Wall clock time and date at job start Tue Mar 31 2020 14:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35773 * 116.99857 * 2 1 4 4 C 1.35590 * 126.07714 * 184.48365 * 3 2 1 5 5 C 1.41061 * 107.79287 * 179.97438 * 4 3 2 6 6 C 1.47726 * 125.97793 * 179.97438 * 5 4 3 7 7 O 1.21565 * 120.00121 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99605 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99873 * 179.72589 * 8 6 5 10 10 H 1.08997 * 109.46179 * 35.24070 * 9 8 6 11 11 C 1.53044 * 109.45970 * 275.27361 * 9 8 6 12 12 C 1.53186 * 109.31353 * 178.61495 * 11 9 8 13 13 N 1.46927 * 108.77941 * 54.63327 * 12 11 9 14 14 C 1.36938 * 120.63142 * 126.36914 * 13 12 11 15 15 H 1.08000 * 119.99742 * 211.11370 * 14 13 12 16 16 C 1.38806 * 120.00284 * 31.11083 * 14 13 12 17 17 N 1.31621 * 119.99744 * 9.98558 * 16 14 13 18 18 Si 1.86797 * 120.00369 * 189.98784 * 16 14 13 19 19 H 1.48504 * 109.46707 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47472 * 119.99827 * 18 16 14 21 21 H 1.48497 * 109.47137 * 240.00037 * 18 16 14 22 22 C 1.46925 * 118.73558 * 306.39189 * 13 12 11 23 23 H 1.09000 * 109.58810 * 293.81800 * 22 13 12 24 24 C 1.53004 * 109.58465 * 173.53932 * 22 13 12 25 25 C 1.53041 * 109.46371 * 155.20196 * 9 8 6 26 26 N 1.31862 * 108.04038 * 0.23071 * 5 4 3 27 27 N 1.35839 * 126.08687 * 4.46352 * 3 2 1 28 28 C 1.46504 * 125.94677 * 0.04058 * 27 3 2 29 29 H 1.08999 * 109.47103 * 186.46318 * 1 2 3 30 30 H 1.09009 * 109.46845 * 306.45970 * 1 2 3 31 31 H 1.08993 * 109.47664 * 66.45360 * 1 2 3 32 32 H 1.08002 * 126.10621 * 0.02562 * 4 3 2 33 33 H 0.96997 * 120.00286 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.49318 * 298.56384 * 11 9 8 35 35 H 1.08996 * 109.50074 * 58.65818 * 11 9 8 36 36 H 1.09004 * 109.58975 * 174.41947 * 12 11 9 37 37 H 1.08999 * 109.58650 * 294.70056 * 12 11 9 38 38 H 0.97007 * 120.00105 * 179.97438 * 17 16 14 39 39 H 1.08988 * 109.47345 * 59.99611 * 24 22 13 40 40 H 1.09002 * 109.47141 * 180.02562 * 24 22 13 41 41 H 1.09002 * 109.46823 * 299.99450 * 24 22 13 42 42 H 1.08991 * 109.49950 * 301.33571 * 25 9 8 43 43 H 1.09010 * 109.49405 * 61.43622 * 25 9 8 44 44 H 1.09003 * 109.46645 * 83.10267 * 28 27 3 45 45 H 1.09003 * 109.46646 * 203.09461 * 28 27 3 46 46 H 1.08992 * 109.47245 * 323.10123 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3813 1.4252 -0.0857 5 6 3.5962 2.8190 -0.0517 6 6 4.9070 3.4969 -0.1188 7 8 5.9264 2.8411 -0.2120 8 7 4.9728 4.8423 -0.0756 9 6 6.2731 5.5144 -0.1361 10 1 6.9399 4.9567 -0.7936 11 6 6.8789 5.5801 1.2678 12 6 8.2535 6.2524 1.1955 13 7 8.1070 7.5590 0.5398 14 6 8.5692 8.6981 1.1431 15 1 8.0700 9.6404 0.9719 16 6 9.6791 8.6417 1.9747 17 7 10.4040 7.5445 2.0312 18 14 10.1441 10.1228 3.0137 19 1 9.1760 11.2222 2.7696 20 1 10.1163 9.7481 4.4503 21 1 11.5098 10.5759 2.6467 22 6 7.4549 7.6202 -0.7754 23 1 8.0718 7.1077 -1.5135 24 6 7.2692 9.0818 -1.1883 25 6 6.0892 6.9327 -0.6811 26 7 2.4227 3.4106 0.0561 27 7 1.4335 2.4195 0.0854 28 6 -0.0096 2.6475 0.1947 29 1 -0.3633 -1.0211 0.1157 30 1 -0.3633 0.6108 0.8266 31 1 -0.3634 0.4105 -0.9420 32 1 4.1446 0.6654 -0.1664 33 1 4.1594 5.3655 -0.0009 34 1 6.2246 6.1590 1.9196 35 1 6.9879 4.5708 1.6645 36 1 8.6459 6.3911 2.2029 37 1 8.9363 5.6270 0.6203 38 1 11.1799 7.5052 2.6121 39 1 8.2420 9.5702 -1.2431 40 1 6.7849 9.1251 -2.1638 41 1 6.6478 9.5912 -0.4517 42 1 5.6362 6.8860 -1.6713 43 1 5.4423 7.4989 -0.0108 44 1 -0.3155 2.5465 1.2361 45 1 -0.2464 3.6514 -0.1578 46 1 -0.5403 1.9145 -0.4126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947533935.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:35 Heat of formation + Delta-G solvation = 21.377542 kcal Electronic energy + Delta-G solvation = -27446.068738 eV Core-core repulsion = 23566.486807 eV Total energy + Delta-G solvation = -3879.581932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.73322 -40.92825 -39.45742 -38.96837 -36.14750 -34.55873 -34.18131 -32.97376 -31.59566 -30.81100 -28.99551 -28.00731 -27.28420 -26.59571 -24.67031 -23.52861 -22.55204 -22.11638 -21.33502 -20.68980 -19.27986 -18.25359 -17.71703 -17.48084 -17.34766 -16.85782 -16.33480 -16.20523 -16.14640 -15.71706 -15.52258 -15.33132 -15.07249 -14.83324 -14.64242 -14.53258 -14.34766 -13.96975 -13.88009 -13.30383 -12.92109 -12.74568 -12.67327 -12.58771 -12.41625 -12.34776 -12.29448 -12.03747 -11.88319 -11.78530 -11.69046 -11.50085 -11.46758 -11.06014 -10.54106 -10.30264 -10.00943 -9.55294 -8.58622 -7.79926 -5.30229 0.18243 1.03263 1.07907 1.48549 1.49878 1.60042 1.76987 2.23730 2.28716 2.54467 3.07516 3.36933 3.62488 3.79700 3.89579 4.00779 4.07954 4.15966 4.25885 4.28518 4.30390 4.37555 4.41859 4.53007 4.64237 4.65238 4.72671 4.74290 4.79017 4.83966 4.97727 4.98940 5.09304 5.10209 5.18578 5.21970 5.42216 5.47072 5.56249 5.59412 5.75096 5.77521 6.09777 6.27393 6.47954 6.54980 7.09773 7.20911 7.91543 8.45200 9.27073 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.002457 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.931999 B =11391.703088 C =11618.600385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.300 6.300 3 C 0.282 3.718 4 C -0.265 4.265 5 C 0.045 3.955 6 C 0.595 3.405 7 O -0.563 6.563 8 N -0.694 5.694 9 C 0.160 3.840 10 H 0.063 0.937 11 C -0.132 4.132 12 C 0.183 3.817 13 N -0.604 5.604 14 C -0.244 4.244 15 H 0.080 0.920 16 C -0.059 4.059 17 N -0.942 5.942 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.295 1.295 21 H -0.296 1.296 22 C 0.160 3.840 23 H 0.014 0.986 24 C -0.126 4.126 25 C -0.118 4.118 26 N -0.256 5.256 27 N -0.382 5.382 28 C 0.060 3.940 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.157 0.843 33 H 0.415 0.585 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.059 0.941 37 H -0.011 1.011 38 H 0.246 0.754 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.094 -10.941 -5.816 30.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.206 6.206 3 C 0.114 3.886 4 C -0.296 4.296 5 C -0.121 4.121 6 C 0.380 3.620 7 O -0.440 6.440 8 N -0.344 5.344 9 C 0.056 3.944 10 H 0.082 0.918 11 C -0.172 4.172 12 C 0.057 3.943 13 N -0.328 5.328 14 C -0.375 4.375 15 H 0.098 0.902 16 C -0.253 4.253 17 N -0.589 5.589 18 Si 0.795 3.205 19 H -0.185 1.185 20 H -0.223 1.223 21 H -0.223 1.223 22 C 0.053 3.947 23 H 0.032 0.968 24 C -0.184 4.184 25 C -0.157 4.157 26 N -0.088 5.088 27 N -0.180 5.180 28 C -0.077 4.077 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.252 0.748 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.008 0.992 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.126 0.874 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -27.912 -10.595 -5.725 30.399 hybrid contribution 0.914 -0.149 0.830 1.243 sum -26.998 -10.744 -4.895 29.467 Atomic orbital electron populations 1.24121 0.75192 1.07553 1.03175 1.86342 1.24524 1.20218 1.89471 1.19393 0.90635 0.79995 0.98600 1.20427 0.93551 0.95368 1.20228 1.21581 0.92450 0.93478 1.04630 1.17202 0.86206 0.82417 0.76218 1.90800 1.35930 1.66009 1.51242 1.45926 1.10518 1.05397 1.72564 1.20805 0.83400 0.93619 0.96550 0.91832 1.22344 0.98880 0.99202 0.96799 1.20470 0.91260 0.84963 0.97628 1.44414 1.68253 1.03405 1.16702 1.19576 1.06019 0.89224 1.22643 0.90249 1.25963 0.96301 0.99586 1.03478 1.70173 1.18237 1.28877 1.41653 0.85211 0.77538 0.79809 0.77967 1.18515 1.22254 1.22314 1.20644 0.91412 0.96086 0.86511 0.96807 1.21704 1.01160 0.94732 1.00766 1.22197 0.98789 0.92985 1.01759 1.77612 0.95115 1.11930 1.24165 1.49419 1.08425 1.02140 1.58026 1.23087 0.71807 1.07332 1.05522 0.85059 0.89928 0.90116 0.82533 0.74796 0.92143 0.93631 0.92248 0.99245 0.94447 0.93969 0.90447 0.92689 0.89211 0.90688 0.88308 0.87380 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.39 113.37 1.06 1.04 16 2 O -0.30 -4.76 10.57 -91.01 -0.96 -5.72 16 3 C 0.28 5.90 7.78 83.46 0.65 6.55 16 4 C -0.27 -7.29 10.59 22.35 0.24 -7.05 16 5 C 0.04 1.31 7.09 42.34 0.30 1.61 16 6 C 0.60 20.52 7.79 86.75 0.68 21.19 16 7 O -0.56 -23.73 16.56 -3.92 -0.06 -23.80 16 8 N -0.69 -21.51 5.07 -445.39 -2.26 -23.77 16 9 C 0.16 5.83 2.41 45.02 0.11 5.94 16 10 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 11 C -0.13 -5.58 5.65 30.67 0.17 -5.41 16 12 C 0.18 9.48 5.26 86.36 0.45 9.93 16 13 N -0.60 -30.40 2.99 -675.23 -2.02 -32.42 16 14 C -0.24 -13.18 8.55 84.03 0.72 -12.46 16 15 H 0.08 4.06 6.26 -2.91 -0.02 4.04 16 16 C -0.06 -3.33 5.07 84.86 0.43 -2.90 16 17 N -0.94 -57.50 10.99 21.65 0.24 -57.26 16 18 Si 0.97 45.46 29.57 68.60 2.03 47.49 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 C 0.16 6.48 3.49 44.98 0.16 6.63 16 23 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 24 C -0.13 -4.42 7.97 71.98 0.57 -3.84 16 25 C -0.12 -3.83 4.85 30.67 0.15 -3.69 16 26 N -0.26 -6.30 12.26 -48.42 -0.59 -6.90 16 27 N -0.38 -6.86 4.04 -480.56 -1.94 -8.80 16 28 C 0.06 0.36 9.60 127.77 1.23 1.58 16 29 H 0.13 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.08 0.07 5.79 -2.38 -0.01 0.06 16 31 H 0.08 0.06 6.66 -2.39 -0.02 0.05 16 32 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 33 H 0.42 10.68 8.30 -92.71 -0.77 9.91 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 3.46 6.06 -2.39 -0.01 3.44 16 37 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 38 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 39 H 0.04 1.64 7.64 -2.39 -0.02 1.62 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.05 1.90 7.43 -2.39 -0.02 1.88 16 42 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.10 0.26 7.68 -2.39 -0.02 0.24 16 45 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.13 -0.02 4.59 -2.39 -0.01 -0.03 16 Total: -1.00 -77.34 366.48 1.58 -75.76 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.24 Total: 16.29 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.92 Total: 19.13 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -6.57 Total: -129.15 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.03 Total: -29.52 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -77.34 1.58 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947533935.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.133 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds