Wall clock time and date at job start Tue Mar 31 2020 14:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35351 * 116.99727 * 2 1 4 4 C 1.38997 * 126.40951 * 93.57856 * 3 2 1 5 5 C 1.46926 * 126.49314 * 359.97438 * 4 3 2 6 6 O 1.21670 * 119.99925 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99846 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00168 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46203 * 325.02956 * 8 7 5 10 10 C 1.53042 * 109.45946 * 85.00243 * 8 7 5 11 11 C 1.53189 * 109.31438 * 181.38966 * 10 8 7 12 12 N 1.46922 * 108.77549 * 305.36277 * 11 10 8 13 13 C 1.36941 * 120.63416 * 233.63242 * 12 11 10 14 14 H 1.08002 * 119.99305 * 27.83402 * 13 12 11 15 15 C 1.38809 * 120.00252 * 207.83780 * 13 12 11 16 16 N 1.31615 * 120.00145 * 14.56353 * 15 13 12 17 17 Si 1.86797 * 120.00078 * 194.56670 * 15 13 12 18 18 H 1.48495 * 109.47353 * 89.99593 * 17 15 13 19 19 H 1.48498 * 109.47108 * 209.99887 * 17 15 13 20 20 H 1.48507 * 109.47054 * 329.99837 * 17 15 13 21 21 C 1.46924 * 118.74024 * 53.60600 * 12 11 10 22 22 C 1.53040 * 109.46417 * 205.06797 * 8 7 5 23 23 H 1.08998 * 109.49872 * 298.57041 * 22 8 7 24 24 C 1.53001 * 109.49578 * 58.66682 * 22 8 7 25 25 C 1.41455 * 107.00662 * 179.90607 * 4 3 2 26 26 N 1.30317 * 108.14090 * 0.35948 * 25 4 3 27 27 N 1.34666 * 126.40164 * 273.88632 * 3 2 1 28 28 C 1.46499 * 125.74270 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47205 * 295.26313 * 1 2 3 30 30 H 1.09000 * 109.47435 * 55.26101 * 1 2 3 31 31 H 1.09001 * 109.46989 * 175.26230 * 1 2 3 32 32 H 0.97004 * 120.00142 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.49375 * 301.33804 * 10 8 7 34 34 H 1.08997 * 109.50027 * 61.43489 * 10 8 7 35 35 H 1.09002 * 109.58926 * 65.15043 * 11 10 8 36 36 H 1.09004 * 109.58697 * 185.57749 * 11 10 8 37 37 H 0.96997 * 120.00732 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.58519 * 66.18123 * 21 12 11 39 39 H 1.08998 * 109.59126 * 186.60516 * 21 12 11 40 40 H 1.08994 * 109.47294 * 59.99522 * 24 22 8 41 41 H 1.08997 * 109.47522 * 180.02562 * 24 22 8 42 42 H 1.09004 * 109.46954 * 299.99778 * 24 22 8 43 43 H 1.08009 * 125.93036 * 180.10081 * 25 4 3 44 44 H 1.08991 * 109.47528 * 94.47171 * 28 27 3 45 45 H 1.09001 * 109.46497 * 214.47248 * 28 27 3 46 46 H 1.09000 * 109.46803 * 334.46445 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4802 1.9094 1.1165 5 6 2.3617 1.4850 2.5181 6 8 1.8376 0.4210 2.7893 7 7 2.8327 2.2748 3.5034 8 6 2.7142 1.8519 4.9009 9 1 1.7817 1.3039 5.0367 10 6 3.8945 0.9471 5.2617 11 6 3.7490 0.4789 6.7131 12 7 3.6060 1.6578 7.5781 13 6 4.4332 1.8379 8.6545 14 1 5.4296 1.4214 8.6453 15 6 3.9910 2.5557 9.7573 16 7 2.7091 2.8162 9.9021 17 14 5.2154 3.1521 11.0357 18 1 5.7021 4.5044 10.6621 19 1 4.5540 3.2135 12.3638 20 1 6.3637 2.2124 11.0975 21 6 2.5589 2.6402 7.2662 22 6 2.7178 3.0841 5.8086 23 1 3.6602 3.6191 5.6919 24 6 1.5567 4.0039 5.4255 25 6 3.0617 3.1106 0.6473 26 7 2.9704 3.1249 -0.6526 27 7 2.3408 1.9514 -1.0814 28 6 2.0522 1.5943 -2.4726 29 1 -0.3633 0.4386 0.9294 30 1 -0.3634 0.5856 -0.8445 31 1 -0.3633 -1.0242 -0.0849 32 1 3.2496 3.1236 3.2872 33 1 3.9049 0.0813 4.5995 34 1 4.8259 1.5022 5.1502 35 1 2.8652 -0.1523 6.8065 36 1 4.6353 -0.0840 7.0061 37 1 2.4000 3.3181 10.6724 38 1 1.5781 2.1852 7.4047 39 1 2.6599 3.5033 7.9241 40 1 0.6147 3.4685 5.5438 41 1 1.5599 4.8815 6.0719 42 1 1.6686 4.3172 4.3875 43 1 3.5010 3.8837 1.2603 44 1 1.1032 2.0387 -2.7725 45 1 2.8482 1.9686 -3.1163 46 1 1.9907 0.5099 -2.5640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944346312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:51 Heat of formation + Delta-G solvation = 29.582197 kcal Electronic energy + Delta-G solvation = -28035.497433 eV Core-core repulsion = 24156.271281 eV Total energy + Delta-G solvation = -3879.226151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76671 -39.35218 -38.36489 -37.36645 -34.39111 -33.69891 -32.16300 -31.78002 -30.24293 -29.30297 -27.66626 -27.04506 -25.86333 -24.98314 -23.05103 -21.90511 -21.18408 -20.76934 -20.04706 -19.33733 -18.29536 -17.00268 -16.72216 -16.49488 -16.05360 -15.41756 -14.98493 -14.84421 -14.77221 -14.40681 -13.91894 -13.85536 -13.70848 -13.50946 -13.11725 -13.07024 -12.92131 -12.78363 -12.42356 -12.22260 -11.97633 -11.56439 -11.39968 -11.24381 -11.00043 -10.71939 -10.59444 -10.51116 -10.27286 -10.09354 -9.93476 -9.79527 -9.74436 -9.59191 -9.37015 -8.89784 -8.53624 -8.38492 -6.63776 -5.75010 -3.18484 1.02838 1.83074 1.97123 3.21399 3.39717 3.46777 3.48093 3.53309 3.63880 4.14367 4.52146 4.66442 4.69131 4.73826 4.89727 4.97688 5.00605 5.09905 5.29337 5.33662 5.38048 5.51928 5.53535 5.67630 5.76147 5.79567 5.96805 6.10701 6.16830 6.22817 6.33532 6.44285 6.55891 6.61101 6.69146 6.76804 6.86533 7.06050 7.06551 7.08640 7.21164 7.41099 7.70619 7.81718 7.90903 8.49118 8.59361 9.25255 9.88056 10.44800 11.33231 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028081 B = 0.002752 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.872847 B =10170.888227 C =10399.622112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.317 3.683 4 C -0.290 4.290 5 C 0.590 3.410 6 O -0.542 6.542 7 N -0.717 5.717 8 C 0.160 3.840 9 H 0.081 0.919 10 C -0.140 4.140 11 C 0.148 3.852 12 N -0.594 5.594 13 C -0.248 4.248 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.905 5.905 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.180 3.820 22 C -0.123 4.123 23 H 0.067 0.933 24 C -0.138 4.138 25 C 0.091 3.909 26 N -0.280 5.280 27 N -0.373 5.373 28 C 0.094 3.906 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.393 0.607 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.195 0.805 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.995 0.518 -23.927 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.144 3.856 4 C -0.306 4.306 5 C 0.377 3.623 6 O -0.420 6.420 7 N -0.367 5.367 8 C 0.057 3.943 9 H 0.099 0.901 10 C -0.180 4.180 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.378 4.378 14 H 0.084 0.916 15 C -0.198 4.198 16 N -0.550 5.550 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.053 3.947 22 C -0.143 4.143 23 H 0.085 0.915 24 C -0.196 4.196 25 C -0.096 4.096 26 N -0.103 5.103 27 N -0.163 5.163 28 C -0.047 4.047 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.124 0.876 32 H 0.226 0.774 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.212 0.788 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.187 0.159 -24.724 25.077 hybrid contribution 0.480 0.433 1.095 1.272 sum -3.707 0.592 -23.629 23.925 Atomic orbital electron populations 1.23136 0.76705 1.04176 1.01505 1.86023 1.21343 1.20239 1.92873 1.19336 0.95220 0.84677 0.86351 1.20219 1.18028 0.98643 0.93726 1.16961 0.78205 0.83939 0.83235 1.90799 1.44727 1.22560 1.83876 1.46041 1.61129 1.22628 1.06874 1.21026 0.99389 0.96023 0.77863 0.90066 1.22391 0.97777 0.98830 0.99049 1.20881 0.98771 0.89925 0.88365 1.44108 1.38377 1.19696 1.29441 1.19225 0.93797 1.31775 0.93021 0.91630 1.25053 0.95543 1.02249 0.96932 1.69991 1.12121 1.43153 1.29760 0.86264 0.80557 0.78899 0.80897 1.21501 1.21791 1.20485 1.20851 0.90335 0.94595 0.88872 1.22173 0.98311 0.94474 0.99385 0.91461 1.21718 0.98613 0.99522 0.99767 1.23952 0.97036 0.96715 0.91880 1.77208 1.18775 1.00852 1.13473 1.48947 1.45963 1.14553 1.06809 1.21974 1.02978 1.02241 0.77526 0.91833 0.93695 0.87613 0.77356 0.92611 0.92358 0.96199 0.92648 0.93642 0.96260 0.88645 0.93095 0.92688 0.93849 0.78787 0.90371 0.88681 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.13 101.05 1.12 1.48 16 2 O -0.30 -3.69 9.74 -25.00 -0.24 -3.93 16 3 C 0.32 4.02 6.98 -16.03 -0.11 3.90 16 4 C -0.29 -3.90 6.15 -104.87 -0.64 -4.54 16 5 C 0.59 9.38 7.76 -12.74 -0.10 9.28 16 6 O -0.54 -10.52 16.04 -2.04 -0.03 -10.55 16 7 N -0.72 -10.45 4.36 -55.00 -0.24 -10.69 16 8 C 0.16 2.83 1.88 -67.89 -0.13 2.70 16 9 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 10 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 11 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 12 N -0.59 -14.90 3.00 -172.32 -0.52 -15.41 16 13 C -0.25 -6.80 9.60 -15.06 -0.14 -6.95 16 14 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 15 C 0.00 0.01 4.98 -17.43 -0.09 -0.08 16 16 N -0.91 -26.06 11.02 55.49 0.61 -25.45 16 17 Si 0.90 21.64 29.58 -169.99 -5.03 16.62 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.18 4.21 4.58 -3.71 -0.02 4.19 16 22 C -0.12 -2.23 2.46 -90.50 -0.22 -2.45 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 C -0.14 -2.14 9.03 37.16 0.34 -1.81 16 25 C 0.09 0.99 11.50 -16.97 -0.20 0.80 16 26 N -0.28 -3.21 12.48 30.88 0.39 -2.82 16 27 N -0.37 -3.94 3.99 -67.67 -0.27 -4.21 16 28 C 0.09 0.55 11.41 59.85 0.68 1.23 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 4.61 7.25 -40.82 -0.30 4.32 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.10 2.49 5.95 -51.93 -0.31 2.19 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.56 7.36 -51.93 -0.38 0.18 16 43 H 0.20 1.44 7.50 -52.48 -0.39 1.05 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.44 8.02 -51.93 -0.42 0.02 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -34.18 376.62 -6.56 -40.74 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.22 Total: 1.85 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.32 Total: 8.18 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.03 Total: -58.59 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.28 Total: -14.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.18 -6.56 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944346312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.326 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds