Wall clock time and date at job start Tue Mar 31 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35777 * 116.99581 * 2 1 4 4 C 1.35590 * 126.08460 * 178.96206 * 3 2 1 5 5 C 1.41054 * 107.80117 * 180.15375 * 4 3 2 6 6 C 1.47720 * 125.98470 * 179.82588 * 5 4 3 7 7 O 1.21569 * 119.99949 * 359.72279 * 6 5 4 8 8 N 1.34775 * 120.00100 * 179.71677 * 6 5 4 9 9 C 1.46496 * 120.00039 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.45036 * 325.03854 * 9 8 6 11 11 C 1.53041 * 109.45919 * 85.00135 * 9 8 6 12 12 C 1.53201 * 109.31512 * 181.38698 * 11 9 8 13 13 N 1.46924 * 108.77215 * 305.36408 * 12 11 9 14 14 C 1.36930 * 120.63047 * 233.58357 * 13 12 11 15 15 H 1.08007 * 120.00145 * 150.12761 * 14 13 12 16 16 C 1.38814 * 120.00140 * 330.12348 * 14 13 12 17 17 N 1.31614 * 119.99810 * 332.49628 * 16 14 13 18 18 Si 1.86800 * 120.00070 * 152.49904 * 16 14 13 19 19 H 1.48502 * 109.46857 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46990 * 299.99936 * 18 16 14 21 21 H 1.48494 * 109.47393 * 60.00075 * 18 16 14 22 22 C 1.46930 * 118.73912 * 53.85826 * 13 12 11 23 23 H 1.09000 * 109.58706 * 65.93039 * 22 13 12 24 24 C 1.52999 * 109.58832 * 186.34937 * 22 13 12 25 25 C 1.53033 * 109.46244 * 205.06727 * 9 8 6 26 26 N 1.31867 * 108.03457 * 359.56472 * 5 4 3 27 27 N 1.35839 * 126.08399 * 358.63633 * 3 2 1 28 28 C 1.46501 * 125.94913 * 359.96456 * 27 3 2 29 29 H 1.08994 * 109.46802 * 292.17741 * 1 2 3 30 30 H 1.08993 * 109.47362 * 52.18296 * 1 2 3 31 31 H 1.09000 * 109.46672 * 172.18374 * 1 2 3 32 32 H 1.08003 * 126.10004 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00145 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.50282 * 61.43391 * 11 9 8 35 35 H 1.09003 * 109.52644 * 301.35174 * 11 9 8 36 36 H 1.08997 * 109.58762 * 185.57990 * 12 11 9 37 37 H 1.08998 * 109.70136 * 65.21584 * 12 11 9 38 38 H 0.97001 * 120.00208 * 354.12186 * 17 16 14 39 39 H 1.09000 * 109.47081 * 60.00037 * 24 22 13 40 40 H 1.08995 * 109.47410 * 179.97438 * 24 22 13 41 41 H 1.09002 * 109.47366 * 300.00164 * 24 22 13 42 42 H 1.09002 * 109.50316 * 298.56945 * 25 9 8 43 43 H 1.09006 * 109.49820 * 58.63272 * 25 9 8 44 44 H 1.08998 * 109.47581 * 275.85443 * 28 27 3 45 45 H 1.08998 * 109.46921 * 35.85830 * 28 27 3 46 46 H 1.09001 * 109.46551 * 155.85438 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3841 1.4241 0.0198 5 6 3.5977 2.8184 0.0154 6 6 4.9105 3.4953 0.0359 7 8 5.9329 2.8382 0.0641 8 7 4.9748 4.8415 0.0232 9 6 6.2767 5.5128 0.0430 10 1 6.9730 4.9367 0.6524 11 6 6.8169 5.6198 -1.3849 12 6 8.1938 6.2910 -1.3569 13 7 8.0782 7.5779 -0.6575 14 6 8.5131 8.7344 -1.2478 15 1 8.0359 9.6740 -1.0115 16 6 9.5675 8.6991 -2.1500 17 7 10.4802 7.7552 -2.0589 18 14 9.6911 9.9913 -3.4933 19 1 10.8981 9.7330 -4.3190 20 1 8.4815 9.9293 -4.3525 21 1 9.7916 11.3384 -2.8766 22 6 7.4926 7.5997 0.6899 23 1 8.1445 7.0643 1.3803 24 6 7.3280 9.0481 1.1544 25 6 6.1187 6.9144 0.6367 26 7 2.4205 3.4117 -0.0159 27 7 1.4306 2.4209 -0.0261 28 6 -0.0159 2.6506 -0.0600 29 1 -0.3633 0.3879 0.9516 30 1 -0.3634 0.6301 -0.8118 31 1 -0.3633 -1.0181 -0.1398 32 1 4.1501 0.6630 0.0389 33 1 4.1590 5.3659 0.0003 34 1 6.1334 6.2167 -1.9888 35 1 6.9071 4.6227 -1.8159 36 1 8.5391 6.4593 -2.3769 37 1 8.9035 5.6521 -0.8314 38 1 10.4647 7.1359 -1.3125 39 1 6.6707 9.5782 0.4652 40 1 6.8932 9.0621 2.1538 41 1 8.3025 9.5361 1.1750 42 1 5.4417 7.4992 0.0139 43 1 5.7114 6.8387 1.6449 44 1 -0.3689 2.5933 -1.0897 45 1 -0.5185 1.8914 0.5392 46 1 -0.2364 3.6381 0.3453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947533937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:42 Heat of formation + Delta-G solvation = 43.159203 kcal Electronic energy + Delta-G solvation = -27486.190377 eV Core-core repulsion = 23607.552969 eV Total energy + Delta-G solvation = -3878.637408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90166 -39.67800 -38.57341 -37.61191 -34.68105 -33.82559 -32.52125 -31.50056 -30.40826 -29.24170 -28.29356 -26.79226 -26.32738 -24.77187 -23.35326 -21.93154 -21.74295 -20.75422 -19.97349 -19.23197 -18.36278 -17.12708 -16.93049 -16.46911 -16.14819 -15.65827 -15.25330 -15.14971 -14.80628 -14.60296 -14.29227 -14.08330 -13.72998 -13.52058 -13.48950 -13.31401 -13.27013 -13.06596 -12.62000 -11.90745 -11.74629 -11.62404 -11.34407 -11.23700 -11.08421 -10.90511 -10.62125 -10.58021 -10.29883 -10.13472 -10.04775 -9.92913 -9.83478 -9.47810 -9.15109 -8.71894 -8.69650 -8.26393 -6.81075 -5.99566 -3.16025 1.16417 1.79356 1.97920 2.47310 3.29529 3.43492 3.53164 3.57342 3.75000 3.86076 4.24899 4.33228 4.54271 4.59443 4.64169 4.70352 4.93486 5.01664 5.14253 5.22168 5.34052 5.45953 5.53687 5.60151 5.64908 5.75561 5.92768 6.11654 6.14014 6.19737 6.29958 6.33748 6.38705 6.49506 6.56013 6.68645 6.81753 6.91812 6.97640 7.06071 7.07512 7.14522 7.27623 7.71148 8.12371 8.31209 8.65229 9.19107 9.92451 10.38666 11.27536 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.002485 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.805135 B =11263.830229 C =11421.505961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.288 6.288 3 C 0.267 3.733 4 C -0.234 4.234 5 C 0.064 3.936 6 C 0.595 3.405 7 O -0.523 6.523 8 N -0.707 5.707 9 C 0.151 3.849 10 H 0.084 0.916 11 C -0.142 4.142 12 C 0.157 3.843 13 N -0.594 5.594 14 C -0.350 4.350 15 H 0.060 0.940 16 C -0.022 4.022 17 N -0.911 5.911 18 Si 1.059 2.941 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.293 1.293 22 C 0.172 3.828 23 H 0.026 0.974 24 C -0.132 4.132 25 C -0.134 4.134 26 N -0.251 5.251 27 N -0.395 5.395 28 C 0.076 3.924 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.402 0.598 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.020 0.980 38 H 0.269 0.731 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.224 -12.104 5.730 27.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.194 6.194 3 C 0.101 3.899 4 C -0.264 4.264 5 C -0.104 4.104 6 C 0.378 3.622 7 O -0.396 6.396 8 N -0.357 5.357 9 C 0.048 3.952 10 H 0.102 0.898 11 C -0.182 4.182 12 C 0.030 3.970 13 N -0.318 5.318 14 C -0.479 4.479 15 H 0.077 0.923 16 C -0.225 4.225 17 N -0.550 5.550 18 Si 0.889 3.111 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.221 1.221 22 C 0.065 3.935 23 H 0.043 0.957 24 C -0.189 4.189 25 C -0.174 4.174 26 N -0.082 5.082 27 N -0.192 5.192 28 C -0.064 4.064 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.184 0.816 33 H 0.237 0.763 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.225 -11.273 4.381 26.185 hybrid contribution -1.484 -0.965 1.314 2.204 sum -24.709 -12.238 5.695 28.155 Atomic orbital electron populations 1.23656 0.78043 1.05367 1.01452 1.86319 1.21567 1.21570 1.89910 1.19559 0.91053 0.78897 1.00436 1.20381 0.91957 0.95725 1.18296 1.22005 0.92900 0.93099 1.02403 1.16895 0.85742 0.82379 0.77200 1.90826 1.34047 1.65138 1.49600 1.46179 1.10707 1.05514 1.73325 1.21083 0.82977 0.92966 0.98189 0.89769 1.22457 1.00417 1.00261 0.95104 1.20876 0.91657 0.86128 0.98321 1.44257 1.71696 1.04201 1.11657 1.19884 1.14254 0.87568 1.26230 0.92272 1.25813 0.91303 1.02654 1.02760 1.70761 1.30437 1.20011 1.33770 0.83611 0.75761 0.74995 0.76687 1.21225 1.22165 1.22052 1.20444 0.90628 0.94351 0.88047 0.95678 1.21749 1.02125 0.96806 0.98252 1.22450 1.00852 0.94578 0.99494 1.77719 0.95111 1.11020 1.24341 1.49059 1.06887 1.02958 1.60286 1.22538 0.74670 1.05583 1.03618 0.91852 0.91709 0.87259 0.81605 0.76326 0.92185 0.92509 0.90373 0.96234 0.92014 0.92738 0.94372 0.91881 0.91611 0.92502 0.90313 0.88574 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.40 101.05 0.95 0.99 16 2 O -0.29 -2.57 10.57 -19.04 -0.20 -2.78 16 3 C 0.27 2.97 7.78 -16.72 -0.13 2.84 16 4 C -0.23 -3.14 10.59 -39.46 -0.42 -3.56 16 5 C 0.06 0.93 7.09 -82.91 -0.59 0.34 16 6 C 0.60 9.95 7.79 -12.39 -0.10 9.85 16 7 O -0.52 -10.36 16.56 5.30 0.09 -10.27 16 8 N -0.71 -11.04 5.07 -54.75 -0.28 -11.32 16 9 C 0.15 2.71 2.41 -67.89 -0.16 2.54 16 10 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 11 C -0.14 -2.86 5.65 -26.61 -0.15 -3.01 16 12 C 0.16 3.75 4.80 -3.71 -0.02 3.73 16 13 N -0.59 -14.61 2.80 -164.52 -0.46 -15.07 16 14 C -0.35 -9.51 8.42 -15.06 -0.13 -9.64 16 15 H 0.06 1.60 6.34 -52.48 -0.33 1.26 16 16 C -0.02 -0.63 4.59 -17.43 -0.08 -0.71 16 17 N -0.91 -27.40 12.55 55.49 0.70 -26.70 16 18 Si 1.06 25.29 30.00 -169.99 -5.10 20.19 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.17 3.57 3.51 -67.37 -0.24 3.33 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 C -0.13 -2.51 7.96 37.16 0.30 -2.21 16 25 C -0.13 -2.31 4.86 -26.39 -0.13 -2.44 16 26 N -0.25 -3.26 12.26 33.34 0.41 -2.85 16 27 N -0.39 -4.01 4.03 -68.19 -0.28 -4.29 16 28 C 0.08 0.37 9.60 59.85 0.57 0.95 16 29 H 0.06 0.15 6.50 -51.93 -0.34 -0.18 16 30 H 0.06 0.17 5.92 -51.93 -0.31 -0.14 16 31 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 33 H 0.40 5.49 8.30 -40.82 -0.34 5.15 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 2.08 6.54 -51.93 -0.34 1.74 16 37 H 0.02 0.49 7.93 -51.93 -0.41 0.08 16 38 H 0.27 8.22 7.07 -40.82 -0.29 7.93 16 39 H 0.05 1.05 7.44 -51.93 -0.39 0.66 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.31 7.63 -51.93 -0.40 0.92 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.27 7.66 -51.93 -0.40 -0.13 16 45 H 0.10 0.22 4.57 -51.93 -0.24 -0.02 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -34.18 366.31 -6.69 -40.87 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.77 Total: 3.70 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.32 Total: 3.00 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: 0.09 Total: -60.23 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.11 Total: -13.05 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.18 -6.69 -40.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947533937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.027 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds