Wall clock time and date at job start Tue Mar 31 2020 14:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35851 * 116.99646 * 2 1 4 4 N 1.30802 * 126.06121 * 0.02815 * 3 2 1 5 5 N 1.39923 * 108.88294 * 179.73416 * 4 3 2 6 6 C 1.46502 * 125.69072 * 180.02562 * 5 4 3 7 7 C 1.34166 * 108.62086 * 0.02562 * 5 4 3 8 8 C 1.38131 * 107.50849 * 359.97438 * 7 5 4 9 9 C 1.47244 * 126.44829 * 180.02562 * 8 7 5 10 10 O 1.21624 * 120.00351 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99826 * 359.96287 * 9 8 7 12 12 C 1.46508 * 120.00171 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.45600 * 34.97200 * 12 11 9 14 14 C 1.53038 * 109.46006 * 275.00113 * 12 11 9 15 15 C 1.53192 * 109.31172 * 178.61207 * 14 12 11 16 16 N 1.46923 * 108.77648 * 54.63650 * 15 14 12 17 17 C 1.36938 * 120.63430 * 126.41103 * 16 15 14 18 18 H 1.07997 * 119.99858 * 207.66986 * 17 16 15 19 19 C 1.38814 * 119.99884 * 27.67219 * 17 16 15 20 20 N 1.31615 * 119.99961 * 17.36355 * 19 17 16 21 21 Si 1.86800 * 119.99819 * 197.36569 * 19 17 16 22 22 H 1.48500 * 109.46997 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47091 * 119.99758 * 21 19 17 24 24 H 1.48498 * 109.46495 * 239.99915 * 21 19 17 25 25 C 1.46937 * 118.73578 * 306.39081 * 16 15 14 26 26 H 1.08993 * 109.58470 * 173.39941 * 25 16 15 27 27 C 1.53005 * 109.58207 * 293.82037 * 25 16 15 28 28 C 1.53034 * 109.46035 * 154.92868 * 12 11 9 29 29 H 1.09002 * 109.47276 * 59.99899 * 1 2 3 30 30 H 1.09005 * 109.46824 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47199 * 299.99386 * 1 2 3 32 32 H 1.08988 * 109.46870 * 89.97429 * 6 5 4 33 33 H 1.08992 * 109.47170 * 209.98045 * 6 5 4 34 34 H 1.09004 * 109.47065 * 329.97340 * 6 5 4 35 35 H 1.07997 * 126.24473 * 180.02562 * 7 5 4 36 36 H 0.97002 * 120.00061 * 359.97438 * 11 9 8 37 37 H 1.09005 * 109.49800 * 298.56430 * 14 12 11 38 38 H 1.09005 * 109.50030 * 58.65543 * 14 12 11 39 39 H 1.08998 * 109.58233 * 174.41753 * 15 14 12 40 40 H 1.08994 * 109.58585 * 294.84434 * 15 14 12 41 41 H 0.97002 * 120.00058 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47185 * 60.00219 * 27 25 16 43 43 H 1.09004 * 109.46629 * 179.97438 * 27 25 16 44 44 H 1.08993 * 109.47293 * 299.99830 * 27 25 16 45 45 H 1.08997 * 109.50086 * 301.33831 * 28 12 11 46 46 H 1.08999 * 109.49855 * 61.43842 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4530 2.3765 0.0005 5 7 2.4281 3.3801 0.0065 6 6 2.1703 4.8222 0.0094 7 6 3.6385 2.8013 0.0090 8 6 3.4452 1.4336 0.0054 9 6 4.4955 0.4017 0.0069 10 8 4.1912 -0.7759 0.0037 11 7 5.7942 0.7620 0.0117 12 6 6.8393 -0.2647 0.0138 13 1 6.5101 -1.1192 -0.5775 14 6 7.1101 -0.7135 1.4516 15 6 8.1785 -1.8115 1.4468 16 7 9.3645 -1.3141 0.7364 17 6 10.5991 -1.3527 1.3276 18 1 11.3539 -0.6322 1.0489 19 6 10.8805 -2.3177 2.2849 20 7 10.1188 -3.3863 2.3857 21 14 12.3400 -2.0995 3.4302 22 1 13.0310 -0.8237 3.1139 23 1 11.8653 -2.0703 4.8369 24 1 13.2842 -3.2313 3.2496 25 6 9.2008 -0.7751 -0.6206 26 1 10.1433 -0.3449 -0.9590 27 6 8.7754 -1.8969 -1.5702 28 6 8.1209 0.3112 -0.5927 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 2.1025 5.1770 1.0377 33 1 2.9843 5.3378 -0.5000 34 1 1.2322 5.0247 -0.5075 35 1 4.5903 3.3117 0.0140 36 1 6.0369 1.7012 0.0137 37 1 7.4633 0.1352 2.0373 38 1 6.1912 -1.1019 1.8907 39 1 8.4465 -2.0648 2.4725 40 1 7.7921 -2.6951 0.9390 41 1 10.3152 -4.0605 3.0549 42 1 7.8296 -2.3202 -1.2319 43 1 8.6541 -1.4949 -2.5761 44 1 9.5391 -2.6746 -1.5790 45 1 7.9215 0.6520 -1.6086 46 1 8.4646 1.1502 0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947615214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:53 Heat of formation + Delta-G solvation = 4.061409 kcal Electronic energy + Delta-G solvation = -27808.585660 eV Core-core repulsion = 23928.252845 eV Total energy + Delta-G solvation = -3880.332816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.51666 -40.64465 -39.33396 -39.05331 -35.90542 -34.29109 -33.81210 -32.58040 -31.83115 -30.69359 -28.82383 -28.48804 -27.12422 -26.11820 -24.26288 -23.59160 -22.83833 -21.89011 -21.21745 -20.12302 -19.19442 -18.44445 -17.86965 -17.33840 -17.19076 -16.80663 -16.34825 -16.01422 -15.94087 -15.67642 -15.47391 -15.43702 -15.03840 -14.61233 -14.22231 -14.13681 -13.94412 -13.84751 -13.46699 -13.45688 -13.12316 -12.88060 -12.85111 -12.63505 -12.51277 -12.23222 -12.15545 -11.99277 -11.93444 -11.92214 -11.70743 -11.42882 -11.09743 -10.77450 -10.52504 -10.23376 -9.93378 -9.46924 -8.64970 -7.81578 -5.26556 0.51019 1.12826 1.28608 1.49034 1.50829 1.61273 2.18369 2.46410 2.51368 2.55177 3.33958 3.40762 3.67079 3.80142 3.92176 4.17584 4.23024 4.30580 4.31210 4.35861 4.37851 4.51388 4.51805 4.54897 4.58115 4.63370 4.72993 4.76245 4.79988 4.82949 4.89827 5.00023 5.16927 5.22159 5.22688 5.39176 5.49643 5.56537 5.68978 5.72745 5.80714 5.88399 6.16301 6.44759 6.50548 6.81190 7.19438 7.48120 7.92054 8.44715 9.25143 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002812 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.957110 B = 9954.974324 C =10239.768771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.290 3.710 4 N -0.371 5.371 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.157 3.843 8 C -0.331 4.331 9 C 0.588 3.412 10 O -0.590 6.590 11 N -0.705 5.705 12 C 0.164 3.836 13 H 0.057 0.943 14 C -0.132 4.132 15 C 0.186 3.814 16 N -0.599 5.599 17 C -0.253 4.253 18 H 0.075 0.925 19 C -0.056 4.056 20 N -0.938 5.938 21 Si 0.965 3.035 22 H -0.260 1.260 23 H -0.295 1.295 24 H -0.297 1.297 25 C 0.160 3.840 26 H 0.073 0.927 27 C -0.155 4.155 28 C -0.116 4.116 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.244 0.756 36 H 0.413 0.587 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.052 0.948 40 H -0.014 1.014 41 H 0.246 0.754 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.093 0.907 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.816 22.173 -7.297 28.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.205 6.205 3 C 0.085 3.915 4 N -0.212 5.212 5 N -0.121 5.121 6 C -0.051 4.051 7 C 0.003 3.997 8 C -0.346 4.346 9 C 0.377 3.623 10 O -0.471 6.471 11 N -0.357 5.357 12 C 0.059 3.941 13 H 0.075 0.925 14 C -0.172 4.172 15 C 0.059 3.941 16 N -0.322 5.322 17 C -0.384 4.384 18 H 0.093 0.907 19 C -0.251 4.251 20 N -0.585 5.585 21 Si 0.794 3.206 22 H -0.184 1.184 23 H -0.222 1.222 24 H -0.224 1.224 25 C 0.053 3.947 26 H 0.091 0.909 27 C -0.214 4.214 28 C -0.155 4.155 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.260 0.740 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.004 0.996 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.112 0.888 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.093 21.652 -7.209 28.512 hybrid contribution 1.064 -1.059 0.957 1.780 sum -16.029 20.593 -6.252 26.834 Atomic orbital electron populations 1.23215 0.76045 1.05082 1.02335 1.86475 1.23796 1.21806 1.88391 1.20769 0.90933 0.85456 0.94294 1.77248 1.14496 0.94669 1.34750 1.48189 1.02712 1.07691 1.53484 1.22523 1.06390 0.70509 1.05641 1.23700 0.92890 0.90350 0.92782 1.19766 0.90867 0.94136 1.29848 1.17515 0.82476 0.87320 0.75030 1.90788 1.83061 1.20703 1.52560 1.45720 1.04130 1.10551 1.75289 1.20672 0.87249 0.90694 0.95463 0.92487 1.22322 0.97733 0.99815 0.97319 1.20390 0.85445 0.91535 0.96732 1.44404 1.03333 1.72343 1.12074 1.19599 0.91664 1.08874 1.18234 0.90714 1.25831 1.00947 0.94722 1.03588 1.70229 1.42493 1.09516 1.36227 0.85228 0.79151 0.77672 0.78529 1.18421 1.22208 1.22440 1.20733 0.97050 0.92484 0.84426 0.90865 1.22205 0.99694 0.99736 0.99753 1.22122 0.92989 0.98702 1.01659 0.91840 0.86460 0.92076 0.88633 0.84929 0.88648 0.74015 0.74973 0.91753 0.94483 0.93003 0.99562 0.94445 0.95015 0.90640 0.95400 0.88837 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 113.37 1.21 1.81 16 2 O -0.30 -9.72 9.99 -86.76 -0.87 -10.59 16 3 C 0.29 8.55 7.85 85.71 0.67 9.22 16 4 N -0.37 -8.79 11.90 -170.00 -2.02 -10.82 16 5 N -0.34 -4.91 3.98 -367.80 -1.46 -6.37 16 6 C 0.09 0.25 11.44 127.77 1.46 1.71 16 7 C 0.16 2.21 10.98 84.31 0.93 3.13 16 8 C -0.33 -8.77 6.14 -20.08 -0.12 -8.89 16 9 C 0.59 19.59 7.77 86.61 0.67 20.27 16 10 O -0.59 -26.52 16.09 1.02 0.02 -26.50 16 11 N -0.71 -18.99 5.07 -445.84 -2.26 -21.24 16 12 C 0.16 5.66 2.21 45.01 0.10 5.76 16 13 H 0.06 2.35 5.92 -2.38 -0.01 2.34 16 14 C -0.13 -5.47 5.65 30.67 0.17 -5.29 16 15 C 0.19 9.52 4.89 86.36 0.42 9.94 16 16 N -0.60 -29.64 2.70 -675.22 -1.82 -31.47 16 17 C -0.25 -13.69 9.59 84.03 0.81 -12.89 16 18 H 0.08 3.84 7.89 -2.91 -0.02 3.82 16 19 C -0.06 -3.15 4.91 84.86 0.42 -2.74 16 20 N -0.94 -57.28 11.19 21.65 0.24 -57.04 16 21 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 25 C 0.16 6.22 3.29 44.97 0.15 6.37 16 26 H 0.07 2.73 7.93 -2.39 -0.02 2.72 16 27 C -0.15 -5.99 9.03 71.98 0.65 -5.34 16 28 C -0.12 -3.42 5.02 30.67 0.15 -3.27 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.13 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.24 0.48 7.46 -2.91 -0.02 0.46 16 36 H 0.41 6.93 7.52 -92.71 -0.70 6.24 16 37 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.05 3.01 6.04 -2.39 -0.01 3.00 16 40 H -0.01 -0.78 7.50 -2.39 -0.02 -0.80 16 41 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.03 1.33 5.72 -2.39 -0.01 1.31 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -87.14 373.27 1.84 -85.30 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.30 Total: 11.77 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 7.69 Total: 19.79 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -7.33 Total: -126.94 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.85 Total: -37.09 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -87.14 1.84 -85.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947615214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.359 kcal (2) G-P(sol) polarization free energy of solvation -87.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds