Wall clock time and date at job start Tue Mar 31 2020 14:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35777 * 116.99581 * 2 1 4 4 C 1.35590 * 126.08460 * 178.96206 * 3 2 1 5 5 C 1.41054 * 107.80117 * 180.15375 * 4 3 2 6 6 C 1.47720 * 125.98470 * 179.82588 * 5 4 3 7 7 O 1.21569 * 119.99949 * 359.72279 * 6 5 4 8 8 N 1.34775 * 120.00100 * 179.71677 * 6 5 4 9 9 C 1.46496 * 120.00039 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.45036 * 325.03854 * 9 8 6 11 11 C 1.53041 * 109.45919 * 85.00135 * 9 8 6 12 12 C 1.53201 * 109.31512 * 181.38698 * 11 9 8 13 13 N 1.46924 * 108.77215 * 305.36408 * 12 11 9 14 14 C 1.36930 * 120.63047 * 233.58357 * 13 12 11 15 15 H 1.08007 * 120.00145 * 150.12761 * 14 13 12 16 16 C 1.38814 * 120.00140 * 330.12348 * 14 13 12 17 17 N 1.31614 * 119.99810 * 332.49628 * 16 14 13 18 18 Si 1.86800 * 120.00070 * 152.49904 * 16 14 13 19 19 H 1.48502 * 109.46857 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46990 * 299.99936 * 18 16 14 21 21 H 1.48494 * 109.47393 * 60.00075 * 18 16 14 22 22 C 1.46930 * 118.73912 * 53.85826 * 13 12 11 23 23 H 1.09000 * 109.58706 * 65.93039 * 22 13 12 24 24 C 1.52999 * 109.58832 * 186.34937 * 22 13 12 25 25 C 1.53033 * 109.46244 * 205.06727 * 9 8 6 26 26 N 1.31867 * 108.03457 * 359.56472 * 5 4 3 27 27 N 1.35839 * 126.08399 * 358.63633 * 3 2 1 28 28 C 1.46501 * 125.94913 * 359.96456 * 27 3 2 29 29 H 1.08994 * 109.46802 * 292.17741 * 1 2 3 30 30 H 1.08993 * 109.47362 * 52.18296 * 1 2 3 31 31 H 1.09000 * 109.46672 * 172.18374 * 1 2 3 32 32 H 1.08003 * 126.10004 * 359.97438 * 4 3 2 33 33 H 0.97006 * 120.00145 * 359.97438 * 8 6 5 34 34 H 1.09004 * 109.50282 * 61.43391 * 11 9 8 35 35 H 1.09003 * 109.52644 * 301.35174 * 11 9 8 36 36 H 1.08997 * 109.58762 * 185.57990 * 12 11 9 37 37 H 1.08998 * 109.70136 * 65.21584 * 12 11 9 38 38 H 0.97001 * 120.00208 * 354.12186 * 17 16 14 39 39 H 1.09000 * 109.47081 * 60.00037 * 24 22 13 40 40 H 1.08995 * 109.47410 * 179.97438 * 24 22 13 41 41 H 1.09002 * 109.47366 * 300.00164 * 24 22 13 42 42 H 1.09002 * 109.50316 * 298.56945 * 25 9 8 43 43 H 1.09006 * 109.49820 * 58.63272 * 25 9 8 44 44 H 1.08998 * 109.47581 * 275.85443 * 28 27 3 45 45 H 1.08998 * 109.46921 * 35.85830 * 28 27 3 46 46 H 1.09001 * 109.46551 * 155.85438 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3841 1.4241 0.0198 5 6 3.5977 2.8184 0.0154 6 6 4.9105 3.4953 0.0359 7 8 5.9329 2.8382 0.0641 8 7 4.9748 4.8415 0.0232 9 6 6.2767 5.5128 0.0430 10 1 6.9730 4.9367 0.6524 11 6 6.8169 5.6198 -1.3849 12 6 8.1938 6.2910 -1.3569 13 7 8.0782 7.5779 -0.6575 14 6 8.5131 8.7344 -1.2478 15 1 8.0359 9.6740 -1.0115 16 6 9.5675 8.6991 -2.1500 17 7 10.4802 7.7552 -2.0589 18 14 9.6911 9.9913 -3.4933 19 1 10.8981 9.7330 -4.3190 20 1 8.4815 9.9293 -4.3525 21 1 9.7916 11.3384 -2.8766 22 6 7.4926 7.5997 0.6899 23 1 8.1445 7.0643 1.3803 24 6 7.3280 9.0481 1.1544 25 6 6.1187 6.9144 0.6367 26 7 2.4205 3.4117 -0.0159 27 7 1.4306 2.4209 -0.0261 28 6 -0.0159 2.6506 -0.0600 29 1 -0.3633 0.3879 0.9516 30 1 -0.3634 0.6301 -0.8118 31 1 -0.3633 -1.0181 -0.1398 32 1 4.1501 0.6630 0.0389 33 1 4.1590 5.3659 0.0003 34 1 6.1334 6.2167 -1.9888 35 1 6.9071 4.6227 -1.8159 36 1 8.5391 6.4593 -2.3769 37 1 8.9035 5.6521 -0.8314 38 1 10.4647 7.1359 -1.3125 39 1 6.6707 9.5782 0.4652 40 1 6.8932 9.0621 2.1538 41 1 8.3025 9.5361 1.1750 42 1 5.4417 7.4992 0.0139 43 1 5.7114 6.8387 1.6449 44 1 -0.3689 2.5933 -1.0897 45 1 -0.5185 1.8914 0.5392 46 1 -0.2364 3.6381 0.3453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947533937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:41 Heat of formation + Delta-G solvation = 17.558860 kcal Electronic energy + Delta-G solvation = -27487.300491 eV Core-core repulsion = 23607.552969 eV Total energy + Delta-G solvation = -3879.747522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.76098 -41.00469 -39.55482 -39.05157 -36.30547 -34.60348 -34.30596 -33.10349 -31.54507 -30.75949 -29.01159 -28.05670 -27.30776 -26.50686 -24.66205 -23.61947 -22.59274 -22.24366 -21.39280 -20.76557 -19.34694 -18.82435 -17.75338 -17.53873 -17.34274 -16.61698 -16.35861 -16.31745 -16.21828 -15.86591 -15.42162 -15.37265 -15.18369 -14.99234 -14.79736 -14.66033 -14.32773 -14.03130 -13.89674 -13.48066 -13.06124 -12.77687 -12.67452 -12.45855 -12.38241 -12.34902 -12.32098 -11.97072 -11.88889 -11.83055 -11.78242 -11.64644 -11.41361 -11.04182 -10.40036 -10.33425 -10.08487 -9.57539 -8.88399 -8.17439 -5.32648 0.14826 1.00637 1.05416 1.60230 1.67690 1.72860 1.86046 2.19902 2.23597 2.69569 3.03799 3.24719 3.50042 3.72825 3.81658 3.94123 3.99043 4.12137 4.17419 4.24029 4.26640 4.28918 4.36449 4.48269 4.50735 4.59422 4.61103 4.64231 4.70946 4.72187 4.86734 4.96344 4.97415 5.00700 5.05025 5.17023 5.19068 5.22827 5.39207 5.44980 5.53319 5.99502 6.06333 6.24997 6.44039 6.49727 7.03755 7.11358 7.84711 8.31461 9.06296 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.002485 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.805135 B =11263.830229 C =11421.505961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.283 3.717 4 C -0.265 4.265 5 C 0.044 3.956 6 C 0.597 3.403 7 O -0.563 6.563 8 N -0.694 5.694 9 C 0.161 3.839 10 H 0.066 0.934 11 C -0.127 4.127 12 C 0.165 3.835 13 N -0.609 5.609 14 C -0.343 4.343 15 H 0.064 0.936 16 C -0.081 4.081 17 N -0.944 5.944 18 Si 1.109 2.891 19 H -0.298 1.298 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.160 3.840 23 H 0.014 0.986 24 C -0.123 4.123 25 C -0.117 4.117 26 N -0.256 5.256 27 N -0.381 5.381 28 C 0.060 3.940 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.044 0.956 37 H -0.002 1.002 38 H 0.250 0.750 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.037 0.963 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.127 0.873 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.598 -11.682 6.385 31.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.205 6.205 3 C 0.114 3.886 4 C -0.296 4.296 5 C -0.122 4.122 6 C 0.381 3.619 7 O -0.439 6.439 8 N -0.344 5.344 9 C 0.057 3.943 10 H 0.084 0.916 11 C -0.167 4.167 12 C 0.038 3.962 13 N -0.334 5.334 14 C -0.472 4.472 15 H 0.082 0.918 16 C -0.277 4.277 17 N -0.586 5.586 18 Si 0.934 3.066 19 H -0.225 1.225 20 H -0.208 1.208 21 H -0.199 1.199 22 C 0.054 3.946 23 H 0.032 0.968 24 C -0.180 4.180 25 C -0.157 4.157 26 N -0.089 5.089 27 N -0.180 5.180 28 C -0.078 4.078 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.145 0.855 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.690 -10.836 5.067 30.163 hybrid contribution -0.321 -1.212 1.180 1.722 sum -28.011 -12.048 6.247 31.126 Atomic orbital electron populations 1.24119 0.75164 1.07533 1.03182 1.86345 1.24544 1.20198 1.89444 1.19402 0.90585 0.79970 0.98619 1.20419 0.93412 0.95337 1.20389 1.21556 0.92350 0.93459 1.04826 1.17196 0.86300 0.82350 0.76066 1.90800 1.35765 1.65960 1.51374 1.45896 1.10187 1.05358 1.72999 1.20762 0.83775 0.93632 0.96109 0.91622 1.22233 0.98131 0.99354 0.97008 1.20632 0.93279 0.86226 0.96026 1.44503 1.71804 1.03557 1.13502 1.20159 1.13153 0.88522 1.25405 0.91797 1.27142 0.91316 1.04045 1.05180 1.70894 1.32364 1.21521 1.33792 0.82933 0.75571 0.73702 0.74345 1.22458 1.20758 1.19881 1.20731 0.91985 0.96099 0.85750 0.96781 1.21661 1.00968 0.94929 1.00453 1.22253 0.98626 0.93231 1.01568 1.77613 0.95027 1.11961 1.24256 1.49420 1.08222 1.02056 1.58278 1.23098 0.71600 1.07326 1.05773 0.89952 0.90059 0.85067 0.82503 0.74733 0.91826 0.93066 0.93761 0.98427 0.94002 0.92828 0.90413 0.94408 0.90731 0.89144 0.88260 0.85526 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.40 113.37 1.07 1.04 16 2 O -0.30 -4.65 10.57 -91.05 -0.96 -5.61 16 3 C 0.28 5.81 7.78 83.46 0.65 6.46 16 4 C -0.27 -7.16 10.59 22.35 0.24 -6.92 16 5 C 0.04 1.27 7.09 42.34 0.30 1.57 16 6 C 0.60 20.13 7.79 86.75 0.68 20.81 16 7 O -0.56 -23.19 16.56 -3.93 -0.07 -23.25 16 8 N -0.69 -21.07 5.07 -445.42 -2.26 -23.33 16 9 C 0.16 5.74 2.41 45.02 0.11 5.85 16 10 H 0.07 2.63 7.57 -2.39 -0.02 2.61 16 11 C -0.13 -5.23 5.65 30.68 0.17 -5.06 16 12 C 0.17 8.28 4.80 86.37 0.41 8.70 16 13 N -0.61 -30.51 2.80 -674.41 -1.89 -32.40 16 14 C -0.34 -18.79 8.42 84.04 0.71 -18.09 16 15 H 0.06 3.41 6.34 -2.91 -0.02 3.39 16 16 C -0.08 -4.63 4.59 84.86 0.39 -4.24 16 17 N -0.94 -59.22 12.55 21.65 0.27 -58.95 16 18 Si 1.11 51.64 30.00 68.60 2.06 53.69 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.16 6.53 3.51 45.12 0.16 6.69 16 23 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 24 C -0.12 -4.44 7.96 71.98 0.57 -3.87 16 25 C -0.12 -3.81 4.86 30.82 0.15 -3.66 16 26 N -0.26 -6.21 12.26 -48.43 -0.59 -6.81 16 27 N -0.38 -6.73 4.03 -480.56 -1.94 -8.67 16 28 C 0.06 0.34 9.60 127.77 1.23 1.56 16 29 H 0.08 0.02 6.50 -2.39 -0.02 0.01 16 30 H 0.08 0.07 5.92 -2.39 -0.01 0.05 16 31 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.42 10.51 8.30 -92.70 -0.77 9.74 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 2.49 6.54 -2.39 -0.02 2.47 16 37 H 0.00 -0.12 7.93 -2.39 -0.02 -0.14 16 38 H 0.25 16.21 7.07 -92.71 -0.66 15.55 16 39 H 0.05 1.94 7.44 -2.39 -0.02 1.92 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.04 1.53 7.63 -2.39 -0.02 1.52 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.10 0.23 7.66 -2.39 -0.02 0.21 16 45 H 0.13 -0.05 4.57 -2.39 -0.01 -0.06 16 46 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -78.45 366.31 1.80 -76.65 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.35 Total: 17.83 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.83 Total: 10.85 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -6.41 Total: -130.16 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.03 Total: -28.87 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.06 Total: 53.69 kcal Total: -78.45 1.80 -76.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947533937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.210 kcal (2) G-P(sol) polarization free energy of solvation -78.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds