 5.15668 5.16971 5.22468 5.33990 5.37781 5.41706 5.42416 5.54323 5.60469 5.69157 5.73258 6.02017 6.04905 6.13587 6.23506 6.33121 6.45484 6.51337 6.65128 6.71321 6.74972 6.85236 6.94642 7.15588 7.16639 7.42966 7.54725 7.71502 7.80646 8.07698 8.44960 8.79424 9.21353 9.84917 10.40941 11.29186 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003549 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.751000 B = 7887.714009 C = 8302.596102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.266 6.266 3 C 0.314 3.686 4 N -0.356 5.356 5 N -0.350 5.350 6 C 0.100 3.900 7 C 0.125 3.875 8 C -0.285 4.285 9 C 0.592 3.408 10 O -0.541 6.541 11 N -0.711 5.711 12 C 0.164 3.836 13 H 0.073 0.927 14 C -0.155 4.155 15 C 0.175 3.825 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.154 3.846 26 C -0.119 4.119 27 H 0.081 0.919 28 C -0.141 4.141 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.395 0.605 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.055 0.945 43 H 0.012 0.988 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.717 4.685 11.240 17.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.109 3.891 4 N -0.196 5.196 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.027 4.027 8 C -0.300 4.300 9 C 0.379 3.621 10 O -0.418 6.418 11 N -0.363 5.363 12 C 0.059 3.941 13 H 0.091 0.909 14 C -0.195 4.195 15 C 0.049 3.951 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.027 3.973 26 C -0.140 4.140 27 H 0.099 0.901 28 C -0.199 4.199 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.207 0.793 36 H 0.230 0.770 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.011 4.269 11.044 18.344 hybrid contribution 1.365 0.234 -0.701 1.552 sum -12.646 4.503 10.343 16.947 Atomic orbital electron populations 1.23005 0.78070 1.03626 1.01804 1.86524 1.21471 1.20487 1.88303 1.20394 0.90158 0.85148 0.93376 1.77255 1.13277 0.94615 1.34501 1.47632 1.03162 1.06421 1.55987 1.22001 1.04636 0.73628 1.03773 1.23117 0.91208 0.92275 0.96144 1.19808 0.91910 0.92680 1.25640 1.17017 0.81611 0.87359 0.76149 1.90768 1.82325 1.18020 1.50725 1.45888 1.04946 1.10337 1.75102 1.20832 0.86023 0.89963 0.97233 0.90906 1.22561 1.00327 1.00872 0.95713 1.20720 0.88421 0.89893 0.96036 1.44082 1.13519 1.67579 1.06220 1.19180 0.85548 1.43492 0.90071 0.91708 1.25012 0.96680 0.99895 0.97901 1.70037 1.24931 1.50317 1.09230 0.86316 0.83122 0.77632 0.79829 1.21454 1.21857 1.20480 1.20887 0.98170 0.92215 0.86045 1.21951 0.96800 1.00945 0.94321 0.90091 1.21755 1.00973 1.00904 0.96227 0.92553 0.88143 0.92658 0.90308 0.88655 0.88960 0.79309 0.76984 0.92611 0.91961 0.96340 0.89723 0.93689 0.92612 0.97072 0.93102 0.93268 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.27 -4.31 9.98 -24.62 -0.25 -4.55 16 3 C 0.31 5.06 7.85 -16.66 -0.13 4.93 16 4 N -0.36 -5.03 11.90 30.79 0.37 -4.66 16 5 N -0.35 -3.93 3.97 -67.60 -0.27 -4.20 16 6 C 0.10 0.61 11.44 59.85 0.68 1.29 16 7 C 0.12 1.47 10.98 -16.57 -0.18 1.29 16 8 C -0.29 -4.50 6.14 -104.95 -0.64 -5.14 16 9 C 0.59 10.70 7.77 -12.60 -0.10 10.61 16 10 O -0.54 -11.68 16.09 -0.10 0.00 -11.68 16 11 N -0.71 -11.70 3.58 -54.90 -0.20 -11.90 16 12 C 0.16 2.89 2.21 -67.89 -0.15 2.74 16 13 H 0.07 1.33 7.57 -51.93 -0.39 0.93 16 14 C -0.15 -3.15 5.77 -26.61 -0.15 -3.30 16 15 C 0.17 4.13 5.05 -3.71 -0.02 4.11 16 16 N -0.59 -14.07 3.00 -172.32 -0.52 -14.59 16 17 C -0.25 -6.73 9.59 -15.06 -0.14 -6.87 16 18 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 19 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 20 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 21 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.15 2.93 5.50 -3.71 -0.02 2.91 16 26 C -0.12 -1.95 2.67 -90.50 -0.24 -2.19 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 C -0.14 -1.85 9.06 37.16 0.34 -1.52 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.19 1.58 7.46 -52.49 -0.39 1.19 16 36 H 0.39 5.86 5.65 -40.82 -0.23 5.63 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.46 7.74 -51.93 -0.40 0.05 16 40 H 0.08 2.30 6.04 -51.93 -0.31 1.98 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 43 H 0.01 0.21 6.64 -51.93 -0.34 -0.14 16 44 H 0.05 0.63 7.53 -51.93 -0.39 0.24 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -34.82 372.57 -6.50 -41.32 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.08 Total: 3.01 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 0.23 Total: 10.29 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.01 Total: -60.39 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.25 Total: -16.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.82 -6.50 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942555129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.441 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds