Wall clock time and date at job start Tue Mar 31 2020 14:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35851 * 116.99646 * 2 1 4 4 N 1.30802 * 126.06121 * 0.02815 * 3 2 1 5 5 N 1.39923 * 108.88294 * 179.73416 * 4 3 2 6 6 C 1.46502 * 125.69072 * 180.02562 * 5 4 3 7 7 C 1.34166 * 108.62086 * 0.02562 * 5 4 3 8 8 C 1.38131 * 107.50849 * 359.97438 * 7 5 4 9 9 C 1.47244 * 126.44829 * 180.02562 * 8 7 5 10 10 O 1.21624 * 120.00351 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99826 * 359.96287 * 9 8 7 12 12 C 1.46508 * 120.00171 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.45600 * 34.97200 * 12 11 9 14 14 C 1.53038 * 109.46006 * 275.00113 * 12 11 9 15 15 C 1.53192 * 109.31172 * 178.61207 * 14 12 11 16 16 N 1.46923 * 108.77648 * 54.63650 * 15 14 12 17 17 C 1.36938 * 120.63430 * 126.41103 * 16 15 14 18 18 H 1.07997 * 119.99858 * 207.66986 * 17 16 15 19 19 C 1.38814 * 119.99884 * 27.67219 * 17 16 15 20 20 N 1.31615 * 119.99961 * 17.36355 * 19 17 16 21 21 Si 1.86800 * 119.99819 * 197.36569 * 19 17 16 22 22 H 1.48500 * 109.46997 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47091 * 119.99758 * 21 19 17 24 24 H 1.48498 * 109.46495 * 239.99915 * 21 19 17 25 25 C 1.46937 * 118.73578 * 306.39081 * 16 15 14 26 26 H 1.08993 * 109.58470 * 173.39941 * 25 16 15 27 27 C 1.53005 * 109.58207 * 293.82037 * 25 16 15 28 28 C 1.53034 * 109.46035 * 154.92868 * 12 11 9 29 29 H 1.09002 * 109.47276 * 59.99899 * 1 2 3 30 30 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47199 * 299.99386 * 1 2 3 32 32 H 1.08988 * 109.46870 * 89.97429 * 6 5 4 33 33 H 1.08992 * 109.47170 * 209.98045 * 6 5 4 34 34 H 1.09004 * 109.47065 * 329.97340 * 6 5 4 35 35 H 1.07997 * 126.24473 * 180.02562 * 7 5 4 36 36 H 0.97002 * 120.00061 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.49800 * 298.56430 * 14 12 11 38 38 H 1.09005 * 109.50030 * 58.65543 * 14 12 11 39 39 H 1.08998 * 109.58233 * 174.41753 * 15 14 12 40 40 H 1.08994 * 109.58585 * 294.84434 * 15 14 12 41 41 H 0.97002 * 120.00058 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47185 * 60.00219 * 27 25 16 43 43 H 1.09004 * 109.46629 * 179.97438 * 27 25 16 44 44 H 1.08993 * 109.47293 * 299.99830 * 27 25 16 45 45 H 1.08997 * 109.50086 * 301.33831 * 28 12 11 46 46 H 1.08999 * 109.49855 * 61.43842 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3765 0.0005 5 7 2.4281 3.3801 0.0065 6 6 2.1703 4.8222 0.0094 7 6 3.6385 2.8013 0.0090 8 6 3.4452 1.4336 0.0054 9 6 4.4955 0.4017 0.0069 10 8 4.1912 -0.7759 0.0037 11 7 5.7942 0.7620 0.0117 12 6 6.8393 -0.2647 0.0138 13 1 6.5101 -1.1192 -0.5775 14 6 7.1101 -0.7135 1.4516 15 6 8.1785 -1.8115 1.4468 16 7 9.3645 -1.3141 0.7364 17 6 10.5991 -1.3527 1.3276 18 1 11.3539 -0.6322 1.0489 19 6 10.8805 -2.3177 2.2849 20 7 10.1188 -3.3863 2.3857 21 14 12.3400 -2.0995 3.4302 22 1 13.0310 -0.8237 3.1139 23 1 11.8653 -2.0703 4.8369 24 1 13.2842 -3.2313 3.2496 25 6 9.2008 -0.7751 -0.6206 26 1 10.1433 -0.3449 -0.9590 27 6 8.7754 -1.8969 -1.5702 28 6 8.1209 0.3112 -0.5927 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.1025 5.1770 1.0377 33 1 2.9843 5.3378 -0.5000 34 1 1.2322 5.0247 -0.5075 35 1 4.5903 3.3117 0.0140 36 1 6.0369 1.7012 0.0137 37 1 7.4633 0.1352 2.0373 38 1 6.1912 -1.1019 1.8907 39 1 8.4465 -2.0648 2.4725 40 1 7.7921 -2.6951 0.9390 41 1 10.3152 -4.0605 3.0549 42 1 7.8296 -2.3202 -1.2319 43 1 8.6541 -1.4949 -2.5761 44 1 9.5391 -2.6746 -1.5790 45 1 7.9215 0.6520 -1.6086 46 1 8.4646 1.1502 0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947615214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:54 Heat of formation + Delta-G solvation = 32.607347 kcal Electronic energy + Delta-G solvation = -27807.347815 eV Core-core repulsion = 23928.252845 eV Total energy + Delta-G solvation = -3879.094971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.65895 -39.25079 -38.39726 -37.46962 -34.30350 -33.15548 -32.47588 -31.13952 -30.31987 -29.20194 -28.09632 -26.91000 -26.33358 -24.30313 -23.01746 -21.88846 -21.52660 -20.97869 -19.99911 -18.65356 -17.86443 -17.05708 -16.54958 -16.45992 -15.90717 -15.54969 -15.21267 -15.13495 -14.63452 -14.32073 -14.02423 -13.71220 -13.63502 -13.18486 -13.11144 -12.95673 -12.91036 -12.48522 -12.37705 -12.13634 -12.08516 -11.39756 -11.33230 -11.06166 -10.98965 -10.84519 -10.74157 -10.54060 -10.26057 -10.11488 -9.94817 -9.63854 -9.58514 -9.35431 -9.23933 -8.72609 -8.52377 -8.30413 -6.62991 -5.73099 -3.15337 1.28421 1.92902 2.16664 3.06566 3.40138 3.48022 3.49868 3.60048 3.69096 4.11156 4.37801 4.52973 4.70742 4.80680 4.97056 5.03814 5.09259 5.18649 5.31847 5.34994 5.42524 5.46110 5.54374 5.60423 5.71315 5.88799 6.11833 6.16005 6.33275 6.42248 6.48016 6.55452 6.57172 6.66148 6.76575 6.90562 6.98495 7.03159 7.08283 7.23858 7.41211 7.47906 7.77333 7.85432 7.93084 8.50948 8.67164 9.26871 9.90725 10.47614 11.34962 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002812 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.957110 B = 9954.974324 C =10239.768771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.265 6.265 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.351 5.351 6 C 0.101 3.899 7 C 0.119 3.881 8 C -0.285 4.285 9 C 0.588 3.412 10 O -0.530 6.530 11 N -0.725 5.725 12 C 0.152 3.848 13 H 0.086 0.914 14 C -0.147 4.147 15 C 0.174 3.826 16 N -0.586 5.586 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.170 3.830 26 H 0.064 0.936 27 C -0.163 4.163 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.388 0.612 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.253 0.747 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.276 17.382 -6.265 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.167 6.167 3 C 0.110 3.890 4 N -0.195 5.195 5 N -0.133 5.133 6 C -0.040 4.040 7 C -0.033 4.033 8 C -0.300 4.300 9 C 0.374 3.626 10 O -0.406 6.406 11 N -0.376 5.376 12 C 0.049 3.951 13 H 0.104 0.896 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.307 5.307 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.062 3.938 26 H 0.082 0.918 27 C -0.222 4.222 28 C -0.172 4.172 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.207 0.793 36 H 0.221 0.779 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.532 16.749 -6.146 25.014 hybrid contribution 1.287 0.317 0.690 1.494 sum -16.245 17.067 -5.456 24.185 Atomic orbital electron populations 1.23029 0.77886 1.03822 1.01799 1.86547 1.21624 1.20341 1.88149 1.20436 0.90204 0.85205 0.93161 1.77294 1.13158 0.94621 1.34477 1.47652 1.03195 1.06445 1.56003 1.21990 1.04480 0.73602 1.03932 1.23059 0.91181 0.92201 0.96819 1.19873 0.92019 0.92688 1.25441 1.17069 0.81613 0.87467 0.76423 1.90820 1.82146 1.17955 1.49711 1.46120 1.05487 1.09984 1.75961 1.21059 0.85633 0.90318 0.98073 0.89649 1.22565 1.00100 1.01137 0.94903 1.20745 0.84131 0.91114 0.99267 1.44188 1.04179 1.72306 1.10044 1.19195 0.90847 1.09447 1.18612 0.91669 1.25042 0.98092 0.94795 1.01695 1.70050 1.40342 1.08474 1.35451 0.86265 0.82289 0.77432 0.81020 1.20328 1.21651 1.21827 1.20434 0.95073 0.91550 0.86741 0.91759 1.22307 1.01753 1.00510 0.97656 1.22291 0.95670 1.00016 0.99186 0.92580 0.87981 0.92544 0.90201 0.88835 0.88941 0.79349 0.77872 0.92817 0.92836 0.89381 0.96057 0.93701 0.93096 0.94536 0.92668 0.92648 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 101.05 1.08 1.39 16 2 O -0.26 -4.07 9.99 -24.63 -0.25 -4.32 16 3 C 0.32 4.65 7.85 -16.66 -0.13 4.52 16 4 N -0.36 -4.46 11.90 30.79 0.37 -4.10 16 5 N -0.35 -3.19 3.98 -67.60 -0.27 -3.46 16 6 C 0.10 0.39 11.44 59.85 0.68 1.07 16 7 C 0.12 1.09 10.98 -16.57 -0.18 0.91 16 8 C -0.28 -3.97 6.14 -104.95 -0.64 -4.61 16 9 C 0.59 9.91 7.77 -12.60 -0.10 9.81 16 10 O -0.53 -11.37 16.09 -0.10 0.00 -11.37 16 11 N -0.73 -10.61 5.07 -54.90 -0.28 -10.89 16 12 C 0.15 2.71 2.21 -67.89 -0.15 2.56 16 13 H 0.09 1.73 5.92 -51.93 -0.31 1.43 16 14 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 15 C 0.17 4.25 4.89 -3.71 -0.02 4.23 16 16 N -0.59 -14.38 2.70 -164.77 -0.45 -14.83 16 17 C -0.25 -6.79 9.59 -15.06 -0.14 -6.94 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 21 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.17 3.45 3.29 -67.59 -0.22 3.23 16 26 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 27 C -0.16 -3.18 9.03 37.16 0.34 -2.85 16 28 C -0.13 -2.18 5.02 -26.62 -0.13 -2.32 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.22 8.14 -51.94 -0.42 -0.20 16 33 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.19 0.86 7.46 -52.49 -0.39 0.47 16 36 H 0.39 4.18 7.52 -40.82 -0.31 3.88 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 40 H 0.02 0.56 7.50 -51.93 -0.39 0.17 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 1.04 5.72 -51.93 -0.30 0.75 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -36.35 373.27 -6.56 -42.90 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.04 Total: 1.60 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 0.14 Total: 7.84 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.00 Total: -58.92 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.25 Total: -15.69 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.35 -6.56 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947615214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.510 kcal (2) G-P(sol) polarization free energy of solvation -36.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds