Wall clock time and date at job start Tue Mar 31 2020 14:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35846 * 117.00308 * 2 1 4 4 N 1.30813 * 126.05600 * 359.97438 * 3 2 1 5 5 N 1.39922 * 108.87824 * 180.02562 * 4 3 2 6 6 C 1.46506 * 125.68341 * 179.97438 * 5 4 3 7 7 C 1.34161 * 108.62164 * 359.75264 * 5 4 3 8 8 C 1.38128 * 107.50939 * 0.39733 * 7 5 4 9 9 C 1.47250 * 126.44681 * 179.86986 * 8 7 5 10 10 O 1.21624 * 120.00146 * 179.68139 * 9 8 7 11 11 N 1.34779 * 119.99897 * 359.68759 * 9 8 7 12 12 C 1.46501 * 119.99717 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.46197 * 325.02564 * 12 11 9 14 14 C 1.53044 * 109.46130 * 84.99949 * 12 11 9 15 15 C 1.53189 * 109.31349 * 181.36988 * 14 12 11 16 16 N 1.46926 * 108.77454 * 305.36694 * 15 14 12 17 17 C 1.36940 * 120.62842 * 233.58851 * 16 15 14 18 18 H 1.07996 * 119.99956 * 150.93827 * 17 16 15 19 19 C 1.38815 * 119.99670 * 330.93579 * 17 16 15 20 20 N 1.31617 * 120.00275 * 335.85909 * 19 17 16 21 21 Si 1.86808 * 119.99539 * 155.85786 * 19 17 16 22 22 H 1.48500 * 109.46781 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.46894 * 300.00083 * 21 19 17 24 24 H 1.48495 * 109.46925 * 60.00359 * 21 19 17 25 25 C 1.46923 * 118.74097 * 53.85812 * 16 15 14 26 26 H 1.09005 * 109.58626 * 65.93043 * 25 16 15 27 27 C 1.53003 * 109.58578 * 186.35427 * 25 16 15 28 28 C 1.53039 * 109.44857 * 205.05944 * 12 11 9 29 29 H 1.08998 * 109.47257 * 300.00179 * 1 2 3 30 30 H 1.08993 * 109.47200 * 60.00244 * 1 2 3 31 31 H 1.09005 * 109.47468 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46970 * 90.02932 * 6 5 4 33 33 H 1.09002 * 109.46384 * 210.02482 * 6 5 4 34 34 H 1.08998 * 109.47056 * 330.02353 * 6 5 4 35 35 H 1.08008 * 126.24105 * 180.26041 * 7 5 4 36 36 H 0.97001 * 119.99699 * 0.02562 * 11 9 8 37 37 H 1.09004 * 109.49423 * 61.41714 * 14 12 11 38 38 H 1.08996 * 109.52041 * 301.33898 * 14 12 11 39 39 H 1.08997 * 109.58310 * 185.57933 * 15 14 12 40 40 H 1.08997 * 109.70309 * 65.21893 * 15 14 12 41 41 H 0.96997 * 119.99788 * 354.30056 * 20 19 17 42 42 H 1.08996 * 109.47419 * 60.00356 * 27 25 16 43 43 H 1.09002 * 109.46766 * 180.02562 * 27 25 16 44 44 H 1.09001 * 109.46882 * 299.99661 * 27 25 16 45 45 H 1.09005 * 109.49713 * 298.58003 * 28 12 11 46 46 H 1.09003 * 109.49407 * 58.66972 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3765 -0.0005 5 7 2.4283 3.3800 -0.0009 6 6 2.1705 4.8222 -0.0020 7 6 3.6386 2.8012 0.0048 8 6 3.4452 1.4335 -0.0002 9 6 4.4955 0.4015 0.0006 10 8 4.1911 -0.7760 0.0015 11 7 5.7943 0.7618 0.0003 12 6 6.8392 -0.2650 0.0016 13 1 6.5080 -1.1195 0.5917 14 6 7.1150 -0.7138 -1.4353 15 6 8.1835 -1.8115 -1.4271 16 7 9.3670 -1.3140 -0.7126 17 6 10.6036 -1.3522 -1.2997 18 1 11.3500 -0.6179 -1.0350 19 6 10.8977 -2.3349 -2.2350 20 7 10.2331 -3.4709 -2.2272 21 14 12.2369 -2.0449 -3.5047 22 1 12.3543 -3.2377 -4.3814 23 1 11.8900 -0.8584 -4.3277 24 1 13.5302 -1.8078 -2.8147 25 6 9.1996 -0.7802 0.6460 26 1 8.8928 -1.5816 1.3182 27 6 10.5220 -0.1805 1.1280 28 6 8.1188 0.3110 0.6124 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 2.1067 5.1806 1.0253 33 1 2.9826 5.3359 -0.5164 34 1 1.2304 5.0228 -0.5159 35 1 4.5904 3.3116 0.0100 36 1 6.0370 1.7009 0.0000 37 1 7.4699 0.1351 -2.0197 38 1 6.1978 -1.1021 -1.8779 39 1 8.4549 -2.0648 -2.4519 40 1 7.7971 -2.6966 -0.9219 41 1 9.5964 -3.6554 -1.5191 42 1 10.8220 0.6244 0.4570 43 1 10.3958 0.2145 2.1361 44 1 11.2905 -0.9535 1.1346 45 1 8.4643 1.1503 0.0087 46 1 7.9159 0.6518 1.6277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947615213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:50 Heat of formation + Delta-G solvation = 0.736631 kcal Electronic energy + Delta-G solvation = -27727.722286 eV Core-core repulsion = 23847.245297 eV Total energy + Delta-G solvation = -3880.476989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.55228 -40.68473 -39.36444 -39.17183 -36.15937 -34.35712 -33.87221 -33.12221 -31.76802 -30.56797 -28.84959 -28.01834 -27.22321 -26.45390 -24.19982 -23.53740 -22.45259 -21.88988 -21.29680 -20.87180 -19.21320 -18.79253 -17.97698 -17.36983 -17.05941 -16.76316 -16.40583 -16.07406 -16.02835 -15.88493 -15.52901 -15.39773 -15.13589 -14.92843 -14.74686 -14.23891 -13.99475 -13.53071 -13.49047 -13.42579 -13.00557 -12.88196 -12.73479 -12.65217 -12.35855 -12.29072 -12.17959 -11.97446 -11.92829 -11.84629 -11.73299 -11.56754 -11.16410 -10.84160 -10.41364 -10.27136 -10.03131 -9.51443 -8.87428 -8.14741 -5.32669 0.47157 1.09141 1.25622 1.61033 1.69393 1.86949 2.11995 2.40565 2.45435 2.71231 3.28868 3.36769 3.51916 3.76108 3.85057 4.01447 4.19371 4.21248 4.26529 4.29187 4.31489 4.31883 4.49770 4.51765 4.52174 4.59152 4.63083 4.67354 4.70466 4.78076 4.80641 4.91399 5.04167 5.06316 5.10002 5.20987 5.26395 5.47130 5.56176 5.57701 5.85064 5.98595 6.13336 6.45089 6.47066 6.74206 7.12202 7.40829 7.86014 8.32292 9.09331 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019887 B = 0.002808 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.582887 B = 9969.441675 C =10416.924099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.290 3.710 4 N -0.370 5.370 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.158 3.842 8 C -0.332 4.332 9 C 0.588 3.412 10 O -0.590 6.590 11 N -0.704 5.704 12 C 0.166 3.834 13 H 0.051 0.949 14 C -0.125 4.125 15 C 0.163 3.837 16 N -0.610 5.610 17 C -0.338 4.338 18 H 0.069 0.931 19 C -0.086 4.086 20 N -0.953 5.953 21 Si 1.114 2.886 22 H -0.300 1.300 23 H -0.278 1.278 24 H -0.273 1.273 25 C 0.158 3.842 26 H 0.008 0.992 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.094 0.906 35 H 0.244 0.756 36 H 0.414 0.586 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.044 0.956 40 H -0.010 1.010 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.081 0.919 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 23.345 6.889 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.086 3.914 4 N -0.211 5.211 5 N -0.120 5.120 6 C -0.051 4.051 7 C 0.003 3.997 8 C -0.347 4.347 9 C 0.378 3.622 10 O -0.471 6.471 11 N -0.356 5.356 12 C 0.061 3.939 13 H 0.069 0.931 14 C -0.165 4.165 15 C 0.036 3.964 16 N -0.335 5.335 17 C -0.468 4.468 18 H 0.087 0.913 19 C -0.281 4.281 20 N -0.596 5.596 21 Si 0.939 3.061 22 H -0.227 1.227 23 H -0.204 1.204 24 H -0.199 1.199 25 C 0.052 3.948 26 H 0.025 0.975 27 C -0.180 4.180 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.260 0.740 36 H 0.251 0.749 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.008 0.992 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.100 0.900 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.091 22.315 5.582 28.072 hybrid contribution -0.446 -0.414 1.188 1.334 sum -16.537 21.901 6.770 28.266 Atomic orbital electron populations 1.23218 0.75991 1.05108 1.02366 1.86470 1.23841 1.21804 1.88380 1.20762 0.90900 0.85476 0.94268 1.77261 1.14467 0.94652 1.34718 1.48199 1.02698 1.07721 1.53372 1.22534 1.06333 0.70451 1.05772 1.23698 0.92917 0.90325 0.92736 1.19736 0.90833 0.94103 1.30024 1.17531 0.82425 0.87354 0.74935 1.90789 1.83048 1.20720 1.52535 1.45670 1.04043 1.10462 1.75432 1.20573 0.87379 0.90697 0.95293 0.93102 1.22204 0.97395 0.99440 0.97489 1.20640 0.86839 0.92926 0.95952 1.44518 1.03180 1.73446 1.12343 1.20260 0.92327 1.10578 1.23654 0.91304 1.27214 1.04668 0.91557 1.04680 1.70893 1.29373 1.22771 1.36531 0.82875 0.73660 0.75182 0.74424 1.22691 1.20422 1.19862 1.20756 0.95335 0.93373 0.85287 0.97460 1.21667 0.95785 1.00043 1.00502 1.22229 0.92697 0.98842 1.01619 0.91847 0.92016 0.86441 0.88337 0.85065 0.88706 0.74014 0.74851 0.91395 0.93934 0.93727 0.99209 0.94009 0.92476 0.90296 0.94667 0.90044 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 113.37 1.21 1.80 16 2 O -0.30 -9.66 9.98 -86.70 -0.87 -10.53 16 3 C 0.29 8.49 7.85 85.70 0.67 9.17 16 4 N -0.37 -8.70 11.90 -170.00 -2.02 -10.72 16 5 N -0.34 -4.82 3.97 -367.77 -1.46 -6.29 16 6 C 0.09 0.23 11.44 127.77 1.46 1.69 16 7 C 0.16 2.18 10.98 84.31 0.93 3.11 16 8 C -0.33 -8.72 6.14 -20.08 -0.12 -8.84 16 9 C 0.59 19.48 7.77 86.61 0.67 20.16 16 10 O -0.59 -26.35 16.09 1.01 0.02 -26.33 16 11 N -0.70 -18.86 5.07 -445.84 -2.26 -21.11 16 12 C 0.17 5.74 2.41 45.02 0.11 5.85 16 13 H 0.05 2.11 7.57 -2.39 -0.02 2.09 16 14 C -0.13 -5.14 5.65 30.67 0.17 -4.96 16 15 C 0.16 8.30 4.69 86.36 0.41 8.70 16 16 N -0.61 -30.42 2.83 -674.44 -1.91 -32.33 16 17 C -0.34 -18.40 8.49 84.03 0.71 -17.68 16 18 H 0.07 3.59 6.28 -2.91 -0.02 3.57 16 19 C -0.09 -4.94 4.70 84.86 0.40 -4.54 16 20 N -0.95 -60.29 12.45 21.65 0.27 -60.02 16 21 Si 1.11 51.25 29.98 68.60 2.06 53.30 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.16 6.33 3.51 45.12 0.16 6.49 16 26 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 27 C -0.12 -4.27 7.95 71.98 0.57 -3.70 16 28 C -0.11 -3.46 4.86 30.82 0.15 -3.31 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.24 0.43 7.46 -2.91 -0.02 0.41 16 36 H 0.41 6.91 7.52 -92.71 -0.70 6.21 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.04 2.55 6.38 -2.39 -0.02 2.54 16 40 H -0.01 -0.56 7.84 -2.39 -0.02 -0.58 16 41 H 0.25 16.36 6.69 -92.71 -0.62 15.74 16 42 H 0.06 1.95 7.44 -2.39 -0.02 1.93 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.03 1.39 7.62 -2.39 -0.02 1.38 16 45 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -89.07 373.26 1.77 -87.30 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.44 Total: 12.80 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 7.50 Total: 13.93 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -7.38 Total: -130.47 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.85 Total: -36.86 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.06 Total: 53.30 kcal Total: -89.07 1.77 -87.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947615213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.037 kcal (2) G-P(sol) polarization free energy of solvation -89.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds