Wall clock time and date at job start Tue Mar 31 2020 14:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35351 * 116.99727 * 2 1 4 4 C 1.38997 * 126.40951 * 93.57856 * 3 2 1 5 5 C 1.46926 * 126.49314 * 359.97438 * 4 3 2 6 6 O 1.21670 * 119.99925 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99846 * 180.02562 * 5 4 3 8 8 C 1.46494 * 120.00168 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46203 * 325.02956 * 8 7 5 10 10 C 1.53042 * 109.45946 * 85.00243 * 8 7 5 11 11 C 1.53189 * 109.31438 * 181.38966 * 10 8 7 12 12 N 1.46922 * 108.77549 * 305.36277 * 11 10 8 13 13 C 1.36941 * 120.63416 * 233.63242 * 12 11 10 14 14 H 1.08002 * 119.99305 * 27.83402 * 13 12 11 15 15 C 1.38809 * 120.00252 * 207.83780 * 13 12 11 16 16 N 1.31615 * 120.00145 * 14.56353 * 15 13 12 17 17 Si 1.86797 * 120.00078 * 194.56670 * 15 13 12 18 18 H 1.48495 * 109.47353 * 89.99593 * 17 15 13 19 19 H 1.48498 * 109.47108 * 209.99887 * 17 15 13 20 20 H 1.48507 * 109.47054 * 329.99837 * 17 15 13 21 21 C 1.46924 * 118.74024 * 53.60600 * 12 11 10 22 22 C 1.53040 * 109.46417 * 205.06797 * 8 7 5 23 23 H 1.08998 * 109.49872 * 298.57041 * 22 8 7 24 24 C 1.53001 * 109.49578 * 58.66682 * 22 8 7 25 25 C 1.41455 * 107.00662 * 179.90607 * 4 3 2 26 26 N 1.30317 * 108.14090 * 0.35948 * 25 4 3 27 27 N 1.34666 * 126.40164 * 273.88632 * 3 2 1 28 28 C 1.46499 * 125.74270 * 0.02562 * 27 3 2 29 29 H 1.09000 * 109.47205 * 295.26313 * 1 2 3 30 30 H 1.09000 * 109.47435 * 55.26101 * 1 2 3 31 31 H 1.09001 * 109.46989 * 175.26230 * 1 2 3 32 32 H 0.97004 * 120.00142 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.49375 * 301.33804 * 10 8 7 34 34 H 1.08997 * 109.50027 * 61.43489 * 10 8 7 35 35 H 1.09002 * 109.58926 * 65.15043 * 11 10 8 36 36 H 1.09004 * 109.58697 * 185.57749 * 11 10 8 37 37 H 0.96997 * 120.00732 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.58519 * 66.18123 * 21 12 11 39 39 H 1.08998 * 109.59126 * 186.60516 * 21 12 11 40 40 H 1.08994 * 109.47294 * 59.99522 * 24 22 8 41 41 H 1.08997 * 109.47522 * 180.02562 * 24 22 8 42 42 H 1.09004 * 109.46954 * 299.99778 * 24 22 8 43 43 H 1.08009 * 125.93036 * 180.10081 * 25 4 3 44 44 H 1.08991 * 109.47528 * 94.47171 * 28 27 3 45 45 H 1.09001 * 109.46497 * 214.47248 * 28 27 3 46 46 H 1.09000 * 109.46803 * 334.46445 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4802 1.9094 1.1165 5 6 2.3617 1.4850 2.5181 6 8 1.8376 0.4210 2.7893 7 7 2.8327 2.2748 3.5034 8 6 2.7142 1.8519 4.9009 9 1 1.7817 1.3039 5.0367 10 6 3.8945 0.9471 5.2617 11 6 3.7490 0.4789 6.7131 12 7 3.6060 1.6578 7.5781 13 6 4.4332 1.8379 8.6545 14 1 5.4296 1.4214 8.6453 15 6 3.9910 2.5557 9.7573 16 7 2.7091 2.8162 9.9021 17 14 5.2154 3.1521 11.0357 18 1 5.7021 4.5044 10.6621 19 1 4.5540 3.2135 12.3638 20 1 6.3637 2.2124 11.0975 21 6 2.5589 2.6402 7.2662 22 6 2.7178 3.0841 5.8086 23 1 3.6602 3.6191 5.6919 24 6 1.5567 4.0039 5.4255 25 6 3.0617 3.1106 0.6473 26 7 2.9704 3.1249 -0.6526 27 7 2.3408 1.9514 -1.0814 28 6 2.0522 1.5943 -2.4726 29 1 -0.3633 0.4386 0.9294 30 1 -0.3634 0.5856 -0.8445 31 1 -0.3633 -1.0242 -0.0849 32 1 3.2496 3.1236 3.2872 33 1 3.9049 0.0813 4.5995 34 1 4.8259 1.5022 5.1502 35 1 2.8652 -0.1523 6.8065 36 1 4.6353 -0.0840 7.0061 37 1 2.4000 3.3181 10.6724 38 1 1.5781 2.1852 7.4047 39 1 2.6599 3.5033 7.9241 40 1 0.6147 3.4685 5.5438 41 1 1.5599 4.8815 6.0719 42 1 1.6686 4.3172 4.3875 43 1 3.5010 3.8837 1.2603 44 1 1.1032 2.0387 -2.7725 45 1 2.8482 1.9686 -3.1163 46 1 1.9907 0.5099 -2.5640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944346312.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:50 Heat of formation + Delta-G solvation = 5.587783 kcal Electronic energy + Delta-G solvation = -28036.537909 eV Core-core repulsion = 24156.271281 eV Total energy + Delta-G solvation = -3880.266627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62752 -40.71919 -39.21412 -38.92862 -36.05830 -34.52723 -33.76629 -33.43010 -31.45753 -30.72057 -28.52831 -27.73584 -27.51294 -26.67690 -24.41978 -23.20823 -22.48226 -22.02301 -21.28509 -20.79808 -19.35635 -18.68403 -17.81325 -17.47806 -17.26317 -16.77229 -16.38109 -15.87401 -15.74748 -15.61200 -15.50695 -15.30954 -14.86717 -14.70821 -14.55809 -14.48357 -14.12843 -13.60922 -13.58810 -13.43839 -13.14062 -12.91351 -12.88062 -12.82674 -12.54537 -12.42470 -12.38735 -11.99063 -11.80051 -11.69023 -11.51475 -11.34658 -11.18661 -10.82482 -10.53431 -10.50608 -10.02625 -9.64222 -8.67696 -7.84129 -5.31469 0.13553 1.07898 1.09311 1.50344 1.50768 1.60086 2.26248 2.39268 2.53579 2.61678 3.30586 3.39307 3.67480 3.82257 3.94428 4.02248 4.09699 4.15816 4.26908 4.31691 4.34474 4.36489 4.39846 4.57850 4.61873 4.62171 4.67165 4.77048 4.79982 4.90305 4.99327 5.05626 5.06115 5.13142 5.22475 5.33589 5.36456 5.39198 5.56342 5.64718 5.68778 5.80156 6.25538 6.38832 6.42230 6.73684 7.17435 7.40062 7.86690 8.39367 9.22086 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.028081 B = 0.002752 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.872847 B =10170.888227 C =10399.622112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.313 3.687 4 C -0.319 4.319 5 C 0.592 3.408 6 O -0.584 6.584 7 N -0.703 5.703 8 C 0.174 3.826 9 H 0.055 0.945 10 C -0.126 4.126 11 C 0.145 3.855 12 N -0.610 5.610 13 C -0.261 4.261 14 H 0.067 0.933 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.282 1.282 19 H -0.296 1.296 20 H -0.271 1.271 21 C 0.187 3.813 22 C -0.107 4.107 23 H 0.075 0.925 24 C -0.132 4.132 25 C 0.102 3.898 26 N -0.292 5.292 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.411 0.589 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.006 0.994 36 H 0.057 0.943 37 H 0.250 0.750 38 H -0.010 1.010 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.227 0.773 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 1.731 -26.364 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.138 3.862 4 C -0.335 4.335 5 C 0.380 3.620 6 O -0.465 6.465 7 N -0.353 5.353 8 C 0.069 3.931 9 H 0.073 0.927 10 C -0.166 4.166 11 C 0.019 3.981 12 N -0.333 5.333 13 C -0.391 4.391 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.582 5.582 17 Si 0.798 3.202 18 H -0.208 1.208 19 H -0.223 1.223 20 H -0.196 1.196 21 C 0.061 3.939 22 C -0.128 4.128 23 H 0.094 0.906 24 C -0.189 4.189 25 C -0.085 4.085 26 N -0.115 5.115 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.248 0.752 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.008 0.992 39 H 0.085 0.915 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.243 0.757 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.262 1.397 -27.228 27.458 hybrid contribution 0.139 -0.045 1.770 1.776 sum -3.124 1.352 -25.458 25.684 Atomic orbital electron populations 1.23317 0.75038 1.05848 1.01523 1.85980 1.23001 1.20461 1.93012 1.19489 0.94977 0.84677 0.87052 1.20070 1.20525 1.00457 0.92434 1.17290 0.77152 0.83222 0.84287 1.90777 1.46653 1.24481 1.84617 1.45707 1.61111 1.23306 1.05212 1.20609 0.97666 0.95225 0.79615 0.92653 1.22196 0.98605 0.99187 0.96605 1.20956 0.98158 0.89065 0.89927 1.44373 1.38318 1.21056 1.29600 1.19541 0.94199 1.31592 0.93806 0.91515 1.25812 0.97115 1.02696 0.98921 1.70161 1.13837 1.43946 1.30275 0.85229 0.78480 0.78518 0.77973 1.20832 1.22305 1.19570 1.20656 0.88553 0.92937 0.91752 1.21902 0.99936 0.95094 0.95854 0.90629 1.21670 0.96779 0.98688 1.01811 1.24389 0.95990 0.96266 0.91857 1.77195 1.19182 1.01410 1.13698 1.49261 1.44749 1.13738 1.07828 1.22380 1.04555 1.03389 0.75364 0.93991 0.90969 0.85676 0.75235 0.92437 0.91456 0.97610 0.92490 0.94045 0.99212 0.91465 0.94024 0.92485 0.90490 0.75715 0.88284 0.87341 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.13 113.37 1.26 1.87 16 2 O -0.32 -7.54 9.74 -79.48 -0.77 -8.32 16 3 C 0.31 7.46 6.98 84.44 0.59 8.05 16 4 C -0.32 -8.06 6.15 -20.03 -0.12 -8.18 16 5 C 0.59 18.32 7.76 86.52 0.67 18.99 16 6 O -0.58 -22.93 16.04 2.68 0.04 -22.89 16 7 N -0.70 -19.37 4.36 -446.15 -1.94 -21.31 16 8 C 0.17 6.07 1.88 45.02 0.08 6.16 16 9 H 0.06 2.27 7.57 -2.39 -0.02 2.25 16 10 C -0.13 -4.69 5.65 30.67 0.17 -4.51 16 11 C 0.15 6.48 6.52 86.36 0.56 7.04 16 12 N -0.61 -31.29 3.00 -699.10 -2.10 -33.39 16 13 C -0.26 -14.48 9.60 84.03 0.81 -13.67 16 14 H 0.07 3.61 7.87 -2.91 -0.02 3.59 16 15 C -0.05 -2.81 4.98 84.86 0.42 -2.39 16 16 N -0.94 -55.32 11.02 21.65 0.24 -55.09 16 17 Si 0.97 44.81 29.58 68.60 2.03 46.84 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.19 9.02 4.58 86.36 0.40 9.42 16 22 C -0.11 -3.85 2.46 -10.72 -0.03 -3.87 16 23 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 24 C -0.13 -3.91 9.03 71.98 0.65 -3.26 16 25 C 0.10 1.93 11.50 85.71 0.99 2.92 16 26 N -0.29 -5.89 12.48 -56.22 -0.70 -6.59 16 27 N -0.37 -6.86 3.99 -479.80 -1.91 -8.77 16 28 C 0.08 0.73 11.41 127.77 1.46 2.19 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 8.41 7.25 -92.71 -0.67 7.74 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.06 2.47 7.93 -2.38 -0.02 2.45 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H 0.07 3.63 5.95 -2.39 -0.01 3.61 16 40 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.77 7.36 -2.39 -0.02 1.76 16 43 H 0.23 2.48 7.50 -2.91 -0.02 2.46 16 44 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.10 0.70 8.02 -2.39 -0.02 0.68 16 Total: -1.00 -76.19 376.62 3.11 -73.08 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.31 Total: 15.69 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.91 Total: 20.75 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -6.42 Total: -125.15 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.73 Total: -31.20 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.19 3.11 -73.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944346312.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.668 kcal (2) G-P(sol) polarization free energy of solvation -76.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds