Wall clock time and date at job start Tue Mar 31 2020 14:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35766 * 117.00272 * 2 1 4 4 C 1.35587 * 126.08628 * 177.44585 * 3 2 1 5 5 C 1.41059 * 107.80002 * 179.73023 * 4 3 2 6 6 C 1.47719 * 125.97807 * 180.02562 * 5 4 3 7 7 O 1.21571 * 120.00435 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99981 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00406 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.45605 * 325.03044 * 9 8 6 11 11 C 1.53041 * 109.45660 * 85.00011 * 9 8 6 12 12 C 1.53189 * 109.31629 * 58.65841 * 11 9 8 13 13 N 1.46926 * 108.77376 * 54.63032 * 12 11 9 14 14 C 1.36939 * 120.62473 * 126.41849 * 13 12 11 15 15 H 1.08011 * 119.99516 * 214.49441 * 14 13 12 16 16 C 1.38809 * 120.00588 * 34.49421 * 14 13 12 17 17 N 1.31617 * 119.99563 * 6.21588 * 16 14 13 18 18 Si 1.86801 * 120.00078 * 186.21966 * 16 14 13 19 19 H 1.48502 * 109.47096 * 59.99947 * 18 16 14 20 20 H 1.48495 * 109.46989 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47095 * 299.99791 * 18 16 14 22 22 C 1.46924 * 118.74091 * 306.39398 * 13 12 11 23 23 H 1.08998 * 109.58545 * 293.81872 * 22 13 12 24 24 C 1.53004 * 109.58597 * 173.39892 * 22 13 12 25 25 C 1.53036 * 109.45911 * 205.06526 * 9 8 6 26 26 N 1.31861 * 108.03497 * 359.97438 * 5 4 3 27 27 N 1.35841 * 126.08295 * 357.12227 * 3 2 1 28 28 C 1.46499 * 125.94962 * 0.28021 * 27 3 2 29 29 H 1.09003 * 109.47137 * 310.28585 * 1 2 3 30 30 H 1.08998 * 109.46883 * 70.28590 * 1 2 3 31 31 H 1.08997 * 109.47489 * 190.28487 * 1 2 3 32 32 H 1.08007 * 126.09559 * 359.71257 * 4 3 2 33 33 H 0.97005 * 119.99801 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.49116 * 178.61162 * 11 9 8 35 35 H 1.09003 * 109.49486 * 298.69951 * 11 9 8 36 36 H 1.09001 * 109.58806 * 174.42219 * 12 11 9 37 37 H 1.08998 * 109.58443 * 294.70432 * 12 11 9 38 38 H 0.97011 * 119.99735 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46954 * 59.99697 * 24 22 13 40 40 H 1.08995 * 109.46693 * 180.02562 * 24 22 13 41 41 H 1.08997 * 109.46682 * 299.99902 * 24 22 13 42 42 H 1.09008 * 109.49672 * 61.29766 * 25 9 8 43 43 H 1.09008 * 109.49543 * 181.39072 * 25 9 8 44 44 H 1.09000 * 109.47519 * 83.07960 * 28 27 3 45 45 H 1.09000 * 109.46972 * 203.08342 * 28 27 3 46 46 H 1.09004 * 109.47261 * 323.07647 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 3.3834 1.4242 0.0488 5 6 3.5978 2.8182 0.0228 6 6 4.9102 3.4951 0.0585 7 8 5.9316 2.8384 0.1162 8 7 4.9753 4.8410 0.0282 9 6 6.2769 5.5125 0.0642 10 1 6.9608 4.9451 0.6954 11 6 6.8451 5.5993 -1.3541 12 6 5.8653 6.3677 -2.2464 13 7 5.5846 7.6706 -1.6280 14 6 5.7530 8.8300 -2.3369 15 1 6.0941 9.7243 -1.8363 16 6 5.4853 8.8561 -3.6987 17 7 4.9543 7.8043 -4.2851 18 14 5.8787 10.3840 -4.6988 19 1 7.3333 10.6704 -4.6136 20 1 5.5014 10.1578 -6.1171 21 1 5.1146 11.5381 -4.1608 22 6 5.1194 7.7057 -0.2348 23 1 4.1319 7.2492 -0.1677 24 6 5.0507 9.1565 0.2466 25 6 6.1076 6.9223 0.6349 26 7 2.4216 3.4110 -0.0402 27 7 1.4318 2.4203 -0.0551 28 6 -0.0137 2.6497 -0.1193 29 1 -0.3633 0.6645 0.7839 30 1 -0.3633 0.3467 -0.9674 31 1 -0.3634 -1.0111 0.1835 32 1 4.1484 0.6634 0.0990 33 1 4.1603 5.3651 -0.0174 34 1 7.8021 6.1207 -1.3312 35 1 6.9874 4.5941 -1.7511 36 1 6.3086 6.5183 -3.2308 37 1 4.9396 5.8008 -2.3453 38 1 4.7668 7.8226 -5.2368 39 1 4.3567 9.7151 -0.3814 40 1 4.7059 9.1803 1.2803 41 1 6.0411 9.6073 0.1838 42 1 5.7248 6.8589 1.6536 43 1 7.0715 7.4313 0.6390 44 1 -0.4329 2.6099 0.8861 45 1 -0.2070 3.6300 -0.5550 46 1 -0.4767 1.8800 -0.7368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947533936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:39 Heat of formation + Delta-G solvation = 47.243397 kcal Electronic energy + Delta-G solvation = -28179.140451 eV Core-core repulsion = 24300.680147 eV Total energy + Delta-G solvation = -3878.460304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.70179 -39.60672 -38.43406 -37.41132 -34.22287 -33.61642 -32.28039 -31.29275 -30.22166 -29.42177 -28.09689 -26.62670 -26.26030 -24.92916 -23.42205 -21.88572 -21.56667 -20.58511 -20.03578 -18.56061 -18.28330 -16.96975 -16.39451 -16.36458 -15.77406 -15.34271 -15.23328 -14.97771 -14.83143 -14.42969 -14.05309 -13.94923 -13.75473 -13.60965 -13.38608 -13.10977 -13.00254 -12.69098 -12.38103 -11.80110 -11.74297 -11.51731 -11.37689 -11.13259 -10.91919 -10.85616 -10.66178 -10.56581 -10.38933 -10.07951 -10.00526 -9.79675 -9.62409 -9.29032 -9.26007 -8.52883 -8.50722 -8.40096 -6.48939 -5.72446 -3.23764 1.38681 2.00171 2.17020 2.64779 3.39992 3.45667 3.45967 3.52127 3.66084 4.06317 4.40697 4.50902 4.52027 4.74437 4.78598 4.87431 5.14381 5.20756 5.33405 5.41156 5.43651 5.52277 5.68520 5.74444 5.78059 5.84380 6.06981 6.18998 6.31560 6.33797 6.38004 6.44889 6.51246 6.64447 6.71195 6.85308 7.02276 7.08707 7.10988 7.12935 7.29248 7.48161 7.80675 7.85886 7.94907 8.52200 8.55718 9.28895 9.89843 10.49666 11.34925 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.003288 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.167661 B = 8512.564959 C = 9138.192431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.264 3.736 4 C -0.234 4.234 5 C 0.063 3.937 6 C 0.598 3.402 7 O -0.534 6.534 8 N -0.695 5.695 9 C 0.153 3.847 10 H 0.075 0.925 11 C -0.155 4.155 12 C 0.176 3.824 13 N -0.587 5.587 14 C -0.251 4.251 15 H 0.066 0.934 16 C 0.007 3.993 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.167 3.833 23 H 0.021 0.979 24 C -0.135 4.135 25 C -0.139 4.139 26 N -0.243 5.243 27 N -0.394 5.394 28 C 0.078 3.922 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.165 0.835 33 H 0.408 0.592 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.253 0.747 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 -12.113 10.595 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.098 3.902 4 C -0.264 4.264 5 C -0.105 4.105 6 C 0.380 3.620 7 O -0.409 6.409 8 N -0.346 5.346 9 C 0.049 3.951 10 H 0.093 0.907 11 C -0.195 4.195 12 C 0.051 3.949 13 N -0.310 5.310 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.060 3.940 23 H 0.039 0.961 24 C -0.193 4.193 25 C -0.178 4.178 26 N -0.074 5.074 27 N -0.191 5.191 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.182 0.818 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.119 0.881 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.454 -11.767 10.391 18.860 hybrid contribution -0.354 0.258 -0.710 0.835 sum -10.808 -11.510 9.680 18.520 Atomic orbital electron populations 1.23633 0.78126 1.05114 1.01589 1.86295 1.21499 1.21692 1.90032 1.19548 0.91085 0.78904 1.00646 1.20335 0.91896 0.95664 1.18514 1.21982 0.92997 0.93020 1.02505 1.16849 0.85679 0.82382 0.77069 1.90773 1.34157 1.65310 1.50633 1.46045 1.10979 1.05401 1.72220 1.20969 0.83443 0.92568 0.98074 0.90674 1.22588 1.00815 1.00474 0.95630 1.20718 0.94275 0.84247 0.95688 1.44065 1.76230 1.02831 1.07897 1.19066 1.38188 0.90009 0.90797 0.91670 1.25261 0.98551 0.97064 0.98320 1.69958 1.45747 1.28782 1.10229 0.86397 0.78150 0.83038 0.79264 1.21024 1.21734 1.20953 1.20404 0.93373 0.93809 0.86386 0.96145 1.21786 1.01994 0.97175 0.98336 1.22370 1.02227 0.94822 0.98430 1.77810 0.95158 1.10821 1.23581 1.49071 1.06982 1.02968 1.60121 1.22492 0.74704 1.05737 1.03326 0.91815 0.91787 0.87456 0.81753 0.75523 0.91720 0.92692 0.89605 0.96362 0.93676 0.91952 0.94402 0.92777 0.92571 0.90573 0.90437 0.88109 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.45 101.05 0.96 1.01 16 2 O -0.29 -3.01 10.57 -19.01 -0.20 -3.21 16 3 C 0.26 3.41 7.77 -16.72 -0.13 3.28 16 4 C -0.23 -3.52 10.59 -39.46 -0.42 -3.94 16 5 C 0.06 1.05 7.09 -82.91 -0.59 0.46 16 6 C 0.60 10.99 7.79 -12.39 -0.10 10.89 16 7 O -0.53 -10.91 16.56 5.30 0.09 -10.82 16 8 N -0.69 -12.44 4.26 -54.75 -0.23 -12.67 16 9 C 0.15 2.78 2.78 -67.89 -0.19 2.59 16 10 H 0.08 1.34 7.57 -51.93 -0.39 0.94 16 11 C -0.15 -3.17 5.77 -26.61 -0.15 -3.32 16 12 C 0.18 4.26 4.96 -3.71 -0.02 4.24 16 13 N -0.59 -14.23 2.98 -164.78 -0.49 -14.72 16 14 C -0.25 -6.65 8.45 -15.06 -0.13 -6.78 16 15 H 0.07 1.69 6.37 -52.48 -0.33 1.35 16 16 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 17 N -0.90 -26.11 11.04 55.49 0.61 -25.49 16 18 Si 0.90 21.59 29.56 -169.99 -5.02 16.57 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.17 3.36 3.20 -67.60 -0.22 3.14 16 23 H 0.02 0.43 6.64 -51.93 -0.34 0.09 16 24 C -0.14 -2.49 7.99 37.16 0.30 -2.20 16 25 C -0.14 -2.39 5.07 -26.62 -0.13 -2.52 16 26 N -0.24 -3.84 12.26 33.34 0.41 -3.43 16 27 N -0.39 -4.91 4.03 -68.19 -0.28 -5.19 16 28 C 0.08 0.56 9.59 59.85 0.57 1.13 16 29 H 0.06 0.27 5.97 -51.93 -0.31 -0.04 16 30 H 0.06 0.27 6.34 -51.93 -0.33 -0.06 16 31 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.16 2.33 8.06 -52.48 -0.42 1.91 16 33 H 0.41 7.30 6.56 -40.82 -0.27 7.03 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 2.35 6.21 -51.93 -0.32 2.03 16 37 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 38 H 0.25 7.16 8.31 -40.81 -0.34 6.82 16 39 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.00 7.42 -51.93 -0.39 0.62 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 43 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 44 H 0.08 0.40 7.51 -51.93 -0.39 0.01 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 0.43 4.76 -51.93 -0.25 0.19 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -33.02 362.35 -6.63 -39.65 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.64 Total: 5.77 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.34 Total: 8.09 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.02 Total: -61.51 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.11 Total: -14.03 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.02 -6.63 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947533936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.892 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds