Wall clock time and date at job start Tue Mar 31 2020 14:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35349 * 117.00292 * 2 1 4 4 C 1.39006 * 126.40311 * 269.11724 * 3 2 1 5 5 C 1.46923 * 126.49588 * 0.02562 * 4 3 2 6 6 O 1.21671 * 119.99870 * 359.70488 * 5 4 3 7 7 N 1.34772 * 120.00035 * 179.71265 * 5 4 3 8 8 C 1.46503 * 120.00032 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.45817 * 325.02203 * 8 7 5 10 10 C 1.53039 * 109.45989 * 84.99904 * 8 7 5 11 11 C 1.53196 * 109.31317 * 58.63816 * 10 8 7 12 12 N 1.46929 * 108.77441 * 54.63534 * 11 10 8 13 13 C 1.36941 * 120.63169 * 126.40860 * 12 11 10 14 14 H 1.08004 * 119.99988 * 329.31687 * 13 12 11 15 15 C 1.38806 * 120.00223 * 149.31290 * 13 12 11 16 16 N 1.31614 * 120.00107 * 160.73903 * 15 13 12 17 17 Si 1.86799 * 119.99712 * 340.74069 * 15 13 12 18 18 H 1.48504 * 109.47284 * 92.35888 * 17 15 13 19 19 H 1.48501 * 109.47216 * 212.35755 * 17 15 13 20 20 H 1.48492 * 109.47355 * 332.35779 * 17 15 13 21 21 C 1.46925 * 118.73785 * 306.39170 * 12 11 10 22 22 C 1.53042 * 109.44694 * 205.05640 * 8 7 5 23 23 H 1.08999 * 109.49552 * 181.40041 * 22 8 7 24 24 C 1.53002 * 109.49547 * 61.30744 * 22 8 7 25 25 C 1.41456 * 107.00394 * 179.74302 * 4 3 2 26 26 N 1.30320 * 108.14229 * 0.23238 * 25 4 3 27 27 N 1.34658 * 126.40751 * 89.25330 * 3 2 1 28 28 C 1.46495 * 125.74359 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.47042 * 295.19995 * 1 2 3 30 30 H 1.08997 * 109.46963 * 55.19895 * 1 2 3 31 31 H 1.08999 * 109.47556 * 175.20398 * 1 2 3 32 32 H 0.97003 * 119.99775 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.49829 * 298.69044 * 10 8 7 34 34 H 1.09000 * 109.52266 * 178.60856 * 10 8 7 35 35 H 1.08994 * 109.58889 * 294.84853 * 11 10 8 36 36 H 1.08999 * 109.58699 * 174.42069 * 11 10 8 37 37 H 0.97005 * 120.00333 * 179.97438 * 16 15 13 38 38 H 1.09009 * 109.58009 * 173.39258 * 21 12 11 39 39 H 1.08993 * 109.58555 * 293.81863 * 21 12 11 40 40 H 1.09001 * 109.47070 * 300.15820 * 24 22 8 41 41 H 1.09000 * 109.47550 * 60.15479 * 24 22 8 42 42 H 1.08994 * 109.46954 * 180.16299 * 24 22 8 43 43 H 1.08002 * 125.92764 * 180.18907 * 25 4 3 44 44 H 1.09003 * 109.47049 * 274.83183 * 28 27 3 45 45 H 1.08999 * 109.46837 * 34.83521 * 28 27 3 46 46 H 1.09001 * 109.47112 * 154.83601 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.4334 1.9331 -1.1187 5 6 2.2561 1.5386 -2.5228 6 8 1.7257 0.4778 -2.7943 7 7 2.6810 2.3517 -3.5100 8 6 2.5046 1.9581 -4.9101 9 1 2.6220 0.8783 -5.0012 10 6 1.1050 2.3604 -5.3805 11 6 0.9316 3.8739 -5.2184 12 7 2.0249 4.5536 -5.9267 13 6 1.7575 5.5203 -6.8590 14 1 0.8494 5.4722 -7.4418 15 6 2.6535 6.5622 -7.0550 16 7 2.6132 7.2642 -8.1676 17 14 3.9163 6.9679 -5.7398 18 1 5.1747 6.2298 -6.0173 19 1 4.1871 8.4280 -5.7470 20 1 3.3913 6.5685 -4.4094 21 6 3.4104 4.1766 -5.6154 22 6 3.5559 2.6598 -5.7730 23 1 3.4098 2.3869 -6.8181 24 6 4.9542 2.2315 -5.3233 25 6 3.0273 3.1280 -0.6490 26 7 2.9980 3.1109 0.6538 27 7 2.3938 1.9244 1.0837 28 6 2.1742 1.5324 2.4780 29 1 -0.3633 0.4376 0.9299 30 1 -0.3633 0.5865 -0.8438 31 1 -0.3634 -1.0240 -0.0859 32 1 3.1036 3.1976 -3.2935 33 1 0.3567 1.8423 -4.7807 34 1 0.9815 2.0902 -6.4292 35 1 0.9641 4.1342 -4.1605 36 1 -0.0246 4.1797 -5.6429 37 1 3.2391 7.9926 -8.3045 38 1 4.0896 4.6822 -6.3019 39 1 3.6450 4.4616 -4.5899 40 1 5.0989 2.5035 -4.2778 41 1 5.0574 1.1522 -5.4355 42 1 5.7026 2.7337 -5.9362 43 1 3.4351 3.9171 -1.2634 44 1 1.1702 1.8262 2.7842 45 1 2.2815 0.4518 2.5727 46 1 2.9076 2.0276 3.1145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944346313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:53 Heat of formation + Delta-G solvation = 11.699963 kcal Electronic energy + Delta-G solvation = -28773.001966 eV Core-core repulsion = 24893.000383 eV Total energy + Delta-G solvation = -3880.001583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.65271 -40.99286 -39.22486 -38.98432 -35.92302 -34.53749 -33.73176 -33.56893 -31.98580 -30.86827 -28.52917 -27.74411 -27.54061 -26.89865 -24.48037 -23.68399 -22.45817 -22.21582 -21.42132 -20.24407 -19.48099 -18.73410 -18.01909 -17.51107 -17.18194 -16.86258 -16.35153 -16.08431 -15.83498 -15.71585 -15.64123 -15.19587 -14.98924 -14.82702 -14.72874 -14.54809 -14.33596 -13.83512 -13.61266 -13.57752 -13.45942 -13.02636 -12.95900 -12.90224 -12.56831 -12.42566 -12.27360 -12.06841 -11.90503 -11.57080 -11.49241 -11.34129 -11.24237 -10.85861 -10.61451 -10.52812 -10.05251 -9.67495 -8.83165 -8.12786 -5.48277 0.12500 1.03760 1.07536 1.35366 1.46471 1.55726 2.29046 2.35744 2.46671 2.61253 3.09964 3.35379 3.38509 3.74372 3.91820 3.99933 4.01699 4.08724 4.19962 4.30218 4.31671 4.33841 4.34972 4.45361 4.55870 4.59104 4.61222 4.68007 4.69411 4.72007 4.90771 4.94629 5.04902 5.07462 5.07987 5.17945 5.26348 5.30357 5.34400 5.43125 5.66718 5.93079 6.17519 6.24017 6.36637 6.66708 6.96436 7.35057 7.65449 8.06902 9.07318 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003869 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.561709 B = 7236.035685 C = 7812.051216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.311 6.311 3 C 0.317 3.683 4 C -0.320 4.320 5 C 0.597 3.403 6 O -0.577 6.577 7 N -0.705 5.705 8 C 0.171 3.829 9 H 0.083 0.917 10 C -0.136 4.136 11 C 0.151 3.849 12 N -0.615 5.615 13 C -0.251 4.251 14 H 0.045 0.955 15 C -0.033 4.033 16 N -0.960 5.960 17 Si 0.945 3.055 18 H -0.269 1.269 19 H -0.315 1.315 20 H -0.250 1.250 21 C 0.130 3.870 22 C -0.109 4.109 23 H 0.077 0.923 24 C -0.139 4.139 25 C 0.095 3.905 26 N -0.293 5.293 27 N -0.365 5.365 28 C 0.083 3.917 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.125 0.875 32 H 0.403 0.597 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.213 0.787 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.429 -14.537 22.315 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.221 6.221 3 C 0.142 3.858 4 C -0.336 4.336 5 C 0.386 3.614 6 O -0.458 6.458 7 N -0.357 5.357 8 C 0.066 3.934 9 H 0.101 0.899 10 C -0.176 4.176 11 C 0.026 3.974 12 N -0.340 5.340 13 C -0.380 4.380 14 H 0.062 0.938 15 C -0.228 4.228 16 N -0.606 5.606 17 Si 0.773 3.227 18 H -0.195 1.195 19 H -0.244 1.244 20 H -0.173 1.173 21 C 0.005 3.995 22 C -0.130 4.130 23 H 0.095 0.905 24 C -0.197 4.197 25 C -0.092 4.092 26 N -0.116 5.116 27 N -0.154 5.154 28 C -0.056 4.056 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.239 0.761 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.229 0.771 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.405 -14.838 23.235 27.571 hybrid contribution 0.173 0.826 -0.771 1.143 sum 0.579 -14.012 22.464 26.481 Atomic orbital electron populations 1.23312 0.74970 1.05769 1.01558 1.85952 1.22966 1.20130 1.93024 1.19392 0.94724 0.84934 0.86776 1.20105 1.20423 1.00063 0.92972 1.17116 0.77236 0.83058 0.83987 1.90749 1.45711 1.24638 1.84654 1.45792 1.61554 1.22826 1.05493 1.20708 0.94196 0.98875 0.79599 0.89918 1.22243 0.97175 0.96968 1.01166 1.20958 0.90664 0.90999 0.94747 1.44409 1.01451 1.42470 1.45644 1.18802 1.06870 1.01200 1.11149 0.93756 1.26015 1.01428 0.96542 0.98803 1.69973 1.40462 1.24099 1.26042 0.85901 0.79572 0.75412 0.81801 1.19533 1.24442 1.17334 1.21425 0.85920 0.94033 0.98084 1.21814 0.95567 0.95754 0.99865 0.90465 1.21748 0.94608 1.01697 1.01662 1.24241 0.96254 0.96687 0.91975 1.77217 1.20210 1.00639 1.13496 1.49270 1.44806 1.13577 1.07711 1.22391 1.04969 1.03138 0.75145 0.91045 0.93935 0.85699 0.76051 0.91532 0.91639 0.94807 0.93303 0.93018 0.92978 0.94368 0.91868 0.91492 0.92333 0.77097 0.88452 0.87621 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.13 113.37 1.26 1.87 16 2 O -0.31 -7.12 9.83 -79.45 -0.78 -7.91 16 3 C 0.32 7.62 6.99 84.44 0.59 8.21 16 4 C -0.32 -8.41 6.15 -20.03 -0.12 -8.53 16 5 C 0.60 17.87 7.76 86.52 0.67 18.54 16 6 O -0.58 -20.42 16.04 2.68 0.04 -20.38 16 7 N -0.71 -19.72 3.58 -446.15 -1.60 -21.32 16 8 C 0.17 5.18 2.21 45.02 0.10 5.28 16 9 H 0.08 2.54 7.57 -2.39 -0.02 2.53 16 10 C -0.14 -4.49 5.77 30.67 0.18 -4.31 16 11 C 0.15 5.80 6.26 86.36 0.54 6.34 16 12 N -0.62 -27.70 2.72 -699.10 -1.90 -29.60 16 13 C -0.25 -13.99 10.01 84.03 0.84 -13.15 16 14 H 0.04 2.76 8.06 -2.91 -0.02 2.73 16 15 C -0.03 -1.90 5.23 84.86 0.44 -1.46 16 16 N -0.96 -59.92 13.97 21.65 0.30 -59.62 16 17 Si 0.95 44.41 24.38 68.60 1.67 46.08 16 18 H -0.27 -11.78 6.66 99.48 0.66 -11.11 16 19 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16 20 H -0.25 -10.74 6.70 99.48 0.67 -10.08 16 21 C 0.13 5.04 3.19 86.36 0.28 5.32 16 22 C -0.11 -3.45 2.67 -10.72 -0.03 -3.48 16 23 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 24 C -0.14 -3.55 9.06 71.98 0.65 -2.90 16 25 C 0.10 2.15 11.50 85.71 0.99 3.14 16 26 N -0.29 -6.71 12.48 -56.23 -0.70 -7.41 16 27 N -0.36 -7.27 3.99 -479.80 -1.91 -9.18 16 28 C 0.08 0.81 11.38 127.77 1.45 2.26 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.40 10.41 5.67 -92.71 -0.53 9.88 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.03 1.23 7.74 -2.39 -0.02 1.21 16 36 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 37 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 38 H 0.05 2.27 4.83 -2.38 -0.01 2.26 16 39 H 0.04 1.35 5.54 -2.39 -0.01 1.34 16 40 H 0.06 1.47 7.53 -2.39 -0.02 1.45 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.21 3.70 7.50 -2.91 -0.02 3.68 16 44 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -74.63 367.01 3.34 -71.29 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.38 Total: 20.92 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 7.84 Total: 17.13 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -5.81 Total: -127.14 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.74 Total: -28.28 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.08 kcal Total: -74.63 3.34 -71.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944346313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.985 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds