Wall clock time and date at job start Tue Mar 31 2020 14:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35852 * 117.00536 * 2 1 4 4 N 1.30813 * 126.05128 * 0.02562 * 3 2 1 5 5 N 1.39924 * 108.87574 * 179.97438 * 4 3 2 6 6 C 1.46505 * 125.68780 * 179.97438 * 5 4 3 7 7 C 1.34164 * 108.62209 * 359.73190 * 5 4 3 8 8 C 1.38131 * 107.50908 * 0.43050 * 7 5 4 9 9 C 1.47252 * 126.44786 * 179.83630 * 8 7 5 10 10 O 1.21611 * 120.00129 * 179.68561 * 9 8 7 11 11 N 1.34781 * 119.99638 * 359.68531 * 9 8 7 12 12 C 1.46497 * 119.99901 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.45658 * 325.02942 * 12 11 9 14 14 C 1.53043 * 109.45965 * 84.99888 * 12 11 9 15 15 C 1.53193 * 109.30963 * 58.65915 * 14 12 11 16 16 N 1.46924 * 108.77570 * 54.63298 * 15 14 12 17 17 C 1.36942 * 120.62759 * 126.37031 * 16 15 14 18 18 H 1.07996 * 119.99665 * 209.86526 * 17 16 15 19 19 C 1.38804 * 119.99991 * 29.86387 * 17 16 15 20 20 N 1.31624 * 120.00375 * 15.52866 * 19 17 16 21 21 Si 1.86799 * 119.99819 * 195.53134 * 19 17 16 22 22 H 1.48504 * 109.47127 * 269.99991 * 21 19 17 23 23 H 1.48503 * 109.47303 * 29.99850 * 21 19 17 24 24 H 1.48501 * 109.47239 * 149.99924 * 21 19 17 25 25 C 1.46923 * 118.74187 * 306.64404 * 16 15 14 26 26 H 1.09004 * 109.58631 * 293.57127 * 25 16 15 27 27 C 1.52996 * 109.58910 * 173.14615 * 25 16 15 28 28 C 1.52760 * 109.00965 * 53.30656 * 25 16 15 29 29 H 1.08995 * 109.46722 * 299.99842 * 1 2 3 30 30 H 1.08998 * 109.47223 * 59.99569 * 1 2 3 31 31 H 1.09003 * 109.47075 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46521 * 90.02328 * 6 5 4 33 33 H 1.09000 * 109.46800 * 210.02894 * 6 5 4 34 34 H 1.09005 * 109.46629 * 330.02955 * 6 5 4 35 35 H 1.08001 * 126.24045 * 180.26356 * 7 5 4 36 36 H 0.97000 * 120.00157 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.49796 * 298.70481 * 14 12 11 38 38 H 1.09000 * 109.52406 * 178.62698 * 14 12 11 39 39 H 1.08998 * 109.58588 * 294.84653 * 15 14 12 40 40 H 1.08997 * 109.70252 * 174.49039 * 15 14 12 41 41 H 0.97001 * 119.99912 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.47177 * 59.99973 * 27 25 16 43 43 H 1.08998 * 109.46969 * 180.02562 * 27 25 16 44 44 H 1.08997 * 109.47304 * 299.99802 * 27 25 16 45 45 H 1.08997 * 109.56594 * 185.55354 * 28 25 16 46 46 H 1.09005 * 109.35800 * 65.49870 * 28 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3765 0.0005 5 7 2.4283 3.3800 0.0009 6 6 2.1706 4.8222 0.0009 7 6 3.6386 2.8012 0.0066 8 6 3.4452 1.4335 0.0000 9 6 4.4956 0.4014 -0.0005 10 8 4.1912 -0.7760 -0.0010 11 7 5.7943 0.7618 -0.0005 12 6 6.8393 -0.2649 -0.0004 13 1 6.5080 -1.1201 0.5887 14 6 7.1149 -0.7120 -1.4379 15 6 7.5472 0.4988 -2.2710 16 7 8.6898 1.1439 -1.6100 17 6 9.8515 1.3782 -2.2963 18 1 10.7960 1.3849 -1.7726 19 6 9.8150 1.6072 -3.6648 20 7 8.6750 1.9028 -4.2525 21 14 11.3839 1.4959 -4.6725 22 1 12.0386 2.8281 -4.7181 23 1 12.3050 0.5129 -4.0475 24 1 11.0556 1.0582 -6.0530 25 6 8.5646 1.5273 -0.1972 26 1 7.8228 2.3198 -0.0980 27 6 9.9170 2.0188 0.3227 28 6 8.1190 0.3101 0.6111 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.1068 5.1797 1.0287 33 1 2.9827 5.3364 -0.5130 34 1 1.2304 5.0232 -0.5128 35 1 4.5904 3.3115 0.0123 36 1 6.0371 1.7009 0.0002 37 1 6.2093 -1.1428 -1.8649 38 1 7.9094 -1.4583 -1.4413 39 1 6.7207 1.2057 -2.3443 40 1 7.8388 0.1727 -3.2693 41 1 8.6495 2.0624 -5.2090 42 1 10.2382 2.8822 -0.2599 43 1 9.8220 2.3022 1.3709 44 1 10.6543 1.2217 0.2277 45 1 7.9281 0.6067 1.6424 46 1 8.9043 -0.4456 0.5888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947615212.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:48 Heat of formation + Delta-G solvation = 34.357642 kcal Electronic energy + Delta-G solvation = -28373.334039 eV Core-core repulsion = 24494.314966 eV Total energy + Delta-G solvation = -3879.019072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50465 -39.30342 -38.28282 -37.36207 -34.13348 -32.99301 -32.32702 -31.46322 -30.29711 -29.25662 -27.98342 -26.45735 -26.17976 -24.91530 -22.95359 -21.95101 -21.07410 -20.60804 -20.22425 -18.50152 -17.99486 -16.89535 -16.33311 -16.30811 -15.76572 -15.25910 -15.12234 -15.07403 -14.78639 -14.37127 -13.90632 -13.83801 -13.69170 -13.20593 -12.98085 -12.93101 -12.83116 -12.54170 -12.32665 -12.00766 -11.77840 -11.39924 -11.28076 -11.16268 -10.98376 -10.89193 -10.65161 -10.59177 -10.37814 -10.09603 -10.05547 -9.61799 -9.42697 -9.24611 -9.19254 -8.60029 -8.44580 -8.32358 -6.60195 -5.76402 -3.20335 1.46229 2.08898 2.30330 3.18410 3.37313 3.45436 3.47065 3.73306 3.84319 4.28499 4.50019 4.59907 4.87976 4.97002 5.12768 5.16000 5.17147 5.31781 5.37000 5.38852 5.41606 5.46000 5.64075 5.70620 5.72082 5.77169 6.07097 6.16488 6.30825 6.33900 6.44967 6.48588 6.63741 6.65284 6.73572 6.87668 6.99584 7.06916 7.15904 7.16714 7.43925 7.54770 7.73438 7.83886 8.07225 8.48446 8.78821 9.23990 9.87841 10.44770 11.31684 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003450 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.296820 B = 8112.852761 C = 8409.476625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.266 6.266 3 C 0.315 3.685 4 N -0.356 5.356 5 N -0.351 5.351 6 C 0.100 3.900 7 C 0.125 3.875 8 C -0.286 4.286 9 C 0.592 3.408 10 O -0.541 6.541 11 N -0.713 5.713 12 C 0.157 3.843 13 H 0.073 0.927 14 C -0.154 4.154 15 C 0.177 3.823 16 N -0.587 5.587 17 C -0.250 4.250 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.898 3.102 22 H -0.288 1.288 23 H -0.280 1.280 24 H -0.291 1.291 25 C 0.170 3.830 26 H 0.018 0.982 27 C -0.137 4.137 28 C -0.139 4.139 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.395 0.605 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.083 0.917 41 H 0.252 0.748 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 4.826 10.791 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.109 3.891 4 N -0.197 5.197 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.027 4.027 8 C -0.301 4.301 9 C 0.379 3.621 10 O -0.418 6.418 11 N -0.365 5.365 12 C 0.053 3.947 13 H 0.091 0.909 14 C -0.194 4.194 15 C 0.051 3.949 16 N -0.310 5.310 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.728 3.272 22 H -0.215 1.215 23 H -0.205 1.205 24 H -0.217 1.217 25 C 0.063 3.937 26 H 0.035 0.965 27 C -0.195 4.195 28 C -0.179 4.179 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.207 0.793 36 H 0.230 0.770 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.036 0.964 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.437 4.398 10.603 17.673 hybrid contribution 1.353 0.278 -0.736 1.565 sum -12.084 4.676 9.867 16.287 Atomic orbital electron populations 1.23005 0.78066 1.03628 1.01808 1.86523 1.21477 1.20489 1.88303 1.20398 0.90155 0.85151 0.93369 1.77261 1.13271 0.94609 1.34512 1.47638 1.03166 1.06427 1.55982 1.22006 1.04636 0.73617 1.03776 1.23121 0.91220 0.92266 0.96075 1.19803 0.91901 0.92689 1.25693 1.17027 0.81627 0.87365 0.76108 1.90765 1.82331 1.18031 1.50707 1.45923 1.05000 1.10365 1.75221 1.20828 0.86241 0.90089 0.97510 0.90937 1.22550 1.00285 1.00898 0.95697 1.20684 0.88507 0.89808 0.95861 1.44120 1.13494 1.67776 1.05646 1.19138 0.85771 1.42639 0.90449 0.91414 1.25065 0.96457 0.99734 0.98202 1.70022 1.24532 1.50209 1.09851 0.86372 0.83255 0.77789 0.79775 1.21529 1.20520 1.21678 1.20275 0.94864 0.92290 0.86281 0.96501 1.21810 0.97801 1.01740 0.98118 1.22295 0.96578 1.00732 0.98256 0.92656 0.92548 0.88139 0.90302 0.88647 0.88958 0.79270 0.76972 0.92701 0.91960 0.96366 0.89898 0.93779 0.91984 0.94364 0.92709 0.92611 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.70 101.05 1.08 1.42 16 2 O -0.27 -4.32 9.98 -24.62 -0.25 -4.56 16 3 C 0.31 5.09 7.85 -16.66 -0.13 4.95 16 4 N -0.36 -5.05 11.90 30.79 0.37 -4.68 16 5 N -0.35 -3.96 3.98 -67.59 -0.27 -4.22 16 6 C 0.10 0.61 11.44 59.85 0.68 1.30 16 7 C 0.13 1.49 10.98 -16.57 -0.18 1.31 16 8 C -0.29 -4.54 6.14 -104.95 -0.64 -5.18 16 9 C 0.59 10.79 7.77 -12.60 -0.10 10.70 16 10 O -0.54 -11.75 16.09 -0.08 0.00 -11.75 16 11 N -0.71 -11.88 4.25 -54.90 -0.23 -12.11 16 12 C 0.16 2.80 2.78 -67.89 -0.19 2.61 16 13 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 14 C -0.15 -3.13 5.77 -26.61 -0.15 -3.29 16 15 C 0.18 4.15 5.03 -3.71 -0.02 4.14 16 16 N -0.59 -13.71 2.99 -165.04 -0.49 -14.21 16 17 C -0.25 -6.48 8.57 -15.06 -0.13 -6.61 16 18 H 0.07 1.72 6.23 -52.49 -0.33 1.39 16 19 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 20 N -0.90 -25.52 11.23 55.49 0.62 -24.90 16 21 Si 0.90 21.27 29.58 -169.99 -5.03 16.24 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.17 3.20 3.19 -67.83 -0.22 2.98 16 26 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 27 C -0.14 -2.39 7.94 37.16 0.29 -2.09 16 28 C -0.14 -2.29 5.05 -26.83 -0.14 -2.43 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.19 1.60 7.46 -52.49 -0.39 1.20 16 36 H 0.40 5.91 5.80 -40.82 -0.24 5.67 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 40 H 0.08 2.23 6.14 -51.93 -0.32 1.91 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.06 1.17 7.62 -51.93 -0.40 0.77 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.98 7.44 -51.93 -0.39 0.60 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -34.55 369.99 -6.61 -41.16 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.98 Total: 3.63 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.08 Total: 9.83 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.01 Total: -60.12 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.25 Total: -16.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.55 -6.61 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947615212.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.519 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds