Wall clock time and date at job start Tue Mar 31 2020 14:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35779 * 116.99730 * 2 1 4 4 C 1.35585 * 126.08049 * 179.81085 * 3 2 1 5 5 C 1.41067 * 107.79270 * 180.19760 * 4 3 2 6 6 C 1.47719 * 125.98075 * 179.83241 * 5 4 3 7 7 O 1.21578 * 119.99875 * 359.70696 * 6 5 4 8 8 N 1.34774 * 120.00421 * 179.43878 * 6 5 4 9 9 C 1.46493 * 120.00525 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46144 * 34.99784 * 9 8 6 11 11 C 1.53041 * 109.46061 * 275.02856 * 9 8 6 12 12 C 1.53163 * 109.32626 * 301.35523 * 11 9 8 13 13 N 1.46929 * 108.77016 * 305.35591 * 12 11 9 14 14 C 1.36933 * 120.63155 * 233.58744 * 13 12 11 15 15 H 1.08000 * 120.00174 * 149.91765 * 14 13 12 16 16 C 1.38814 * 119.99881 * 329.91266 * 14 13 12 17 17 N 1.31616 * 119.99998 * 341.57351 * 16 14 13 18 18 Si 1.86797 * 119.99730 * 161.57253 * 16 14 13 19 19 H 1.48503 * 109.47351 * 94.94540 * 18 16 14 20 20 H 1.48497 * 109.47402 * 214.94413 * 18 16 14 21 21 H 1.48505 * 109.47672 * 334.94343 * 18 16 14 22 22 C 1.46928 * 118.73431 * 53.60665 * 13 12 11 23 23 H 1.09000 * 109.58850 * 66.18595 * 22 13 12 24 24 C 1.53000 * 109.58565 * 186.60450 * 22 13 12 25 25 C 1.53038 * 109.46330 * 154.97014 * 9 8 6 26 26 N 1.31858 * 108.03874 * 359.56060 * 5 4 3 27 27 N 1.35843 * 126.08115 * 359.53312 * 3 2 1 28 28 C 1.46496 * 125.95031 * 359.96568 * 27 3 2 29 29 H 1.08994 * 109.47799 * 51.39878 * 1 2 3 30 30 H 1.09002 * 109.46978 * 171.40402 * 1 2 3 31 31 H 1.09006 * 109.46964 * 291.39614 * 1 2 3 32 32 H 1.07993 * 126.10717 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99380 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.50120 * 61.29374 * 11 9 8 35 35 H 1.08999 * 109.50157 * 181.39138 * 11 9 8 36 36 H 1.09007 * 109.59275 * 185.56960 * 12 11 9 37 37 H 1.09007 * 109.70868 * 65.21190 * 12 11 9 38 38 H 0.97000 * 119.99472 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.47770 * 179.29154 * 24 22 13 40 40 H 1.09002 * 109.47589 * 299.29532 * 24 22 13 41 41 H 1.09008 * 109.46850 * 59.28677 * 24 22 13 42 42 H 1.09001 * 109.49809 * 178.60626 * 25 9 8 43 43 H 1.09001 * 109.49840 * 298.70600 * 25 9 8 44 44 H 1.09002 * 109.46992 * 277.18323 * 28 27 3 45 45 H 1.09002 * 109.47668 * 37.18455 * 28 27 3 46 46 H 1.09004 * 109.46949 * 157.18391 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3842 1.4239 0.0036 5 6 3.5978 2.8183 0.0068 6 6 4.9108 3.4951 0.0147 7 8 5.9335 2.8378 0.0246 8 7 4.9752 4.8413 0.0056 9 6 6.2772 5.5126 0.0140 10 1 6.9917 4.9264 -0.5639 11 6 6.7736 5.6442 1.4557 12 6 5.7509 6.4388 2.2734 13 7 5.5023 7.7216 1.6016 14 6 5.6356 8.9027 2.2815 15 1 5.9335 9.7978 1.7558 16 6 5.3878 8.9494 3.6466 17 7 4.6914 7.9923 4.2221 18 14 6.0427 10.3707 4.6665 19 1 4.9915 11.4114 4.7980 20 1 6.4232 9.8784 6.0149 21 1 7.2342 10.9524 3.9977 22 6 5.1076 7.7129 0.1863 23 1 4.1244 7.2536 0.0840 24 6 5.0640 9.1479 -0.3428 25 6 6.1377 6.9038 -0.6080 26 7 2.4204 3.4117 -0.0045 27 7 1.4304 2.4210 -0.0089 28 6 -0.0164 2.6509 -0.0210 29 1 -0.3634 0.6411 -0.8030 30 1 -0.3633 -1.0161 -0.1536 31 1 -0.3633 0.3749 0.9569 32 1 4.1504 0.6628 0.0066 33 1 4.1592 5.3657 -0.0065 34 1 6.8951 4.6522 1.8907 35 1 7.7308 6.1656 1.4648 36 1 6.1443 6.6203 3.2737 37 1 4.8197 5.8765 2.3436 38 1 4.5179 8.0253 5.1759 39 1 4.7832 9.1385 -1.3959 40 1 4.3306 9.7219 0.2236 41 1 6.0471 9.6057 -0.2328 42 1 7.1009 7.4133 -0.5796 43 1 5.8064 6.8085 -1.6421 44 1 -0.3874 2.5775 -1.0433 45 1 -0.5086 1.9015 0.5988 46 1 -0.2296 3.6448 0.3725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947533938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:45 Heat of formation + Delta-G solvation = 48.426918 kcal Electronic energy + Delta-G solvation = -28174.788400 eV Core-core repulsion = 24296.379417 eV Total energy + Delta-G solvation = -3878.408983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70729 -39.62334 -38.44260 -37.43197 -34.23784 -33.62543 -32.28947 -31.32119 -30.23908 -29.44474 -28.11141 -26.62902 -26.27530 -24.93429 -23.43198 -21.93731 -21.58026 -20.59060 -20.04293 -18.57279 -18.28884 -16.95907 -16.39830 -16.37289 -15.78035 -15.34770 -15.24261 -14.97834 -14.84835 -14.44360 -14.08244 -13.94826 -13.77207 -13.64011 -13.37840 -13.12542 -13.02590 -12.72048 -12.39921 -11.80711 -11.72278 -11.54184 -11.38053 -11.14792 -10.98619 -10.86129 -10.63962 -10.59138 -10.36952 -10.11465 -10.04026 -9.81339 -9.62036 -9.28504 -9.23196 -8.54715 -8.51387 -8.41003 -6.57652 -5.74282 -3.16876 1.38052 1.99775 2.16269 2.64259 3.39239 3.47399 3.49457 3.51421 3.64480 4.06654 4.40237 4.51315 4.52927 4.73431 4.78053 4.86900 5.13727 5.20325 5.31874 5.38582 5.40987 5.50560 5.67465 5.72440 5.77439 5.83875 6.04685 6.17323 6.29362 6.32988 6.36462 6.42616 6.49909 6.62487 6.67427 6.81848 7.00200 7.06573 7.10334 7.11307 7.28434 7.41530 7.70617 7.87260 7.93460 8.50444 8.50811 9.25790 9.90253 10.48253 11.34014 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.003266 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.538022 B = 8571.187228 C = 9134.587452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.289 6.289 3 C 0.265 3.735 4 C -0.234 4.234 5 C 0.063 3.937 6 C 0.598 3.402 7 O -0.534 6.534 8 N -0.695 5.695 9 C 0.153 3.847 10 H 0.076 0.924 11 C -0.154 4.154 12 C 0.176 3.824 13 N -0.586 5.586 14 C -0.252 4.252 15 H 0.069 0.931 16 C 0.005 3.995 17 N -0.898 5.898 18 Si 0.897 3.103 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.167 3.833 23 H 0.021 0.979 24 C -0.136 4.136 25 C -0.139 4.139 26 N -0.243 5.243 27 N -0.394 5.394 28 C 0.077 3.923 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.165 0.835 33 H 0.408 0.592 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.020 0.980 38 H 0.252 0.748 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 -12.675 -10.757 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.195 6.195 3 C 0.098 3.902 4 C -0.264 4.264 5 C -0.105 4.105 6 C 0.380 3.620 7 O -0.409 6.409 8 N -0.347 5.347 9 C 0.049 3.951 10 H 0.094 0.906 11 C -0.194 4.194 12 C 0.051 3.949 13 N -0.309 5.309 14 C -0.381 4.381 15 H 0.086 0.914 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.726 3.274 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.060 3.940 23 H 0.039 0.961 24 C -0.194 4.194 25 C -0.178 4.178 26 N -0.074 5.074 27 N -0.191 5.191 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.182 0.818 33 H 0.245 0.755 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.760 -12.323 -10.579 18.949 hybrid contribution -0.245 0.196 0.758 0.820 sum -10.005 -12.127 -9.822 18.538 Atomic orbital electron populations 1.23643 0.78129 1.05159 1.01573 1.86298 1.21505 1.21684 1.90020 1.19552 0.91053 0.78892 1.00673 1.20331 0.91859 0.95649 1.18586 1.21978 0.92975 0.93007 1.02567 1.16852 0.85709 0.82374 0.77025 1.90775 1.34090 1.65326 1.50674 1.46043 1.10900 1.05361 1.72383 1.20964 0.83571 0.92688 0.97827 0.90592 1.22552 1.01070 1.00423 0.95339 1.20654 0.93970 0.84650 0.95656 1.44123 1.78667 1.02783 1.05365 1.19122 1.39446 0.88805 0.90761 0.91386 1.25073 0.98322 0.97606 0.98446 1.70067 1.39287 1.34522 1.10354 0.86382 0.78895 0.82127 0.79959 1.21612 1.21680 1.20434 1.20392 0.93488 0.93836 0.86252 0.96148 1.21793 1.02204 0.97285 0.98068 1.22368 1.02250 0.94906 0.98313 1.77813 0.95124 1.10804 1.23612 1.49072 1.06903 1.02914 1.60241 1.22506 0.74666 1.05806 1.03328 0.91763 0.87422 0.91822 0.81754 0.75504 0.92622 0.91592 0.90230 0.96230 0.93815 0.94354 0.91993 0.92671 0.90509 0.92515 0.90423 0.88767 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.42 101.05 0.95 1.00 16 2 O -0.29 -3.00 10.57 -19.05 -0.20 -3.20 16 3 C 0.26 3.40 7.78 -16.72 -0.13 3.27 16 4 C -0.23 -3.51 10.59 -39.46 -0.42 -3.93 16 5 C 0.06 1.04 7.09 -82.91 -0.59 0.46 16 6 C 0.60 10.92 7.79 -12.39 -0.10 10.83 16 7 O -0.53 -10.84 16.56 5.30 0.09 -10.75 16 8 N -0.70 -12.35 4.27 -54.75 -0.23 -12.59 16 9 C 0.15 2.75 2.78 -67.89 -0.19 2.56 16 10 H 0.08 1.34 7.57 -51.93 -0.39 0.94 16 11 C -0.15 -3.11 5.77 -26.63 -0.15 -3.26 16 12 C 0.18 4.24 5.04 -3.72 -0.02 4.22 16 13 N -0.59 -14.17 2.98 -164.78 -0.49 -14.66 16 14 C -0.25 -6.68 8.55 -15.06 -0.13 -6.81 16 15 H 0.07 1.76 6.26 -52.49 -0.33 1.43 16 16 C 0.00 0.12 4.86 -17.43 -0.08 0.04 16 17 N -0.90 -26.07 11.45 55.49 0.64 -25.44 16 18 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.17 3.34 3.20 -67.60 -0.22 3.12 16 23 H 0.02 0.43 6.64 -51.93 -0.34 0.08 16 24 C -0.14 -2.50 7.95 37.16 0.30 -2.20 16 25 C -0.14 -2.37 5.07 -26.61 -0.13 -2.50 16 26 N -0.24 -3.82 12.26 33.34 0.41 -3.42 16 27 N -0.39 -4.89 4.04 -68.18 -0.28 -5.17 16 28 C 0.08 0.56 9.58 59.84 0.57 1.13 16 29 H 0.06 0.26 5.88 -51.93 -0.31 -0.04 16 30 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.27 6.47 -51.93 -0.34 -0.06 16 32 H 0.16 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.41 7.25 6.56 -40.82 -0.27 6.99 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 2.16 6.27 -51.93 -0.33 1.83 16 37 H 0.02 0.50 7.75 -51.93 -0.40 0.10 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 41 H 0.05 1.02 7.40 -51.92 -0.38 0.64 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 0.40 7.56 -51.93 -0.39 0.00 16 45 H 0.09 0.43 4.71 -51.93 -0.24 0.19 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -33.19 362.59 -6.61 -39.80 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.64 Total: 5.44 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.34 Total: 7.93 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.04 Total: -61.26 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.11 Total: -13.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.19 -6.61 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947533938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.228 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds