Wall clock time and date at job start Tue Mar 31 2020 14:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35349 * 117.00292 * 2 1 4 4 C 1.39006 * 126.40311 * 269.11724 * 3 2 1 5 5 C 1.46923 * 126.49588 * 0.02562 * 4 3 2 6 6 O 1.21671 * 119.99870 * 359.70488 * 5 4 3 7 7 N 1.34772 * 120.00035 * 179.71265 * 5 4 3 8 8 C 1.46503 * 120.00032 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.45817 * 325.02203 * 8 7 5 10 10 C 1.53039 * 109.45989 * 84.99904 * 8 7 5 11 11 C 1.53196 * 109.31317 * 58.63816 * 10 8 7 12 12 N 1.46929 * 108.77441 * 54.63534 * 11 10 8 13 13 C 1.36941 * 120.63169 * 126.40860 * 12 11 10 14 14 H 1.08004 * 119.99988 * 329.31687 * 13 12 11 15 15 C 1.38806 * 120.00223 * 149.31290 * 13 12 11 16 16 N 1.31614 * 120.00107 * 160.73903 * 15 13 12 17 17 Si 1.86799 * 119.99712 * 340.74069 * 15 13 12 18 18 H 1.48504 * 109.47284 * 92.35888 * 17 15 13 19 19 H 1.48501 * 109.47216 * 212.35755 * 17 15 13 20 20 H 1.48492 * 109.47355 * 332.35779 * 17 15 13 21 21 C 1.46925 * 118.73785 * 306.39170 * 12 11 10 22 22 C 1.53042 * 109.44694 * 205.05640 * 8 7 5 23 23 H 1.08999 * 109.49552 * 181.40041 * 22 8 7 24 24 C 1.53002 * 109.49547 * 61.30744 * 22 8 7 25 25 C 1.41456 * 107.00394 * 179.74302 * 4 3 2 26 26 N 1.30320 * 108.14229 * 0.23238 * 25 4 3 27 27 N 1.34658 * 126.40751 * 89.25330 * 3 2 1 28 28 C 1.46495 * 125.74359 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.47042 * 295.19995 * 1 2 3 30 30 H 1.08997 * 109.46963 * 55.19895 * 1 2 3 31 31 H 1.08999 * 109.47556 * 175.20398 * 1 2 3 32 32 H 0.97003 * 119.99775 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.49829 * 298.69044 * 10 8 7 34 34 H 1.09000 * 109.52266 * 178.60856 * 10 8 7 35 35 H 1.08994 * 109.58889 * 294.84853 * 11 10 8 36 36 H 1.08999 * 109.58699 * 174.42069 * 11 10 8 37 37 H 0.97005 * 120.00333 * 179.97438 * 16 15 13 38 38 H 1.09009 * 109.58009 * 173.39258 * 21 12 11 39 39 H 1.08993 * 109.58555 * 293.81863 * 21 12 11 40 40 H 1.09001 * 109.47070 * 300.15820 * 24 22 8 41 41 H 1.09000 * 109.47550 * 60.15479 * 24 22 8 42 42 H 1.08994 * 109.46954 * 180.16299 * 24 22 8 43 43 H 1.08002 * 125.92764 * 180.18907 * 25 4 3 44 44 H 1.09003 * 109.47049 * 274.83183 * 28 27 3 45 45 H 1.08999 * 109.46837 * 34.83521 * 28 27 3 46 46 H 1.09001 * 109.47112 * 154.83601 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4334 1.9331 -1.1187 5 6 2.2561 1.5386 -2.5228 6 8 1.7257 0.4778 -2.7943 7 7 2.6810 2.3517 -3.5100 8 6 2.5046 1.9581 -4.9101 9 1 2.6220 0.8783 -5.0012 10 6 1.1050 2.3604 -5.3805 11 6 0.9316 3.8739 -5.2184 12 7 2.0249 4.5536 -5.9267 13 6 1.7575 5.5203 -6.8590 14 1 0.8494 5.4722 -7.4418 15 6 2.6535 6.5622 -7.0550 16 7 2.6132 7.2642 -8.1676 17 14 3.9163 6.9679 -5.7398 18 1 5.1747 6.2298 -6.0173 19 1 4.1871 8.4280 -5.7470 20 1 3.3913 6.5685 -4.4094 21 6 3.4104 4.1766 -5.6154 22 6 3.5559 2.6598 -5.7730 23 1 3.4098 2.3869 -6.8181 24 6 4.9542 2.2315 -5.3233 25 6 3.0273 3.1280 -0.6490 26 7 2.9980 3.1109 0.6538 27 7 2.3938 1.9244 1.0837 28 6 2.1742 1.5324 2.4780 29 1 -0.3633 0.4376 0.9299 30 1 -0.3633 0.5865 -0.8438 31 1 -0.3634 -1.0240 -0.0859 32 1 3.1036 3.1976 -3.2935 33 1 0.3567 1.8423 -4.7807 34 1 0.9815 2.0902 -6.4292 35 1 0.9641 4.1342 -4.1605 36 1 -0.0246 4.1797 -5.6429 37 1 3.2391 7.9926 -8.3045 38 1 4.0896 4.6822 -6.3019 39 1 3.6450 4.4616 -4.5899 40 1 5.0989 2.5035 -4.2778 41 1 5.0574 1.1522 -5.4355 42 1 5.7026 2.7337 -5.9362 43 1 3.4351 3.9171 -1.2634 44 1 1.1702 1.8262 2.7842 45 1 2.2815 0.4518 2.5727 46 1 2.9076 2.0276 3.1145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944346313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:55 Heat of formation + Delta-G solvation = 36.136790 kcal Electronic energy + Delta-G solvation = -28771.942306 eV Core-core repulsion = 24893.000383 eV Total energy + Delta-G solvation = -3878.941923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74094 -39.67288 -38.34902 -37.58717 -34.27576 -33.68300 -32.29473 -31.86092 -30.49717 -29.81730 -27.69320 -27.02142 -26.11940 -25.19294 -23.16495 -22.30817 -21.31260 -20.89290 -20.34583 -18.79036 -18.49520 -17.04803 -16.80213 -16.65740 -15.92546 -15.49544 -14.99788 -14.89880 -14.86326 -14.65757 -14.17287 -13.91398 -13.78894 -13.51487 -13.39426 -13.26059 -13.04685 -12.85234 -12.69009 -12.20413 -12.19580 -11.87872 -11.53586 -11.48344 -11.30528 -11.13004 -10.64596 -10.49889 -10.46977 -10.21378 -10.02977 -9.70289 -9.65845 -9.62915 -9.50232 -8.90492 -8.60160 -8.55936 -6.92060 -5.95823 -3.34439 1.04277 1.86687 2.00339 3.23071 3.30120 3.45710 3.48119 3.50868 3.61965 4.18324 4.51548 4.70813 4.72524 4.79195 4.91760 4.95390 5.00627 5.01605 5.06898 5.15411 5.33246 5.33767 5.39639 5.49070 5.54109 5.74859 5.83276 5.92222 5.96945 6.03096 6.09993 6.16079 6.23515 6.35478 6.44933 6.47475 6.65771 6.70234 6.72676 6.83519 7.00685 7.09291 7.25540 7.84657 7.99237 8.34394 8.54196 8.94562 9.71300 10.10562 11.20373 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003869 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.561709 B = 7236.035685 C = 7812.051216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.297 6.297 3 C 0.318 3.682 4 C -0.292 4.292 5 C 0.594 3.406 6 O -0.547 6.547 7 N -0.711 5.711 8 C 0.163 3.837 9 H 0.080 0.920 10 C -0.146 4.146 11 C 0.150 3.850 12 N -0.605 5.605 13 C -0.260 4.260 14 H 0.084 0.916 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.882 3.118 18 H -0.287 1.287 19 H -0.303 1.303 20 H -0.270 1.270 21 C 0.134 3.866 22 C -0.119 4.119 23 H 0.088 0.912 24 C -0.144 4.144 25 C 0.093 3.907 26 N -0.278 5.278 27 N -0.372 5.372 28 C 0.094 3.906 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.398 0.602 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.061 0.939 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.195 0.805 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 -13.230 19.149 23.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.206 6.206 3 C 0.144 3.856 4 C -0.308 4.308 5 C 0.381 3.619 6 O -0.425 6.425 7 N -0.363 5.363 8 C 0.059 3.941 9 H 0.098 0.902 10 C -0.186 4.186 11 C 0.025 3.975 12 N -0.328 5.328 13 C -0.388 4.388 14 H 0.101 0.899 15 C -0.174 4.174 16 N -0.551 5.551 17 Si 0.712 3.288 18 H -0.215 1.215 19 H -0.232 1.232 20 H -0.195 1.195 21 C 0.008 3.992 22 C -0.140 4.140 23 H 0.106 0.894 24 C -0.202 4.202 25 C -0.094 4.094 26 N -0.101 5.101 27 N -0.161 5.161 28 C -0.046 4.046 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.233 0.767 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.211 0.789 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.632 -13.499 20.007 24.143 hybrid contribution 0.630 0.517 0.177 0.834 sum -0.002 -12.982 20.183 23.998 Atomic orbital electron populations 1.23115 0.76626 1.04560 1.01039 1.85983 1.21402 1.20316 1.92913 1.19280 0.95067 0.84907 0.86321 1.20164 1.18295 0.98678 0.93638 1.16911 0.78068 0.83629 0.83290 1.90770 1.44280 1.23365 1.84127 1.45910 1.61567 1.22665 1.06109 1.20871 0.95327 0.98878 0.79067 0.90243 1.22372 0.95998 0.98956 1.01268 1.20898 0.92114 0.89790 0.94739 1.44346 0.99504 1.43022 1.45939 1.18908 1.08461 1.00173 1.11281 0.89867 1.25359 0.98538 0.96461 0.97007 1.69825 1.38522 1.22931 1.23861 0.86931 0.81388 0.76460 0.84016 1.21469 1.23150 1.19537 1.21345 0.88065 0.91888 0.97911 1.21962 0.93518 0.98383 1.00099 0.89371 1.21785 0.96698 1.00720 1.01032 1.23982 0.96743 0.96841 0.91872 1.77251 1.19696 0.99758 1.13400 1.48951 1.46133 1.14475 1.06538 1.21972 1.03355 1.01933 0.77390 0.93671 0.91947 0.87616 0.76676 0.92181 0.91055 0.96053 0.92046 0.92768 0.90706 0.96317 0.93045 0.92953 0.92573 0.78865 0.90447 0.89103 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.13 101.05 1.12 1.50 16 2 O -0.30 -3.69 9.83 -24.99 -0.25 -3.93 16 3 C 0.32 4.14 6.99 -16.03 -0.11 4.03 16 4 C -0.29 -4.12 6.15 -104.87 -0.64 -4.77 16 5 C 0.59 9.42 7.76 -12.75 -0.10 9.32 16 6 O -0.55 -10.03 16.04 -2.04 -0.03 -10.06 16 7 N -0.71 -10.77 3.58 -55.00 -0.20 -10.97 16 8 C 0.16 2.62 2.21 -67.89 -0.15 2.47 16 9 H 0.08 1.30 7.57 -51.93 -0.39 0.91 16 10 C -0.15 -2.49 5.77 -26.61 -0.15 -2.64 16 11 C 0.15 2.93 6.26 -3.71 -0.02 2.91 16 12 N -0.60 -13.74 2.72 -172.32 -0.47 -14.21 16 13 C -0.26 -7.09 10.01 -15.06 -0.15 -7.24 16 14 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 15 C 0.03 0.72 5.23 -17.44 -0.09 0.63 16 16 N -0.91 -27.48 13.97 55.49 0.78 -26.70 16 17 Si 0.88 21.63 24.38 -169.99 -4.14 17.49 16 18 H -0.29 -6.76 6.66 56.52 0.38 -6.38 16 19 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 20 H -0.27 -6.36 6.70 56.52 0.38 -5.98 16 21 C 0.13 2.71 3.19 -3.71 -0.01 2.70 16 22 C -0.12 -1.99 2.67 -90.50 -0.24 -2.23 16 23 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 24 C -0.14 -2.06 9.06 37.16 0.34 -1.72 16 25 C 0.09 1.16 11.50 -16.97 -0.20 0.97 16 26 N -0.28 -3.54 12.48 30.88 0.39 -3.15 16 27 N -0.37 -4.18 3.99 -67.67 -0.27 -4.45 16 28 C 0.09 0.61 11.38 59.84 0.68 1.29 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 5.74 5.67 -40.82 -0.23 5.51 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 36 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 1.70 4.83 -51.92 -0.25 1.44 16 39 H 0.02 0.37 5.54 -51.93 -0.29 0.08 16 40 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.19 1.99 7.50 -52.49 -0.39 1.59 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.94 367.01 -5.42 -39.35 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.02 Total: 3.90 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 0.27 Total: 7.21 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.22 Total: -59.49 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.28 Total: -14.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.94 -5.42 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944346313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.492 kcal (2) G-P(sol) polarization free energy of solvation -33.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds