Wall clock time and date at job start Tue Mar 31 2020 14:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35348 * 116.99967 * 2 1 4 4 C 1.38998 * 126.40439 * 93.66286 * 3 2 1 5 5 C 1.46920 * 126.49861 * 359.97438 * 4 3 2 6 6 O 1.21667 * 120.00155 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00133 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00027 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46196 * 35.02962 * 8 7 5 10 10 C 1.53045 * 109.46132 * 275.06991 * 8 7 5 11 11 C 1.53189 * 109.31349 * 178.61336 * 10 8 7 12 12 N 1.46932 * 108.77782 * 54.63713 * 11 10 8 13 13 C 1.36932 * 120.63287 * 126.38492 * 12 11 10 14 14 H 1.07995 * 120.00524 * 333.34464 * 13 12 11 15 15 C 1.38813 * 119.99811 * 153.33966 * 13 12 11 16 16 N 1.31619 * 119.99991 * 159.01025 * 15 13 12 17 17 Si 1.86809 * 120.00016 * 339.00652 * 15 13 12 18 18 H 1.48502 * 109.46806 * 94.64063 * 17 15 13 19 19 H 1.48494 * 109.47197 * 214.63903 * 17 15 13 20 20 H 1.48498 * 109.46857 * 334.64020 * 17 15 13 21 21 C 1.46937 * 118.75855 * 306.41299 * 12 11 10 22 22 C 1.53042 * 109.46304 * 155.00461 * 8 7 5 23 23 H 1.09004 * 109.49860 * 61.39548 * 22 8 7 24 24 C 1.53001 * 109.49217 * 301.33977 * 22 8 7 25 25 C 1.41467 * 107.00537 * 180.25797 * 4 3 2 26 26 N 1.30310 * 108.13493 * 359.55890 * 25 4 3 27 27 N 1.34660 * 126.40696 * 273.65664 * 3 2 1 28 28 C 1.46498 * 125.74051 * 359.97438 * 27 3 2 29 29 H 1.09003 * 109.47195 * 304.90330 * 1 2 3 30 30 H 1.09002 * 109.47071 * 64.90090 * 1 2 3 31 31 H 1.08997 * 109.47406 * 184.90051 * 1 2 3 32 32 H 0.96997 * 120.00068 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.49816 * 298.56673 * 10 8 7 34 34 H 1.08996 * 109.49645 * 58.63043 * 10 8 7 35 35 H 1.09000 * 109.58712 * 174.42011 * 11 10 8 36 36 H 1.09006 * 109.59067 * 294.85257 * 11 10 8 37 37 H 0.97000 * 119.99791 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.56008 * 293.77865 * 21 12 11 39 39 H 1.09004 * 109.61096 * 173.35687 * 21 12 11 40 40 H 1.09000 * 109.47747 * 60.06598 * 24 22 8 41 41 H 1.08999 * 109.47134 * 300.05542 * 24 22 8 42 42 H 1.09007 * 109.47093 * 180.02562 * 24 22 8 43 43 H 1.08002 * 125.93083 * 179.73279 * 25 4 3 44 44 H 1.08998 * 109.47669 * 94.40315 * 28 27 3 45 45 H 1.09002 * 109.47000 * 214.40608 * 28 27 3 46 46 H 1.09005 * 109.47052 * 334.39841 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4816 1.9085 1.1164 5 6 2.3650 1.4832 2.5179 6 8 1.8412 0.4191 2.7891 7 7 2.8382 2.2718 3.5031 8 6 2.7214 1.8479 4.9005 9 1 2.8367 0.7657 4.9626 10 6 1.3458 2.2455 5.4407 11 6 1.2142 1.7702 6.8910 12 7 2.3435 2.3007 7.6669 13 6 2.1271 3.0123 8.8167 14 1 1.2029 3.5547 8.9502 15 6 3.0957 3.0363 9.8107 16 7 3.1006 4.0051 10.7016 17 14 4.3922 1.6934 9.8841 18 1 5.6122 2.1436 9.1671 19 1 4.7286 1.4071 11.3019 20 1 3.8664 0.4621 9.2418 21 6 3.7098 2.0541 7.1857 22 6 3.8131 2.5255 5.7319 23 1 3.6837 3.6071 5.6900 24 6 5.1870 2.1536 5.1708 25 6 3.0552 3.1138 0.6479 26 7 2.9735 3.1233 -0.6526 27 7 2.3447 1.9495 -1.0816 28 6 2.0620 1.5894 -2.4732 29 1 -0.3634 0.5880 0.8428 30 1 -0.3633 0.4359 -0.9306 31 1 -0.3634 -1.0239 0.0878 32 1 3.2555 3.1203 3.2869 33 1 1.2392 3.3296 5.4021 34 1 0.5685 1.7817 4.8334 35 1 0.2778 2.1362 7.3120 36 1 1.2299 0.6807 6.9214 37 1 3.7772 4.0216 11.3964 38 1 3.9291 0.9878 7.2406 39 1 4.4197 2.6073 7.8006 40 1 5.2597 2.4882 4.1360 41 1 5.3160 1.0721 5.2129 42 1 5.9643 2.6361 5.7635 43 1 3.4884 3.8900 1.2614 44 1 1.1133 2.0316 -2.7775 45 1 2.8598 1.9640 -3.1146 46 1 2.0027 0.5047 -2.5630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944346314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:58 Heat of formation + Delta-G solvation = 35.607171 kcal Electronic energy + Delta-G solvation = -28147.606231 eV Core-core repulsion = 24268.641342 eV Total energy + Delta-G solvation = -3878.964889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82749 -39.52996 -38.42361 -37.65445 -34.56363 -33.75660 -32.34617 -31.91998 -30.47900 -29.80473 -27.78144 -27.09794 -26.16604 -24.99255 -23.14789 -22.24778 -21.33324 -20.77677 -20.17260 -19.64362 -18.45013 -17.11049 -16.78331 -16.58597 -16.19623 -15.66180 -15.04953 -14.96648 -14.80624 -14.56493 -14.26293 -13.97816 -13.81212 -13.57834 -13.24577 -13.18581 -13.13366 -12.94359 -12.51955 -12.32388 -12.26155 -11.85504 -11.63005 -11.58816 -11.41061 -10.83411 -10.62518 -10.57307 -10.43953 -10.23875 -10.00409 -9.79950 -9.77953 -9.60820 -9.41676 -8.97260 -8.61308 -8.60022 -6.96414 -5.92671 -3.27437 0.96882 1.78016 1.90639 3.15130 3.34127 3.40862 3.51667 3.54505 3.55191 4.08285 4.55370 4.61343 4.65433 4.71069 4.83116 4.93576 4.94340 4.95633 5.02399 5.10874 5.26971 5.34725 5.41117 5.45772 5.50672 5.73759 5.78154 5.94736 5.97093 6.05874 6.10198 6.19510 6.20062 6.38737 6.44202 6.46491 6.65179 6.68601 6.75754 6.86574 6.98668 7.02312 7.15753 7.76841 7.98136 8.35121 8.48037 8.96528 9.74622 10.12367 11.23297 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.002972 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.163594 B = 9417.550172 C = 9765.609811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.318 3.682 4 C -0.292 4.292 5 C 0.592 3.408 6 O -0.541 6.541 7 N -0.718 5.718 8 C 0.160 3.840 9 H 0.083 0.917 10 C -0.141 4.141 11 C 0.151 3.849 12 N -0.607 5.607 13 C -0.258 4.258 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.909 5.909 17 Si 0.879 3.121 18 H -0.288 1.288 19 H -0.304 1.304 20 H -0.269 1.269 21 C 0.136 3.864 22 C -0.115 4.115 23 H 0.078 0.922 24 C -0.145 4.145 25 C 0.092 3.908 26 N -0.280 5.280 27 N -0.372 5.372 28 C 0.093 3.907 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.394 0.606 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.262 0.738 38 H 0.028 0.972 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.196 0.804 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 -3.947 -26.614 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.205 6.205 3 C 0.145 3.855 4 C -0.308 4.308 5 C 0.379 3.621 6 O -0.419 6.419 7 N -0.367 5.367 8 C 0.056 3.944 9 H 0.101 0.899 10 C -0.182 4.182 11 C 0.024 3.976 12 N -0.330 5.330 13 C -0.386 4.386 14 H 0.104 0.896 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.709 3.291 18 H -0.216 1.216 19 H -0.232 1.232 20 H -0.194 1.194 21 C 0.010 3.990 22 C -0.136 4.136 23 H 0.096 0.904 24 C -0.203 4.203 25 C -0.096 4.096 26 N -0.102 5.102 27 N -0.162 5.162 28 C -0.047 4.047 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.228 0.772 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.212 0.788 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.972 -4.306 -27.406 27.812 hybrid contribution 0.702 -0.555 0.591 1.073 sum -1.270 -4.861 -26.815 27.281 Atomic orbital electron populations 1.23132 0.76611 1.04722 1.00977 1.86018 1.21404 1.20233 1.92849 1.19339 0.95108 0.84676 0.86371 1.20166 1.18389 0.98614 0.93621 1.16947 0.78155 0.83810 0.83225 1.90801 1.44405 1.22746 1.83931 1.45970 1.61295 1.22868 1.06617 1.20976 0.95468 0.99799 0.78116 0.89858 1.22390 0.96012 1.01441 0.98317 1.20899 0.91671 0.95815 0.89171 1.44411 0.99685 1.63026 1.25860 1.18934 1.05334 1.22209 0.92122 0.89623 1.25262 0.98338 0.97839 0.96193 1.69841 1.36024 1.30824 1.18503 0.86997 0.81667 0.84652 0.75737 1.21607 1.23203 1.19375 1.21365 0.88278 0.97887 0.91502 1.21977 0.93331 1.01025 0.97278 0.90366 1.21795 0.96894 1.01458 1.00141 1.23956 0.97073 0.96631 0.91892 1.77217 1.18770 1.00790 1.13438 1.48961 1.45791 1.14618 1.06813 1.21987 1.03092 1.02214 0.77455 0.92018 0.93623 0.87495 0.77177 0.91850 0.92242 0.91668 0.95706 0.92813 0.95445 0.90630 0.93031 0.92917 0.92566 0.78763 0.90308 0.88647 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.13 101.05 1.12 1.46 16 2 O -0.30 -3.51 9.74 -24.98 -0.24 -3.75 16 3 C 0.32 3.83 6.98 -16.03 -0.11 3.72 16 4 C -0.29 -3.70 6.15 -104.87 -0.64 -4.35 16 5 C 0.59 8.83 7.76 -12.75 -0.10 8.73 16 6 O -0.54 -9.92 16.04 -2.03 -0.03 -9.96 16 7 N -0.72 -9.67 4.36 -55.00 -0.24 -9.91 16 8 C 0.16 2.61 1.88 -67.89 -0.13 2.48 16 9 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 10 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 11 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 12 N -0.61 -14.37 2.78 -172.31 -0.48 -14.85 16 13 C -0.26 -7.17 10.04 -15.06 -0.15 -7.32 16 14 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 15 C 0.02 0.65 5.23 -17.43 -0.09 0.55 16 16 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 17 Si 0.88 22.38 24.35 -169.99 -4.14 18.24 16 18 H -0.29 -7.03 6.68 56.52 0.38 -6.65 16 19 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 20 H -0.27 -6.77 6.52 56.52 0.37 -6.40 16 21 C 0.14 2.93 3.48 -3.71 -0.01 2.92 16 22 C -0.12 -1.95 2.46 -90.50 -0.22 -2.18 16 23 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 24 C -0.14 -2.08 9.02 37.16 0.34 -1.75 16 25 C 0.09 0.94 11.50 -16.97 -0.20 0.74 16 26 N -0.28 -3.06 12.47 30.88 0.39 -2.68 16 27 N -0.37 -3.75 3.99 -67.67 -0.27 -4.02 16 28 C 0.09 0.51 11.41 59.85 0.68 1.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.39 4.22 7.26 -40.82 -0.30 3.92 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.03 0.60 7.03 -51.93 -0.36 0.24 16 39 H 0.08 1.78 4.47 -51.93 -0.23 1.55 16 40 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 43 H 0.20 1.32 7.50 -52.49 -0.39 0.93 16 44 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.40 8.03 -51.93 -0.42 -0.02 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -35.35 370.28 -5.51 -40.85 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.16 Total: 0.86 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.31 Total: 6.64 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.17 Total: -58.47 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.28 Total: -13.71 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.35 -5.51 -40.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944346314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.460 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds