Wall clock time and date at job start Tue Mar 31 2020 14:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35350 * 116.99879 * 2 1 4 4 C 1.39002 * 126.40626 * 264.27470 * 3 2 1 5 5 C 1.46920 * 126.49619 * 0.02562 * 4 3 2 6 6 O 1.21663 * 119.99695 * 359.72014 * 5 4 3 7 7 N 1.34773 * 119.99848 * 179.71274 * 5 4 3 8 8 C 1.46501 * 119.99650 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.45104 * 35.04166 * 8 7 5 10 10 C 1.53033 * 109.46480 * 275.06923 * 8 7 5 11 11 C 1.53624 * 109.24690 * 178.49379 * 10 8 7 12 12 N 1.46919 * 108.54256 * 54.85553 * 11 10 8 13 13 C 1.36938 * 120.63359 * 126.37425 * 12 11 10 14 14 H 1.08000 * 119.99921 * 209.13151 * 13 12 11 15 15 C 1.38808 * 119.99555 * 29.39678 * 13 12 11 16 16 N 1.31625 * 120.00356 * 14.35512 * 15 13 12 17 17 Si 1.86804 * 119.99984 * 194.34910 * 15 13 12 18 18 H 1.48505 * 109.46988 * 90.00227 * 17 15 13 19 19 H 1.48496 * 109.47108 * 210.00249 * 17 15 13 20 20 H 1.48499 * 109.46884 * 330.00490 * 17 15 13 21 21 C 1.46930 * 118.74102 * 306.09439 * 12 11 10 22 22 H 1.08998 * 109.58684 * 294.08130 * 21 12 11 23 23 C 1.52997 * 109.58823 * 173.64674 * 21 12 11 24 24 C 1.53043 * 109.45835 * 155.00216 * 8 7 5 25 25 C 1.41465 * 107.00434 * 179.75694 * 4 3 2 26 26 N 1.30314 * 108.13901 * 0.23870 * 25 4 3 27 27 N 1.34658 * 126.40922 * 84.44802 * 3 2 1 28 28 C 1.46504 * 125.74089 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47104 * 304.66396 * 1 2 3 30 30 H 1.08997 * 109.47563 * 64.66959 * 1 2 3 31 31 H 1.08999 * 109.47334 * 184.67033 * 1 2 3 32 32 H 0.96995 * 120.00497 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.49772 * 298.57216 * 10 8 7 34 34 H 1.09000 * 109.49804 * 58.62780 * 10 8 7 35 35 H 1.09008 * 109.73313 * 295.11937 * 11 10 8 36 36 H 1.08998 * 109.66665 * 174.55337 * 11 10 8 37 37 H 0.96995 * 120.00073 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.46655 * 60.00430 * 23 21 12 39 39 H 1.09005 * 109.47132 * 180.02562 * 23 21 12 40 40 H 1.08995 * 109.47561 * 300.00465 * 23 21 12 41 41 H 1.09002 * 109.49938 * 61.43407 * 24 8 7 42 42 H 1.09008 * 109.52316 * 301.35279 * 24 8 7 43 43 H 1.08003 * 125.92895 * 180.22042 * 25 4 3 44 44 H 1.09005 * 109.46789 * 275.70811 * 28 27 3 45 45 H 1.09002 * 109.46948 * 35.70004 * 28 27 3 46 46 H 1.09000 * 109.47472 * 155.70893 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.5173 1.8904 -1.1131 5 6 2.4456 1.4422 -2.5105 6 8 1.9355 0.3711 -2.7803 7 7 2.9447 2.2176 -3.4933 8 6 2.8727 1.7708 -4.8867 9 1 1.9467 1.2174 -5.0430 10 6 4.0666 0.8641 -5.1939 11 6 3.9659 0.3684 -6.6445 12 7 3.8512 1.5350 -7.5300 13 6 4.7116 1.6994 -8.5826 14 1 4.9574 2.6923 -8.9291 15 6 5.2635 0.5897 -9.2076 16 7 4.7593 -0.6066 -8.9904 17 14 6.7218 0.7940 -10.3571 18 1 7.9832 0.6754 -9.5823 19 1 6.6809 -0.2613 -11.4009 20 1 6.6605 2.1304 -11.0015 21 6 2.7917 2.5189 -7.2687 22 1 1.8172 2.0584 -7.4311 23 6 2.9599 3.7153 -8.2074 24 6 2.9021 2.9877 -5.8144 25 6 3.0762 3.1032 -0.6461 26 7 2.9491 3.1357 0.6504 27 7 2.3128 1.9657 1.0786 28 6 1.9883 1.6271 2.4666 29 1 -0.3633 0.5845 0.8453 30 1 -0.3634 0.4396 -0.9288 31 1 -0.3634 -1.0242 0.0837 32 1 3.3517 3.0714 -3.2782 33 1 4.9923 1.4242 -5.0617 34 1 4.0584 0.0100 -4.5168 35 1 3.0852 -0.2640 -6.7570 36 1 4.8607 -0.1987 -6.9012 37 1 5.1448 -1.3820 -9.4275 38 1 2.8936 3.3777 -9.2417 39 1 2.1733 4.4442 -8.0116 40 1 3.9326 4.1767 -8.0374 41 1 3.8388 3.5278 -5.6764 42 1 2.0650 3.6452 -5.5795 43 1 3.5298 3.8690 -1.2579 44 1 0.9596 1.9175 2.6803 45 1 2.1007 0.5530 2.6143 46 1 2.6628 2.1589 3.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947970871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:57 Heat of formation + Delta-G solvation = 32.191869 kcal Electronic energy + Delta-G solvation = -27874.815934 eV Core-core repulsion = 23995.702947 eV Total energy + Delta-G solvation = -3879.112987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.75681 -39.23566 -38.35416 -37.41882 -34.41759 -33.68215 -32.32832 -31.26179 -30.18251 -29.38165 -27.63202 -27.03120 -26.25679 -24.75784 -23.01490 -21.93395 -21.32761 -20.66611 -19.87709 -19.27325 -18.35386 -16.91885 -16.67949 -16.21867 -16.03230 -15.36739 -15.01474 -14.95579 -14.76580 -14.37632 -13.93918 -13.88897 -13.72803 -13.47564 -13.17005 -13.08125 -13.03483 -12.69866 -12.51116 -12.21471 -11.57116 -11.53874 -11.15166 -11.02252 -10.85403 -10.83495 -10.61401 -10.49359 -10.24026 -10.05460 -9.97171 -9.73170 -9.69546 -9.64984 -9.27550 -8.88565 -8.53933 -8.33096 -6.57866 -5.71091 -3.15787 1.04215 1.83796 1.97729 3.22022 3.41297 3.48168 3.49326 3.52830 3.65699 4.15232 4.53796 4.65962 4.69297 4.73548 4.90574 4.98477 5.00683 5.10853 5.31516 5.34895 5.44637 5.45909 5.57514 5.69222 5.79902 5.86311 6.07640 6.13275 6.22782 6.34643 6.37649 6.49467 6.54005 6.60310 6.74461 6.90039 7.00967 7.09149 7.11223 7.15873 7.21649 7.47649 7.77854 7.87802 7.90009 8.53243 8.61133 9.28666 9.92136 10.49373 11.37215 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.002753 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.420166 B =10169.866710 C =10425.724361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.295 6.295 3 C 0.318 3.682 4 C -0.290 4.290 5 C 0.590 3.410 6 O -0.538 6.538 7 N -0.721 5.721 8 C 0.154 3.846 9 H 0.081 0.919 10 C -0.147 4.147 11 C 0.175 3.825 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.171 3.829 22 H 0.026 0.974 23 C -0.135 4.135 24 C -0.134 4.134 25 C 0.091 3.909 26 N -0.281 5.281 27 N -0.374 5.374 28 C 0.094 3.906 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.392 0.608 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.196 0.804 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 7.200 21.443 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.203 6.203 3 C 0.145 3.855 4 C -0.305 4.305 5 C 0.376 3.624 6 O -0.416 6.416 7 N -0.370 5.370 8 C 0.051 3.949 9 H 0.099 0.901 10 C -0.187 4.187 11 C 0.049 3.951 12 N -0.311 5.311 13 C -0.379 4.379 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.205 1.205 21 C 0.064 3.936 22 H 0.044 0.956 23 C -0.193 4.193 24 C -0.174 4.174 25 C -0.096 4.096 26 N -0.104 5.104 27 N -0.164 5.164 28 C -0.047 4.047 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.225 0.775 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.212 0.788 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.905 6.630 22.306 24.576 hybrid contribution 0.702 0.035 -0.978 1.205 sum -7.204 6.665 21.327 23.477 Atomic orbital electron populations 1.23129 0.76781 1.04235 1.01391 1.86042 1.21281 1.20178 1.92829 1.19342 0.95241 0.84578 0.86384 1.20206 1.17957 0.98559 0.93817 1.16961 0.78169 0.84069 0.83201 1.90812 1.45313 1.21853 1.83631 1.46059 1.61162 1.22469 1.07345 1.21004 1.00114 0.95908 0.77875 0.90130 1.22644 0.96735 0.98500 1.00851 1.20851 1.01549 0.88728 0.83985 1.44192 1.32601 1.23629 1.30726 1.19187 1.18778 0.92236 1.07703 0.91227 1.25114 1.00169 0.96093 0.98328 1.70013 1.40720 0.98171 1.45869 0.86313 0.83032 0.77150 0.80384 1.21549 1.21861 1.20502 1.20357 0.92133 0.90672 0.90474 0.95614 1.21792 1.00109 0.96719 1.00654 1.22380 1.01047 0.96302 0.97625 1.23944 0.97197 0.96533 0.91926 1.77202 1.18466 1.01183 1.13510 1.48948 1.45859 1.14508 1.07043 1.21981 1.02318 1.02674 0.77732 0.93714 0.91930 0.87564 0.77467 0.92715 0.92870 0.96193 0.89196 0.93687 0.91903 0.94344 0.92801 0.91810 0.92730 0.78775 0.90499 0.89097 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.13 101.05 1.12 1.48 16 2 O -0.29 -3.78 9.83 -25.00 -0.25 -4.03 16 3 C 0.32 4.11 6.99 -16.03 -0.11 3.99 16 4 C -0.29 -3.96 6.15 -104.87 -0.64 -4.60 16 5 C 0.59 9.62 7.76 -12.75 -0.10 9.52 16 6 O -0.54 -10.84 16.04 -2.03 -0.03 -10.87 16 7 N -0.72 -10.61 5.07 -55.00 -0.28 -10.89 16 8 C 0.15 2.75 2.41 -67.89 -0.16 2.58 16 9 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 10 C -0.15 -3.01 5.67 -26.39 -0.15 -3.16 16 11 C 0.18 4.30 5.31 -3.49 -0.02 4.28 16 12 N -0.59 -14.49 2.98 -164.51 -0.49 -14.98 16 13 C -0.25 -6.67 8.59 -15.06 -0.13 -6.79 16 14 H 0.07 1.81 6.22 -52.49 -0.33 1.48 16 15 C 0.00 0.04 4.97 -17.43 -0.09 -0.05 16 16 N -0.90 -26.43 11.13 55.49 0.62 -25.81 16 17 Si 0.90 21.73 29.58 -169.99 -5.03 16.71 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.17 3.49 3.49 -67.60 -0.24 3.26 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 C -0.14 -2.48 7.95 37.16 0.30 -2.19 16 24 C -0.13 -2.24 4.84 -26.61 -0.13 -2.37 16 25 C 0.09 0.99 11.50 -16.97 -0.20 0.80 16 26 N -0.28 -3.22 12.47 30.88 0.39 -2.84 16 27 N -0.37 -4.00 3.99 -67.66 -0.27 -4.27 16 28 C 0.09 0.56 11.38 59.85 0.68 1.24 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.39 4.48 7.55 -40.82 -0.31 4.17 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.20 1.41 7.50 -52.48 -0.39 1.02 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 374.68 15.07 5.65 5.65 Total: -1.00 -34.60 374.68 -6.71 -41.31 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.15 Total: 2.02 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.14 Total: 8.00 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.04 Total: -58.79 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.28 Total: -14.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.60 -6.71 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947970871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.505 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds