Wall clock time and date at job start Tue Mar 31 2020 14:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35348 * 116.99967 * 2 1 4 4 C 1.38998 * 126.40439 * 93.66286 * 3 2 1 5 5 C 1.46920 * 126.49861 * 359.97438 * 4 3 2 6 6 O 1.21667 * 120.00155 * 359.97438 * 5 4 3 7 7 N 1.34774 * 120.00133 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00027 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46196 * 35.02962 * 8 7 5 10 10 C 1.53045 * 109.46132 * 275.06991 * 8 7 5 11 11 C 1.53189 * 109.31349 * 178.61336 * 10 8 7 12 12 N 1.46932 * 108.77782 * 54.63713 * 11 10 8 13 13 C 1.36932 * 120.63287 * 126.38492 * 12 11 10 14 14 H 1.07995 * 120.00524 * 333.34464 * 13 12 11 15 15 C 1.38813 * 119.99811 * 153.33966 * 13 12 11 16 16 N 1.31619 * 119.99991 * 159.01025 * 15 13 12 17 17 Si 1.86809 * 120.00016 * 339.00652 * 15 13 12 18 18 H 1.48502 * 109.46806 * 94.64063 * 17 15 13 19 19 H 1.48494 * 109.47197 * 214.63903 * 17 15 13 20 20 H 1.48498 * 109.46857 * 334.64020 * 17 15 13 21 21 C 1.46937 * 118.75855 * 306.41299 * 12 11 10 22 22 C 1.53042 * 109.46304 * 155.00461 * 8 7 5 23 23 H 1.09004 * 109.49860 * 61.39548 * 22 8 7 24 24 C 1.53001 * 109.49217 * 301.33977 * 22 8 7 25 25 C 1.41467 * 107.00537 * 180.25797 * 4 3 2 26 26 N 1.30310 * 108.13493 * 359.55890 * 25 4 3 27 27 N 1.34660 * 126.40696 * 273.65664 * 3 2 1 28 28 C 1.46498 * 125.74051 * 359.97438 * 27 3 2 29 29 H 1.09003 * 109.47195 * 304.90330 * 1 2 3 30 30 H 1.09002 * 109.47071 * 64.90090 * 1 2 3 31 31 H 1.08997 * 109.47406 * 184.90051 * 1 2 3 32 32 H 0.96997 * 120.00068 * 0.02562 * 7 5 4 33 33 H 1.08997 * 109.49816 * 298.56673 * 10 8 7 34 34 H 1.08996 * 109.49645 * 58.63043 * 10 8 7 35 35 H 1.09000 * 109.58712 * 174.42011 * 11 10 8 36 36 H 1.09006 * 109.59067 * 294.85257 * 11 10 8 37 37 H 0.97000 * 119.99791 * 179.97438 * 16 15 13 38 38 H 1.08993 * 109.56008 * 293.77865 * 21 12 11 39 39 H 1.09004 * 109.61096 * 173.35687 * 21 12 11 40 40 H 1.09000 * 109.47747 * 60.06598 * 24 22 8 41 41 H 1.08999 * 109.47134 * 300.05542 * 24 22 8 42 42 H 1.09007 * 109.47093 * 180.02562 * 24 22 8 43 43 H 1.08002 * 125.93083 * 179.73279 * 25 4 3 44 44 H 1.08998 * 109.47669 * 94.40315 * 28 27 3 45 45 H 1.09002 * 109.47000 * 214.40608 * 28 27 3 46 46 H 1.09005 * 109.47052 * 334.39841 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4816 1.9085 1.1164 5 6 2.3650 1.4832 2.5179 6 8 1.8412 0.4191 2.7891 7 7 2.8382 2.2718 3.5031 8 6 2.7214 1.8479 4.9005 9 1 2.8367 0.7657 4.9626 10 6 1.3458 2.2455 5.4407 11 6 1.2142 1.7702 6.8910 12 7 2.3435 2.3007 7.6669 13 6 2.1271 3.0123 8.8167 14 1 1.2029 3.5547 8.9502 15 6 3.0957 3.0363 9.8107 16 7 3.1006 4.0051 10.7016 17 14 4.3922 1.6934 9.8841 18 1 5.6122 2.1436 9.1671 19 1 4.7286 1.4071 11.3019 20 1 3.8664 0.4621 9.2418 21 6 3.7098 2.0541 7.1857 22 6 3.8131 2.5255 5.7319 23 1 3.6837 3.6071 5.6900 24 6 5.1870 2.1536 5.1708 25 6 3.0552 3.1138 0.6479 26 7 2.9735 3.1233 -0.6526 27 7 2.3447 1.9495 -1.0816 28 6 2.0620 1.5894 -2.4732 29 1 -0.3634 0.5880 0.8428 30 1 -0.3633 0.4359 -0.9306 31 1 -0.3634 -1.0239 0.0878 32 1 3.2555 3.1203 3.2869 33 1 1.2392 3.3296 5.4021 34 1 0.5685 1.7817 4.8334 35 1 0.2778 2.1362 7.3120 36 1 1.2299 0.6807 6.9214 37 1 3.7772 4.0216 11.3964 38 1 3.9291 0.9878 7.2406 39 1 4.4197 2.6073 7.8006 40 1 5.2597 2.4882 4.1360 41 1 5.3160 1.0721 5.2129 42 1 5.9643 2.6361 5.7635 43 1 3.4884 3.8900 1.2614 44 1 1.1133 2.0316 -2.7775 45 1 2.8598 1.9640 -3.1146 46 1 2.0027 0.5047 -2.5630 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944346314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:57 Heat of formation + Delta-G solvation = 9.239449 kcal Electronic energy + Delta-G solvation = -28148.749621 eV Core-core repulsion = 24268.641342 eV Total energy + Delta-G solvation = -3880.108279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.63223 -40.80994 -39.22715 -39.09476 -36.13946 -34.54250 -33.92757 -33.54913 -31.91508 -30.86999 -28.57045 -27.75049 -27.62378 -26.65794 -24.57377 -23.42150 -22.42841 -22.05482 -21.29906 -21.04058 -19.42773 -18.76575 -17.84661 -17.53082 -17.48611 -16.85563 -16.37738 -16.04429 -15.84332 -15.72284 -15.61504 -15.15719 -14.99365 -14.75779 -14.74668 -14.49867 -14.31723 -14.01839 -13.61961 -13.57847 -13.37452 -13.19583 -12.96611 -12.91781 -12.51588 -12.41608 -12.32987 -12.02682 -11.90842 -11.67606 -11.49920 -11.35149 -11.23257 -10.92333 -10.64649 -10.51303 -10.05034 -9.65905 -8.95363 -8.14845 -5.45968 0.13373 1.08065 1.08614 1.30375 1.43314 1.51889 2.25624 2.35298 2.42580 2.61475 3.06193 3.33002 3.40061 3.69967 3.92793 3.99577 4.02129 4.09281 4.18364 4.29999 4.32484 4.32767 4.35378 4.48190 4.54709 4.57700 4.61366 4.66815 4.69912 4.74392 4.84945 4.91421 5.01526 5.04816 5.05774 5.11896 5.24532 5.32938 5.34988 5.48708 5.61519 5.88013 6.14287 6.25284 6.38726 6.71260 6.91917 7.38117 7.63021 8.03721 9.04906 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.002972 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.163594 B = 9417.550172 C = 9765.609811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.313 3.687 4 C -0.319 4.319 5 C 0.594 3.406 6 O -0.581 6.581 7 N -0.704 5.704 8 C 0.171 3.829 9 H 0.066 0.934 10 C -0.128 4.128 11 C 0.147 3.853 12 N -0.619 5.619 13 C -0.246 4.246 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.955 5.955 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.312 1.312 20 H -0.265 1.265 21 C 0.130 3.870 22 C -0.104 4.104 23 H 0.080 0.920 24 C -0.141 4.141 25 C 0.101 3.899 26 N -0.294 5.294 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.411 0.589 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.226 0.774 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -4.229 -29.773 30.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.138 3.862 4 C -0.335 4.335 5 C 0.383 3.617 6 O -0.462 6.462 7 N -0.354 5.354 8 C 0.066 3.934 9 H 0.084 0.916 10 C -0.168 4.168 11 C 0.022 3.978 12 N -0.343 5.343 13 C -0.376 4.376 14 H 0.073 0.927 15 C -0.227 4.227 16 N -0.601 5.601 17 Si 0.769 3.231 18 H -0.196 1.196 19 H -0.241 1.241 20 H -0.190 1.190 21 C 0.004 3.996 22 C -0.125 4.125 23 H 0.099 0.901 24 C -0.198 4.198 25 C -0.085 4.085 26 N -0.116 5.116 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.248 0.752 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.243 0.757 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.017 -4.575 -30.651 31.007 hybrid contribution 0.273 -0.485 1.460 1.562 sum -0.744 -5.060 -29.191 29.635 Atomic orbital electron populations 1.23314 0.75022 1.05709 1.01653 1.85974 1.22984 1.20432 1.93012 1.19498 0.94917 0.84696 0.87056 1.20059 1.20658 1.00254 0.92530 1.17230 0.77199 0.83146 0.84162 1.90778 1.46283 1.24541 1.84613 1.45673 1.61190 1.23453 1.05120 1.20633 0.94475 0.98685 0.79574 0.91578 1.22211 0.97088 1.01357 0.96162 1.21013 0.90426 0.95839 0.90546 1.44524 1.01579 1.63048 1.25164 1.18876 1.03904 1.21237 0.93570 0.92720 1.25831 1.01014 0.99598 0.96248 1.69958 1.37667 1.32704 1.19800 0.86012 0.80062 0.81872 0.75185 1.19595 1.24129 1.18996 1.21416 0.86461 0.97612 0.94063 1.21781 0.95330 1.00959 0.94392 0.90120 1.21774 0.94885 1.01444 1.01728 1.24394 0.96048 0.96260 0.91837 1.77200 1.19267 1.01396 1.13763 1.49268 1.44663 1.13851 1.07829 1.22376 1.04581 1.03342 0.75394 0.93859 0.90817 0.85997 0.75200 0.91699 0.91637 0.92220 0.95447 0.92938 0.95447 0.92530 0.90160 0.93133 0.92241 0.75749 0.88362 0.87373 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 11.13 113.37 1.26 1.83 16 2 O -0.31 -7.04 9.74 -79.45 -0.77 -7.81 16 3 C 0.31 7.00 6.98 84.44 0.59 7.59 16 4 C -0.32 -7.49 6.15 -20.03 -0.12 -7.61 16 5 C 0.59 16.80 7.76 86.52 0.67 17.47 16 6 O -0.58 -20.97 16.04 2.68 0.04 -20.93 16 7 N -0.70 -17.32 4.36 -446.14 -1.94 -19.26 16 8 C 0.17 5.29 1.88 45.02 0.08 5.38 16 9 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 10 C -0.13 -4.28 5.65 30.67 0.17 -4.11 16 11 C 0.15 5.93 6.52 86.36 0.56 6.49 16 12 N -0.62 -29.30 2.78 -699.08 -1.94 -31.24 16 13 C -0.25 -13.99 10.04 84.03 0.84 -13.15 16 14 H 0.06 3.38 8.05 -2.91 -0.02 3.36 16 15 C -0.03 -1.88 5.23 84.86 0.44 -1.44 16 16 N -0.96 -59.93 13.97 21.65 0.30 -59.63 16 17 Si 0.94 46.73 24.35 68.60 1.67 48.40 16 18 H -0.27 -12.46 6.68 99.48 0.66 -11.80 16 19 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 20 H -0.27 -12.87 6.52 99.48 0.65 -12.22 16 21 C 0.13 5.45 3.48 86.36 0.30 5.75 16 22 C -0.10 -3.32 2.46 -10.72 -0.03 -3.34 16 23 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 24 C -0.14 -3.61 9.02 71.98 0.65 -2.96 16 25 C 0.10 1.80 11.50 85.71 0.99 2.78 16 26 N -0.29 -5.64 12.47 -56.22 -0.70 -6.35 16 27 N -0.37 -6.49 3.99 -479.80 -1.91 -8.41 16 28 C 0.08 0.67 11.41 127.77 1.46 2.13 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.41 7.42 7.26 -92.71 -0.67 6.75 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 36 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.03 1.16 7.03 -2.39 -0.02 1.14 16 39 H 0.06 2.60 4.47 -2.38 -0.01 2.58 16 40 H 0.08 1.61 7.36 -2.39 -0.02 1.59 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.23 2.20 7.50 -2.91 -0.02 2.18 16 44 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.10 0.61 8.03 -2.38 -0.02 0.59 16 Total: -1.00 -78.09 370.28 2.83 -75.26 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.22 Total: 13.16 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 7.87 Total: 16.81 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -6.20 Total: -124.89 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.73 Total: -28.74 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.67 Total: 48.40 kcal Total: -78.09 2.83 -75.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944346314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.501 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds