Wall clock time and date at job start Tue Mar 31 2020 14:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35848 * 117.00475 * 2 1 4 4 N 1.30808 * 126.05786 * 359.97438 * 3 2 1 5 5 N 1.39913 * 108.88242 * 180.02562 * 4 3 2 6 6 C 1.46499 * 125.69152 * 180.02562 * 5 4 3 7 7 C 1.34168 * 108.62436 * 359.74885 * 5 4 3 8 8 C 1.38137 * 107.50151 * 0.39622 * 7 5 4 9 9 C 1.47252 * 126.44355 * 179.87466 * 8 7 5 10 10 O 1.21622 * 119.99747 * 179.68816 * 9 8 7 11 11 N 1.34777 * 119.99900 * 359.68066 * 9 8 7 12 12 C 1.46500 * 119.99759 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.46203 * 325.03237 * 12 11 9 14 14 C 1.53042 * 109.45610 * 85.00789 * 12 11 9 15 15 C 1.53187 * 109.31570 * 58.63826 * 14 12 11 16 16 N 1.46931 * 108.77713 * 54.63511 * 15 14 12 17 17 C 1.36939 * 120.63362 * 126.40875 * 16 15 14 18 18 H 1.08000 * 119.99962 * 207.67081 * 17 16 15 19 19 C 1.38809 * 119.99652 * 27.66906 * 17 16 15 20 20 N 1.31626 * 120.00360 * 17.36552 * 19 17 16 21 21 Si 1.86803 * 120.00115 * 197.36723 * 19 17 16 22 22 H 1.48495 * 109.47230 * 89.99720 * 21 19 17 23 23 H 1.48501 * 109.47350 * 210.00184 * 21 19 17 24 24 H 1.48504 * 109.46763 * 329.99732 * 21 19 17 25 25 C 1.46926 * 118.73486 * 306.39632 * 16 15 14 26 26 C 1.53041 * 109.44796 * 205.06271 * 12 11 9 27 27 H 1.09003 * 109.49413 * 181.40267 * 26 12 11 28 28 C 1.53000 * 109.49699 * 61.31121 * 26 12 11 29 29 H 1.09002 * 109.46527 * 59.99969 * 1 2 3 30 30 H 1.08991 * 109.47690 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47166 * 300.00634 * 1 2 3 32 32 H 1.09005 * 109.47202 * 89.97754 * 6 5 4 33 33 H 1.08996 * 109.47415 * 209.97681 * 6 5 4 34 34 H 1.08997 * 109.47308 * 329.97760 * 6 5 4 35 35 H 1.07995 * 126.24845 * 180.26278 * 7 5 4 36 36 H 0.97001 * 120.00211 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.49733 * 298.68662 * 14 12 11 38 38 H 1.09004 * 109.52295 * 178.60737 * 14 12 11 39 39 H 1.09003 * 109.59124 * 294.85217 * 15 14 12 40 40 H 1.09000 * 109.59168 * 174.41813 * 15 14 12 41 41 H 0.96994 * 119.99972 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.58210 * 173.39460 * 25 16 15 43 43 H 1.09000 * 109.58519 * 293.81100 * 25 16 15 44 44 H 1.09002 * 109.46958 * 300.15694 * 28 26 12 45 45 H 1.09000 * 109.47086 * 60.15513 * 28 26 12 46 46 H 1.09002 * 109.47060 * 180.16078 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4533 2.3765 -0.0005 5 7 2.4283 3.3799 -0.0009 6 6 2.1707 4.8221 -0.0009 7 6 3.6387 2.8011 0.0049 8 6 3.4452 1.4334 -0.0001 9 6 4.4956 0.4013 0.0009 10 8 4.1911 -0.7761 0.0018 11 7 5.7943 0.7616 0.0007 12 6 6.8392 -0.2652 0.0022 13 1 6.5079 -1.1196 0.5922 14 6 7.1151 -0.7139 -1.4347 15 6 7.5471 0.4958 -2.2693 16 7 8.6896 1.1421 -1.6091 17 6 9.8510 1.3765 -2.2957 18 1 10.7917 1.4193 -1.7669 19 6 9.8192 1.5592 -3.6713 20 7 8.6835 1.8481 -4.2708 21 14 11.3880 1.3950 -4.6720 22 1 11.5490 -0.0139 -5.1125 23 1 11.3111 2.2801 -5.8619 24 1 12.5512 1.7885 -3.8368 25 6 8.5622 1.5322 -0.1983 26 6 8.1188 0.3109 0.6130 27 1 8.9042 -0.4447 0.5917 28 6 7.8506 0.7290 2.0601 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 2.1067 5.1798 1.0268 33 1 2.9829 5.3363 -0.5147 34 1 1.2308 5.0232 -0.5148 35 1 4.5905 3.3114 0.0101 36 1 6.0371 1.7007 0.0002 37 1 6.2095 -1.1455 -1.8613 38 1 7.9097 -1.4601 -1.4371 39 1 6.7205 1.2025 -2.3436 40 1 7.8397 0.1664 -3.2662 41 1 8.6614 1.9761 -5.2320 42 1 9.5246 1.8866 0.1711 43 1 7.8184 2.3234 -0.1038 44 1 7.0641 1.4835 2.0805 45 1 7.5350 -0.1404 2.6369 46 1 8.7614 1.1418 2.4938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942555129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:40 Heat of formation + Delta-G solvation = 6.710402 kcal Electronic energy + Delta-G solvation = -28445.654007 eV Core-core repulsion = 24565.436061 eV Total energy + Delta-G solvation = -3880.217947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.53171 -40.85274 -39.32650 -38.83256 -35.89813 -34.02634 -33.72906 -32.83612 -32.13578 -30.85562 -28.82332 -27.39956 -27.32360 -26.68017 -24.24973 -23.42997 -22.64227 -21.98337 -21.38731 -20.00347 -19.17281 -18.50198 -18.00853 -17.34119 -16.91976 -16.76100 -16.30766 -16.05298 -15.94445 -15.80392 -15.60984 -15.29482 -15.03068 -14.70328 -14.46608 -14.17032 -13.96915 -13.50931 -13.47896 -13.43754 -13.09905 -12.93467 -12.85197 -12.63743 -12.49394 -12.31581 -12.15257 -12.13550 -11.94435 -11.89760 -11.59698 -11.40566 -11.05132 -10.83910 -10.48448 -10.23624 -9.92222 -9.47003 -8.61466 -7.82373 -5.26537 0.48200 1.13296 1.26512 1.48626 1.51923 1.58697 2.19106 2.47096 2.53850 2.55991 3.32651 3.40036 3.72865 3.77281 3.87273 4.15871 4.19770 4.24865 4.29461 4.32797 4.35309 4.48313 4.49571 4.55665 4.61848 4.68578 4.72774 4.74235 4.77055 4.84760 4.90927 5.06563 5.09988 5.17976 5.27246 5.37665 5.49499 5.58727 5.67592 5.72104 5.80170 5.84751 6.15822 6.43334 6.49692 6.77707 7.19486 7.44906 7.91817 8.42858 9.23046 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.003549 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.751000 B = 7887.714009 C = 8302.596102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.294 3.706 4 N -0.366 5.366 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.150 3.850 8 C -0.328 4.328 9 C 0.592 3.408 10 O -0.586 6.586 11 N -0.700 5.700 12 C 0.170 3.830 13 H 0.071 0.929 14 C -0.144 4.144 15 C 0.190 3.810 16 N -0.606 5.606 17 C -0.257 4.257 18 H 0.069 0.931 19 C -0.048 4.048 20 N -0.932 5.932 21 Si 0.959 3.041 22 H -0.292 1.292 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.151 3.849 26 C -0.106 4.106 27 H 0.075 0.925 28 C -0.133 4.133 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.228 0.772 36 H 0.404 0.596 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.005 0.995 40 H 0.044 0.956 41 H 0.247 0.753 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 6.683 13.036 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.201 6.201 3 C 0.089 3.911 4 N -0.207 5.207 5 N -0.120 5.120 6 C -0.051 4.051 7 C -0.005 4.005 8 C -0.344 4.344 9 C 0.381 3.619 10 O -0.467 6.467 11 N -0.352 5.352 12 C 0.065 3.935 13 H 0.089 0.911 14 C -0.184 4.184 15 C 0.064 3.936 16 N -0.329 5.329 17 C -0.388 4.388 18 H 0.087 0.913 19 C -0.244 4.244 20 N -0.578 5.578 21 Si 0.789 3.211 22 H -0.220 1.220 23 H -0.224 1.224 24 H -0.191 1.191 25 C 0.026 3.974 26 C -0.127 4.127 27 H 0.093 0.907 28 C -0.190 4.190 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.244 0.756 36 H 0.242 0.758 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.620 6.318 12.883 19.784 hybrid contribution 1.172 -0.299 -1.236 1.729 sum -12.448 6.019 11.647 18.079 Atomic orbital electron populations 1.23232 0.75997 1.05204 1.02297 1.86460 1.23798 1.21401 1.88429 1.20659 0.90612 0.85547 0.94264 1.77212 1.14243 0.94618 1.34636 1.48148 1.02551 1.07720 1.53611 1.22509 1.06136 0.70625 1.05830 1.23552 0.92638 0.90952 0.93372 1.19788 0.91314 0.93915 1.29338 1.17368 0.82226 0.87303 0.75039 1.90731 1.82994 1.20034 1.52973 1.45721 1.04317 1.10490 1.74645 1.20692 0.87155 0.90565 0.95052 0.91124 1.22404 0.99376 0.99372 0.97292 1.20371 0.87972 0.90502 0.94749 1.44260 1.12713 1.67993 1.07974 1.19510 0.86700 1.42018 0.90529 0.91312 1.25686 0.99147 1.00529 0.98989 1.70175 1.26732 1.52034 1.08856 0.85381 0.80539 0.76898 0.78317 1.21973 1.22417 1.19061 1.21091 0.99142 0.93738 0.83464 1.21803 0.95460 0.99424 0.95986 0.90700 1.21688 1.02261 1.01576 0.93507 0.92293 0.86111 0.91814 0.88010 0.85891 0.88418 0.75619 0.75845 0.94024 0.92265 0.97735 0.93771 0.94402 0.92123 0.95254 0.91990 0.92606 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.70 113.37 1.21 1.82 16 2 O -0.30 -9.93 9.98 -86.72 -0.87 -10.80 16 3 C 0.29 9.50 7.85 85.70 0.67 10.17 16 4 N -0.37 -9.96 11.90 -170.00 -2.02 -11.99 16 5 N -0.34 -6.75 3.97 -367.78 -1.46 -8.22 16 6 C 0.09 0.74 11.44 127.77 1.46 2.20 16 7 C 0.15 3.17 10.98 84.31 0.93 4.09 16 8 C -0.33 -10.20 6.14 -20.08 -0.12 -10.32 16 9 C 0.59 21.48 7.77 86.61 0.67 22.15 16 10 O -0.59 -26.11 16.09 1.02 0.02 -26.09 16 11 N -0.70 -22.35 3.58 -445.84 -1.60 -23.95 16 12 C 0.17 5.90 2.21 45.02 0.10 6.00 16 13 H 0.07 2.54 7.57 -2.39 -0.02 2.52 16 14 C -0.14 -5.99 5.77 30.67 0.18 -5.82 16 15 C 0.19 9.16 5.05 86.36 0.44 9.59 16 16 N -0.61 -28.56 3.00 -699.10 -2.09 -30.65 16 17 C -0.26 -13.55 9.59 84.03 0.81 -12.74 16 18 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 19 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 20 N -0.93 -54.10 11.19 21.65 0.24 -53.86 16 21 Si 0.96 44.25 29.59 68.60 2.03 46.28 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 25 C 0.15 5.42 5.50 86.36 0.48 5.89 16 26 C -0.11 -3.25 2.67 -10.72 -0.03 -3.27 16 27 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 28 C -0.13 -3.03 9.06 71.98 0.65 -2.38 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.23 2.85 7.46 -2.91 -0.02 2.83 16 36 H 0.40 11.12 5.65 -92.71 -0.52 10.60 16 37 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.00 0.23 7.74 -2.39 -0.02 0.21 16 40 H 0.04 2.48 6.04 -2.39 -0.01 2.47 16 41 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.06 2.13 7.93 -2.38 -0.02 2.11 16 43 H 0.03 0.97 6.64 -2.39 -0.02 0.96 16 44 H 0.06 1.29 7.53 -2.39 -0.02 1.28 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -78.44 372.57 2.57 -75.88 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.46 Total: 18.23 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: 7.86 Total: 25.17 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -6.93 Total: -128.67 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.85 Total: -36.89 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -78.44 2.57 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942555129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.588 kcal (2) G-P(sol) polarization free energy of solvation -78.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds