Wall clock time and date at job start Tue Mar 31 2020 14:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35350 * 116.99879 * 2 1 4 4 C 1.39002 * 126.40626 * 264.27470 * 3 2 1 5 5 C 1.46920 * 126.49619 * 0.02562 * 4 3 2 6 6 O 1.21663 * 119.99695 * 359.72014 * 5 4 3 7 7 N 1.34773 * 119.99848 * 179.71274 * 5 4 3 8 8 C 1.46501 * 119.99650 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.45104 * 35.04166 * 8 7 5 10 10 C 1.53033 * 109.46480 * 275.06923 * 8 7 5 11 11 C 1.53624 * 109.24690 * 178.49379 * 10 8 7 12 12 N 1.46919 * 108.54256 * 54.85553 * 11 10 8 13 13 C 1.36938 * 120.63359 * 126.37425 * 12 11 10 14 14 H 1.08000 * 119.99921 * 209.13151 * 13 12 11 15 15 C 1.38808 * 119.99555 * 29.39678 * 13 12 11 16 16 N 1.31625 * 120.00356 * 14.35512 * 15 13 12 17 17 Si 1.86804 * 119.99984 * 194.34910 * 15 13 12 18 18 H 1.48505 * 109.46988 * 90.00227 * 17 15 13 19 19 H 1.48496 * 109.47108 * 210.00249 * 17 15 13 20 20 H 1.48499 * 109.46884 * 330.00490 * 17 15 13 21 21 C 1.46930 * 118.74102 * 306.09439 * 12 11 10 22 22 H 1.08998 * 109.58684 * 294.08130 * 21 12 11 23 23 C 1.52997 * 109.58823 * 173.64674 * 21 12 11 24 24 C 1.53043 * 109.45835 * 155.00216 * 8 7 5 25 25 C 1.41465 * 107.00434 * 179.75694 * 4 3 2 26 26 N 1.30314 * 108.13901 * 0.23870 * 25 4 3 27 27 N 1.34658 * 126.40922 * 84.44802 * 3 2 1 28 28 C 1.46504 * 125.74089 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.47104 * 304.66396 * 1 2 3 30 30 H 1.08997 * 109.47563 * 64.66959 * 1 2 3 31 31 H 1.08999 * 109.47334 * 184.67033 * 1 2 3 32 32 H 0.96995 * 120.00497 * 0.02562 * 7 5 4 33 33 H 1.09000 * 109.49772 * 298.57216 * 10 8 7 34 34 H 1.09000 * 109.49804 * 58.62780 * 10 8 7 35 35 H 1.09008 * 109.73313 * 295.11937 * 11 10 8 36 36 H 1.08998 * 109.66665 * 174.55337 * 11 10 8 37 37 H 0.96995 * 120.00073 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.46655 * 60.00430 * 23 21 12 39 39 H 1.09005 * 109.47132 * 180.02562 * 23 21 12 40 40 H 1.08995 * 109.47561 * 300.00465 * 23 21 12 41 41 H 1.09002 * 109.49938 * 61.43407 * 24 8 7 42 42 H 1.09008 * 109.52316 * 301.35279 * 24 8 7 43 43 H 1.08003 * 125.92895 * 180.22042 * 25 4 3 44 44 H 1.09005 * 109.46789 * 275.70811 * 28 27 3 45 45 H 1.09002 * 109.46948 * 35.70004 * 28 27 3 46 46 H 1.09000 * 109.47472 * 155.70893 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.5173 1.8904 -1.1131 5 6 2.4456 1.4422 -2.5105 6 8 1.9355 0.3711 -2.7803 7 7 2.9447 2.2176 -3.4933 8 6 2.8727 1.7708 -4.8867 9 1 1.9467 1.2174 -5.0430 10 6 4.0666 0.8641 -5.1939 11 6 3.9659 0.3684 -6.6445 12 7 3.8512 1.5350 -7.5300 13 6 4.7116 1.6994 -8.5826 14 1 4.9574 2.6923 -8.9291 15 6 5.2635 0.5897 -9.2076 16 7 4.7593 -0.6066 -8.9904 17 14 6.7218 0.7940 -10.3571 18 1 7.9832 0.6754 -9.5823 19 1 6.6809 -0.2613 -11.4009 20 1 6.6605 2.1304 -11.0015 21 6 2.7917 2.5189 -7.2687 22 1 1.8172 2.0584 -7.4311 23 6 2.9599 3.7153 -8.2074 24 6 2.9021 2.9877 -5.8144 25 6 3.0762 3.1032 -0.6461 26 7 2.9491 3.1357 0.6504 27 7 2.3128 1.9657 1.0786 28 6 1.9883 1.6271 2.4666 29 1 -0.3633 0.5845 0.8453 30 1 -0.3634 0.4396 -0.9288 31 1 -0.3634 -1.0242 0.0837 32 1 3.3517 3.0714 -3.2782 33 1 4.9923 1.4242 -5.0617 34 1 4.0584 0.0100 -4.5168 35 1 3.0852 -0.2640 -6.7570 36 1 4.8607 -0.1987 -6.9012 37 1 5.1448 -1.3820 -9.4275 38 1 2.8936 3.3777 -9.2417 39 1 2.1733 4.4442 -8.0116 40 1 3.9326 4.1767 -8.0374 41 1 3.8388 3.5278 -5.6764 42 1 2.0650 3.6452 -5.5795 43 1 3.5298 3.8690 -1.2579 44 1 0.9596 1.9175 2.6803 45 1 2.1007 0.5530 2.6143 46 1 2.6628 2.1589 3.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947970871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:56 Heat of formation + Delta-G solvation = 6.927131 kcal Electronic energy + Delta-G solvation = -27875.911496 eV Core-core repulsion = 23995.702947 eV Total energy + Delta-G solvation = -3880.208549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63217 -40.61617 -39.22636 -39.02510 -35.99468 -34.51398 -34.09417 -32.87296 -31.49247 -30.74547 -28.55306 -27.86217 -27.65469 -26.58494 -24.26803 -23.50336 -22.43666 -21.85857 -21.27173 -20.82237 -19.36076 -18.29418 -17.82516 -17.49513 -17.25754 -16.86646 -16.35402 -15.84292 -15.77201 -15.65947 -15.56808 -15.35907 -14.94918 -14.76001 -14.59811 -14.44544 -14.23904 -13.59506 -13.57668 -13.29089 -12.93678 -12.90330 -12.69706 -12.62211 -12.57127 -12.44373 -12.32702 -12.03429 -11.79347 -11.67287 -11.45204 -11.39191 -11.21156 -10.80448 -10.52178 -10.50528 -10.04786 -9.65686 -8.61035 -7.79908 -5.27226 0.12785 1.07411 1.08461 1.49475 1.50845 1.59245 2.23932 2.39194 2.55412 2.60266 3.35365 3.39660 3.64092 3.88158 3.96729 4.02377 4.14308 4.14503 4.29707 4.32127 4.33410 4.35978 4.45476 4.57436 4.61600 4.65774 4.66924 4.77697 4.80343 4.91160 5.00886 5.04782 5.14367 5.16936 5.21917 5.34923 5.44091 5.54717 5.60395 5.65422 5.75633 5.76920 6.25233 6.38070 6.46865 6.73367 7.20646 7.40214 7.92660 8.45712 9.27215 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.002753 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.420166 B =10169.866710 C =10425.724361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.312 3.688 4 C -0.320 4.320 5 C 0.589 3.411 6 O -0.586 6.586 7 N -0.704 5.704 8 C 0.166 3.834 9 H 0.054 0.946 10 C -0.130 4.130 11 C 0.184 3.816 12 N -0.603 5.603 13 C -0.246 4.246 14 H 0.082 0.918 15 C -0.059 4.059 16 N -0.943 5.943 17 Si 0.965 3.035 18 H -0.288 1.288 19 H -0.301 1.301 20 H -0.263 1.263 21 C 0.159 3.841 22 H 0.010 0.990 23 C -0.126 4.126 24 C -0.117 4.117 25 C 0.103 3.897 26 N -0.292 5.292 27 N -0.367 5.367 28 C 0.082 3.918 29 H 0.073 0.927 30 H 0.042 0.958 31 H 0.124 0.876 32 H 0.413 0.587 33 H 0.062 0.938 34 H 0.039 0.961 35 H -0.014 1.014 36 H 0.055 0.945 37 H 0.246 0.754 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.229 0.771 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 10.404 23.418 26.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.137 3.863 4 C -0.336 4.336 5 C 0.378 3.622 6 O -0.468 6.468 7 N -0.355 5.355 8 C 0.061 3.939 9 H 0.072 0.928 10 C -0.171 4.171 11 C 0.057 3.943 12 N -0.327 5.327 13 C -0.376 4.376 14 H 0.100 0.900 15 C -0.254 4.254 16 N -0.590 5.590 17 Si 0.793 3.207 18 H -0.215 1.215 19 H -0.228 1.228 20 H -0.188 1.188 21 C 0.053 3.947 22 H 0.028 0.972 23 C -0.184 4.184 24 C -0.156 4.156 25 C -0.083 4.083 26 N -0.114 5.114 27 N -0.156 5.156 28 C -0.057 4.057 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.250 0.750 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.004 0.996 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.246 0.754 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.857 9.918 24.333 27.426 hybrid contribution 0.580 -0.989 -1.489 1.880 sum -7.277 8.929 22.844 25.583 Atomic orbital electron populations 1.23319 0.75005 1.05862 1.01598 1.85993 1.23086 1.20535 1.92991 1.19511 0.95028 0.84575 0.87162 1.20064 1.20535 1.00476 0.92477 1.17358 0.77122 0.83337 0.84413 1.90788 1.47486 1.24013 1.84469 1.45712 1.60996 1.23134 1.05678 1.20621 0.97324 0.95886 0.80036 0.92753 1.22384 0.98518 0.98708 0.97458 1.20530 0.98288 0.88694 0.86743 1.44449 1.33758 1.24081 1.30398 1.19588 1.18230 0.92531 1.07240 0.90043 1.25902 1.02979 0.95959 1.00539 1.70199 1.42375 0.98827 1.47590 0.85295 0.79760 0.77341 0.78260 1.21545 1.22848 1.18758 1.20656 0.90000 0.90446 0.93647 0.97224 1.21708 1.01774 0.96361 0.98535 1.22187 1.03364 0.95866 0.94203 1.24411 0.96079 0.95970 0.91880 1.77189 1.18828 1.01673 1.13737 1.49263 1.44675 1.13693 1.08018 1.22390 1.04049 1.03682 0.75578 0.90802 0.93890 0.85792 0.75001 0.91955 0.94203 0.99599 0.92676 0.94515 0.94255 0.90376 0.92501 0.90339 0.89071 0.75431 0.88252 0.88129 0.86964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 11.13 113.37 1.26 1.88 16 2 O -0.32 -7.98 9.83 -79.47 -0.78 -8.77 16 3 C 0.31 7.72 6.99 84.44 0.59 8.31 16 4 C -0.32 -8.33 6.15 -20.03 -0.12 -8.45 16 5 C 0.59 18.99 7.76 86.52 0.67 19.66 16 6 O -0.59 -24.34 16.04 2.71 0.04 -24.29 16 7 N -0.70 -19.56 5.07 -446.15 -2.26 -21.82 16 8 C 0.17 5.81 2.41 45.02 0.11 5.91 16 9 H 0.05 2.22 7.58 -2.38 -0.02 2.21 16 10 C -0.13 -5.44 5.67 30.81 0.17 -5.27 16 11 C 0.18 9.50 5.31 86.51 0.46 9.96 16 12 N -0.60 -30.11 2.98 -674.40 -2.01 -32.12 16 13 C -0.25 -13.19 8.59 84.03 0.72 -12.46 16 14 H 0.08 4.13 6.22 -2.91 -0.02 4.11 16 15 C -0.06 -3.35 4.97 84.86 0.42 -2.93 16 16 N -0.94 -57.69 11.13 21.65 0.24 -57.45 16 17 Si 0.96 45.37 29.58 68.60 2.03 47.40 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.16 6.31 3.49 44.97 0.16 6.47 16 22 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 23 C -0.13 -4.33 7.95 71.98 0.57 -3.76 16 24 C -0.12 -3.59 4.84 30.67 0.15 -3.44 16 25 C 0.10 1.97 11.50 85.71 0.99 2.96 16 26 N -0.29 -5.91 12.47 -56.22 -0.70 -6.61 16 27 N -0.37 -7.04 3.99 -479.78 -1.91 -8.96 16 28 C 0.08 0.76 11.38 127.77 1.45 2.21 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 8.04 7.55 -92.71 -0.70 7.34 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 36 H 0.05 3.21 6.07 -2.39 -0.01 3.20 16 37 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.04 1.51 7.62 -2.38 -0.02 1.49 16 39 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.06 1.91 7.44 -2.39 -0.02 1.89 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 42 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.23 2.38 7.50 -2.91 -0.02 2.36 16 44 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -79.52 374.68 2.53 -76.99 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.29 Total: 14.60 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.60 Total: 21.05 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -6.65 Total: -126.97 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.74 Total: -33.06 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -79.52 2.53 -76.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947970871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.916 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds