Wall clock time and date at job start Tue Mar 31 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35779 * 116.99730 * 2 1 4 4 C 1.35585 * 126.08049 * 179.81085 * 3 2 1 5 5 C 1.41067 * 107.79270 * 180.19760 * 4 3 2 6 6 C 1.47719 * 125.98075 * 179.83241 * 5 4 3 7 7 O 1.21578 * 119.99875 * 359.70696 * 6 5 4 8 8 N 1.34774 * 120.00421 * 179.43878 * 6 5 4 9 9 C 1.46493 * 120.00525 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46144 * 34.99784 * 9 8 6 11 11 C 1.53041 * 109.46061 * 275.02856 * 9 8 6 12 12 C 1.53163 * 109.32626 * 301.35523 * 11 9 8 13 13 N 1.46929 * 108.77016 * 305.35591 * 12 11 9 14 14 C 1.36933 * 120.63155 * 233.58744 * 13 12 11 15 15 H 1.08000 * 120.00174 * 149.91765 * 14 13 12 16 16 C 1.38814 * 119.99881 * 329.91266 * 14 13 12 17 17 N 1.31616 * 119.99998 * 341.57351 * 16 14 13 18 18 Si 1.86797 * 119.99730 * 161.57253 * 16 14 13 19 19 H 1.48503 * 109.47351 * 94.94540 * 18 16 14 20 20 H 1.48497 * 109.47402 * 214.94413 * 18 16 14 21 21 H 1.48505 * 109.47672 * 334.94343 * 18 16 14 22 22 C 1.46928 * 118.73431 * 53.60665 * 13 12 11 23 23 H 1.09000 * 109.58850 * 66.18595 * 22 13 12 24 24 C 1.53000 * 109.58565 * 186.60450 * 22 13 12 25 25 C 1.53038 * 109.46330 * 154.97014 * 9 8 6 26 26 N 1.31858 * 108.03874 * 359.56060 * 5 4 3 27 27 N 1.35843 * 126.08115 * 359.53312 * 3 2 1 28 28 C 1.46496 * 125.95031 * 359.96568 * 27 3 2 29 29 H 1.08994 * 109.47799 * 51.39878 * 1 2 3 30 30 H 1.09002 * 109.46978 * 171.40402 * 1 2 3 31 31 H 1.09006 * 109.46964 * 291.39614 * 1 2 3 32 32 H 1.07993 * 126.10717 * 0.02562 * 4 3 2 33 33 H 0.96999 * 119.99380 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.50120 * 61.29374 * 11 9 8 35 35 H 1.08999 * 109.50157 * 181.39138 * 11 9 8 36 36 H 1.09007 * 109.59275 * 185.56960 * 12 11 9 37 37 H 1.09007 * 109.70868 * 65.21190 * 12 11 9 38 38 H 0.97000 * 119.99472 * 180.02562 * 17 16 14 39 39 H 1.08993 * 109.47770 * 179.29154 * 24 22 13 40 40 H 1.09002 * 109.47589 * 299.29532 * 24 22 13 41 41 H 1.09008 * 109.46850 * 59.28677 * 24 22 13 42 42 H 1.09001 * 109.49809 * 178.60626 * 25 9 8 43 43 H 1.09001 * 109.49840 * 298.70600 * 25 9 8 44 44 H 1.09002 * 109.46992 * 277.18323 * 28 27 3 45 45 H 1.09002 * 109.47668 * 37.18455 * 28 27 3 46 46 H 1.09004 * 109.46949 * 157.18391 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.3842 1.4239 0.0036 5 6 3.5978 2.8183 0.0068 6 6 4.9108 3.4951 0.0147 7 8 5.9335 2.8378 0.0246 8 7 4.9752 4.8413 0.0056 9 6 6.2772 5.5126 0.0140 10 1 6.9917 4.9264 -0.5639 11 6 6.7736 5.6442 1.4557 12 6 5.7509 6.4388 2.2734 13 7 5.5023 7.7216 1.6016 14 6 5.6356 8.9027 2.2815 15 1 5.9335 9.7978 1.7558 16 6 5.3878 8.9494 3.6466 17 7 4.6914 7.9923 4.2221 18 14 6.0427 10.3707 4.6665 19 1 4.9915 11.4114 4.7980 20 1 6.4232 9.8784 6.0149 21 1 7.2342 10.9524 3.9977 22 6 5.1076 7.7129 0.1863 23 1 4.1244 7.2536 0.0840 24 6 5.0640 9.1479 -0.3428 25 6 6.1377 6.9038 -0.6080 26 7 2.4204 3.4117 -0.0045 27 7 1.4304 2.4210 -0.0089 28 6 -0.0164 2.6509 -0.0210 29 1 -0.3634 0.6411 -0.8030 30 1 -0.3633 -1.0161 -0.1536 31 1 -0.3633 0.3749 0.9569 32 1 4.1504 0.6628 0.0066 33 1 4.1592 5.3657 -0.0065 34 1 6.8951 4.6522 1.8907 35 1 7.7308 6.1656 1.4648 36 1 6.1443 6.6203 3.2737 37 1 4.8197 5.8765 2.3436 38 1 4.5179 8.0253 5.1759 39 1 4.7832 9.1385 -1.3959 40 1 4.3306 9.7219 0.2236 41 1 6.0471 9.6057 -0.2328 42 1 7.1009 7.4133 -0.5796 43 1 5.8064 6.8085 -1.6421 44 1 -0.3874 2.5775 -1.0433 45 1 -0.5086 1.9015 0.5988 46 1 -0.2296 3.6448 0.3725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947533938.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:44 Heat of formation + Delta-G solvation = 24.309586 kcal Electronic energy + Delta-G solvation = -28175.834206 eV Core-core repulsion = 24296.379417 eV Total energy + Delta-G solvation = -3879.454789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.72338 -41.04188 -39.46311 -38.90670 -35.91864 -34.54210 -34.06317 -32.89641 -31.64418 -30.83591 -28.97360 -28.00624 -27.24100 -26.74727 -24.70068 -23.68402 -22.54024 -22.21933 -21.33887 -20.20281 -19.31113 -18.23527 -17.74055 -17.52887 -17.06590 -16.83009 -16.36447 -16.25868 -16.10848 -15.77353 -15.51595 -15.34120 -15.18947 -14.73122 -14.64611 -14.45237 -14.14059 -13.96237 -13.89764 -13.33693 -13.19013 -12.83605 -12.65569 -12.46255 -12.41422 -12.33206 -12.28646 -12.15718 -11.97862 -11.81230 -11.69396 -11.39728 -11.26994 -10.96366 -10.48877 -10.29315 -10.00121 -9.54625 -8.57393 -7.81247 -5.25746 0.21042 1.04574 1.10025 1.46762 1.49911 1.58628 1.80298 2.26662 2.34294 2.54858 3.10339 3.33757 3.63972 3.78422 3.95144 4.00773 4.09836 4.15589 4.21882 4.26823 4.29958 4.37128 4.45265 4.51702 4.63023 4.66549 4.69204 4.72319 4.80280 4.94370 4.98121 5.00137 5.05386 5.13333 5.18335 5.23100 5.42076 5.53454 5.53795 5.57935 5.75477 5.77203 6.12226 6.28123 6.46102 6.54577 7.09016 7.20706 7.93435 8.46638 9.25279 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016432 B = 0.003266 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.538022 B = 8571.187228 C = 9134.587452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.297 6.297 3 C 0.281 3.719 4 C -0.261 4.261 5 C 0.041 3.959 6 C 0.597 3.403 7 O -0.560 6.560 8 N -0.693 5.693 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.142 4.142 12 C 0.190 3.810 13 N -0.600 5.600 14 C -0.248 4.248 15 H 0.076 0.924 16 C -0.053 4.053 17 N -0.935 5.935 18 Si 0.958 3.042 19 H -0.288 1.288 20 H -0.299 1.299 21 H -0.268 1.268 22 C 0.159 3.841 23 H 0.016 0.984 24 C -0.129 4.129 25 C -0.125 4.125 26 N -0.265 5.265 27 N -0.384 5.384 28 C 0.062 3.938 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.408 0.592 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.041 0.959 37 H -0.007 1.007 38 H 0.245 0.755 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 -12.810 -12.755 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.203 6.203 3 C 0.113 3.887 4 C -0.292 4.292 5 C -0.125 4.125 6 C 0.381 3.619 7 O -0.438 6.438 8 N -0.343 5.343 9 C 0.053 3.947 10 H 0.106 0.894 11 C -0.182 4.182 12 C 0.064 3.936 13 N -0.324 5.324 14 C -0.378 4.378 15 H 0.094 0.906 16 C -0.248 4.248 17 N -0.582 5.582 18 Si 0.787 3.213 19 H -0.215 1.215 20 H -0.226 1.226 21 H -0.193 1.193 22 C 0.053 3.947 23 H 0.034 0.966 24 C -0.186 4.186 25 C -0.164 4.164 26 N -0.097 5.097 27 N -0.182 5.182 28 C -0.077 4.077 29 H 0.100 0.900 30 H 0.152 0.848 31 H 0.095 0.905 32 H 0.181 0.819 33 H 0.245 0.755 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.011 0.989 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.143 0.857 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.977 -12.446 -12.618 20.847 hybrid contribution -0.070 0.138 1.332 1.341 sum -11.047 -12.308 -11.286 20.023 Atomic orbital electron populations 1.24102 0.75278 1.07539 1.03046 1.86332 1.24426 1.20031 1.89527 1.19446 0.90669 0.79883 0.98720 1.20412 0.93298 0.95091 1.20356 1.21736 0.92580 0.93690 1.04532 1.17109 0.86247 0.82327 0.76178 1.90742 1.35231 1.65806 1.51978 1.46010 1.10761 1.05348 1.72210 1.20936 0.83947 0.93732 0.96113 0.89431 1.22375 1.00089 0.99196 0.96514 1.20322 0.93490 0.85103 0.94690 1.44357 1.79010 1.01997 1.07028 1.19481 1.37612 0.89712 0.91028 0.90601 1.25792 0.99242 1.00015 0.99736 1.70223 1.41353 1.36652 1.09955 0.85407 0.78489 0.79424 0.78014 1.21461 1.22619 1.19275 1.20647 0.94124 0.95702 0.84184 0.96622 1.21724 1.01485 0.95451 0.99966 1.22247 1.01581 0.93288 0.99277 1.77709 0.95493 1.12205 1.24294 1.49413 1.08127 1.02192 1.58496 1.23045 0.71858 1.06889 1.05863 0.90012 0.84820 0.90480 0.81947 0.75506 0.93382 0.91065 0.94017 0.98875 0.94621 0.90554 0.94186 0.92857 0.89859 0.89219 0.87655 0.85739 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.05 9.42 113.37 1.07 1.02 16 2 O -0.30 -5.55 10.57 -91.07 -0.96 -6.51 16 3 C 0.28 6.92 7.78 83.46 0.65 7.57 16 4 C -0.26 -7.94 10.59 22.35 0.24 -7.70 16 5 C 0.04 1.38 7.09 42.34 0.30 1.68 16 6 C 0.60 22.27 7.79 86.75 0.68 22.95 16 7 O -0.56 -23.25 16.56 -3.96 -0.07 -23.32 16 8 N -0.69 -24.66 4.27 -445.41 -1.90 -26.56 16 9 C 0.16 5.49 2.78 45.02 0.13 5.62 16 10 H 0.09 2.95 7.57 -2.39 -0.02 2.93 16 11 C -0.14 -5.81 5.77 30.66 0.18 -5.63 16 12 C 0.19 9.45 5.04 86.35 0.43 9.88 16 13 N -0.60 -29.22 2.98 -675.26 -2.01 -31.23 16 14 C -0.25 -13.22 8.55 84.03 0.72 -12.50 16 15 H 0.08 3.87 6.26 -2.91 -0.02 3.86 16 16 C -0.05 -2.95 4.86 84.86 0.41 -2.54 16 17 N -0.94 -56.29 11.45 21.65 0.25 -56.04 16 18 Si 0.96 45.18 29.59 68.60 2.03 47.21 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C 0.16 6.16 3.20 44.97 0.14 6.30 16 23 H 0.02 0.65 6.64 -2.39 -0.02 0.63 16 24 C -0.13 -4.45 7.95 71.98 0.57 -3.87 16 25 C -0.12 -3.96 5.07 30.67 0.16 -3.80 16 26 N -0.26 -8.32 12.26 -48.42 -0.59 -8.91 16 27 N -0.38 -8.99 4.04 -480.56 -1.94 -10.93 16 28 C 0.06 0.71 9.58 127.77 1.22 1.94 16 29 H 0.08 0.34 5.88 -2.39 -0.01 0.32 16 30 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.38 6.47 -2.38 -0.02 0.36 16 32 H 0.16 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.41 14.57 6.56 -92.71 -0.61 13.96 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.82 8.14 -2.39 -0.02 2.81 16 36 H 0.04 2.37 6.27 -2.38 -0.01 2.35 16 37 H -0.01 -0.37 7.75 -2.38 -0.02 -0.39 16 38 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.54 7.67 -2.39 -0.02 1.52 16 41 H 0.05 1.85 7.40 -2.38 -0.02 1.83 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.11 0.69 7.56 -2.39 -0.02 0.67 16 45 H 0.12 0.69 4.71 -2.39 -0.01 0.68 16 46 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.80 362.59 2.10 -72.70 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.40 Total: 22.67 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 6.89 Total: 20.92 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -6.20 Total: -133.67 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -1.03 Total: -29.83 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.80 2.10 -72.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947533938.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.010 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds