Wall clock time and date at job start Tue Mar 31 2020 13:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 N 1.46503 * 109.46874 * 119.99979 * 2 1 3 5 5 N 1.28446 * 125.19176 * 306.02663 * 4 2 1 6 6 C 1.30861 * 110.92736 * 180.02562 * 5 4 2 7 7 C 1.39672 * 107.86382 * 359.78132 * 6 5 4 8 8 C 1.36593 * 125.18880 * 126.06159 * 4 2 1 9 9 C 1.47168 * 126.88630 * 359.93486 * 8 4 2 10 10 O 1.21628 * 119.99767 * 5.76707 * 9 8 4 11 11 N 1.34772 * 120.00470 * 185.76393 * 9 8 4 12 12 C 1.46492 * 120.00581 * 175.11078 * 11 9 8 13 13 C 1.53000 * 109.47447 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.63906 * 303.30814 * 13 12 11 15 15 C 1.54318 * 110.72463 * 66.45211 * 13 12 11 16 16 N 1.47018 * 107.27488 * 140.73307 * 15 13 12 17 17 C 1.36931 * 125.65085 * 181.02255 * 16 15 13 18 18 H 1.08001 * 120.00023 * 10.53370 * 17 16 15 19 19 C 1.38810 * 120.00179 * 190.53106 * 17 16 15 20 20 N 1.31615 * 120.00030 * 8.64672 * 19 17 16 21 21 Si 1.86807 * 120.00142 * 188.64917 * 19 17 16 22 22 H 1.48499 * 109.47323 * 84.99719 * 21 19 17 23 23 H 1.48498 * 109.47004 * 324.99107 * 21 19 17 24 24 H 1.48504 * 109.47050 * 204.99470 * 21 19 17 25 25 C 1.47425 * 108.70159 * 1.28612 * 16 15 13 26 26 C 1.55133 * 104.72266 * 335.55516 * 25 16 15 27 27 H 1.08996 * 111.18952 * 279.18452 * 26 25 16 28 28 O 1.42899 * 110.93939 * 155.28757 * 26 25 16 29 29 H 1.09004 * 109.47401 * 300.00100 * 1 2 3 30 30 H 1.08998 * 109.47171 * 59.99809 * 1 2 3 31 31 H 1.08995 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47299 * 239.99912 * 2 1 3 33 33 H 1.08996 * 109.47057 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.46841 * 300.00228 * 3 2 1 35 35 H 1.09005 * 109.46625 * 60.00323 * 3 2 1 36 36 H 1.08006 * 126.07038 * 179.97438 * 6 5 4 37 37 H 1.08003 * 127.32628 * 180.22998 * 7 6 5 38 38 H 0.97011 * 119.99674 * 355.11380 * 11 9 8 39 39 H 1.08996 * 109.47485 * 59.99667 * 12 11 9 40 40 H 1.09003 * 109.46872 * 300.00012 * 12 11 9 41 41 H 1.09003 * 109.88202 * 21.31681 * 15 13 12 42 42 H 1.09003 * 110.01363 * 260.22710 * 15 13 12 43 43 H 0.96999 * 120.00345 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.36410 * 94.47897 * 25 16 15 45 45 H 1.08996 * 110.37143 * 216.80073 * 25 16 15 46 46 H 0.96699 * 114.00207 * 67.95051 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.6829 -0.4073 2.4033 6 6 2.2848 -1.1990 3.2538 7 6 3.0835 -2.0831 2.5248 8 6 2.9002 -1.7337 1.1981 9 6 3.5253 -2.3640 0.0243 10 8 3.3524 -1.8924 -1.0835 11 7 4.2894 -3.4636 0.1767 12 6 4.8237 -4.1534 -1.0001 13 6 5.6498 -5.3608 -0.5523 14 1 6.4454 -5.0519 0.1258 15 6 4.7486 -6.4232 0.1114 16 7 5.2303 -7.7408 -0.3286 17 6 4.6857 -8.9473 0.0216 18 1 3.7342 -8.9828 0.5314 19 6 5.3566 -10.1249 -0.2785 20 7 6.5872 -10.0811 -0.7433 21 14 4.5128 -11.7718 -0.0229 22 1 3.6952 -12.1000 -1.2183 23 1 3.6347 -11.6978 1.1724 24 1 5.5379 -12.8269 0.1806 25 6 6.4006 -7.5480 -1.2042 26 6 6.2336 -6.1155 -1.7758 27 1 5.5345 -6.1040 -2.6120 28 8 7.4966 -5.5686 -2.1602 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 2.1800 -1.1753 4.3285 37 1 3.7121 -2.8705 2.9136 38 1 4.4857 -3.7984 1.0658 39 1 5.4563 -3.4696 -1.5660 40 1 3.9996 -4.4905 -1.6289 41 1 3.7149 -6.2821 -0.2043 42 1 4.8184 -6.3464 1.1965 43 1 7.0559 -10.9040 -0.9534 44 1 7.3224 -7.6237 -0.6274 45 1 6.3956 -8.2809 -2.0109 46 1 7.9005 -6.0083 -2.9208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958096418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:35 Heat of formation + Delta-G solvation = -9.724092 kcal Electronic energy + Delta-G solvation = -27437.573633 eV Core-core repulsion = 23556.643033 eV Total energy + Delta-G solvation = -3880.930600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.56048 -40.74451 -39.66819 -36.88184 -36.62335 -36.03794 -34.09576 -32.36451 -31.31677 -31.01685 -29.25270 -28.29833 -27.35235 -25.61030 -24.16461 -23.71412 -22.42173 -21.74771 -21.45982 -20.52829 -19.08680 -18.75880 -18.23361 -17.30015 -17.14194 -16.96208 -16.54426 -16.21993 -15.79602 -15.75074 -15.60608 -15.17723 -14.88969 -14.72096 -14.39052 -14.07847 -14.05337 -13.96980 -13.64568 -13.31018 -13.17790 -13.12738 -13.05580 -12.77949 -12.43198 -12.41625 -12.33848 -12.31292 -11.90742 -11.86159 -11.79343 -11.45763 -11.06293 -10.81370 -10.68897 -10.41003 -10.07917 -9.97189 -8.89104 -7.89390 -5.25745 0.20819 1.33223 1.47561 1.48961 1.57038 1.67146 2.09372 2.14830 2.47951 3.18149 3.29772 3.47427 3.49856 3.61861 3.75367 3.86764 3.90237 3.98453 4.10254 4.15329 4.18484 4.40868 4.46029 4.56271 4.59414 4.60319 4.62145 4.71776 4.73314 4.85181 4.87813 4.89799 4.97404 5.11452 5.13540 5.22637 5.30767 5.39806 5.49300 5.58493 5.67253 5.79850 6.16860 6.33369 6.88721 6.97066 7.05853 7.11092 7.72753 8.37704 9.21742 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.002721 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.435101 B =10288.612781 C =11091.180269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.118 3.882 3 C -0.150 4.150 4 N -0.257 5.257 5 N -0.291 5.291 6 C -0.009 4.009 7 C -0.179 4.179 8 C -0.064 4.064 9 C 0.591 3.409 10 O -0.572 6.572 11 N -0.698 5.698 12 C 0.149 3.851 13 C -0.088 4.088 14 H 0.093 0.907 15 C 0.138 3.862 16 N -0.622 5.622 17 C -0.244 4.244 18 H 0.083 0.917 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.977 3.023 22 H -0.285 1.285 23 H -0.269 1.269 24 H -0.296 1.296 25 C 0.156 3.844 26 C 0.097 3.903 27 H 0.073 0.927 28 O -0.568 6.568 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.048 0.952 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.216 0.784 37 H 0.186 0.814 38 H 0.416 0.584 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.249 0.751 44 H 0.003 0.997 45 H 0.040 0.960 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 20.323 2.830 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 C -0.208 4.208 4 N -0.046 5.046 5 N -0.123 5.123 6 C -0.184 4.184 7 C -0.208 4.208 8 C -0.192 4.192 9 C 0.378 3.622 10 O -0.453 6.453 11 N -0.349 5.349 12 C 0.026 3.974 13 C -0.107 4.107 14 H 0.111 0.889 15 C 0.014 3.986 16 N -0.350 5.350 17 C -0.373 4.373 18 H 0.100 0.900 19 C -0.255 4.255 20 N -0.596 5.596 21 Si 0.805 3.195 22 H -0.212 1.212 23 H -0.193 1.193 24 H -0.222 1.222 25 C 0.030 3.970 26 C 0.036 3.964 27 H 0.091 0.909 28 O -0.375 6.375 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.137 0.863 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.203 0.797 38 H 0.253 0.747 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.059 0.941 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.656 21.798 2.326 23.568 hybrid contribution 0.768 -2.558 0.130 2.674 sum -7.888 19.239 2.456 20.938 Atomic orbital electron populations 1.22063 0.91494 1.02682 1.04620 1.22213 0.97052 0.95047 0.83803 1.22068 1.01076 0.93148 1.04485 1.46190 1.29805 1.22580 1.06045 1.73102 1.23639 1.25499 0.90099 1.24154 0.98162 0.94873 1.01244 1.22688 1.04465 1.03757 0.89918 1.21457 1.03467 0.98170 0.96117 1.17067 0.78347 0.80196 0.86611 1.90707 1.63165 1.64165 1.27215 1.45565 1.50726 1.27181 1.11399 1.21225 0.96968 0.92171 0.87070 1.22218 0.97588 0.93605 0.97269 0.88853 1.21536 0.95982 0.84053 0.97068 1.44579 1.33786 1.01364 1.55255 1.19398 1.01682 0.83226 1.32986 0.89953 1.25654 0.96543 1.01236 1.02094 1.70126 1.11445 1.26734 1.51293 0.85127 0.77166 0.79098 0.78131 1.21190 1.19337 1.22231 1.21852 0.89001 0.93007 0.93092 1.23012 0.85254 0.92466 0.95622 0.90895 1.86357 1.35330 1.61130 1.54705 0.91128 0.88007 0.93201 0.86349 0.93280 0.87999 0.91356 0.76740 0.79697 0.74694 0.90553 0.91411 0.94611 0.94636 0.94215 0.97905 0.94139 0.75596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.29 71.98 0.67 -1.80 16 2 C 0.12 2.42 3.52 44.99 0.16 2.58 16 3 C -0.15 -2.48 9.46 71.98 0.68 -1.79 16 4 N -0.26 -6.08 3.09 -314.28 -0.97 -7.05 16 5 N -0.29 -6.59 11.51 -57.14 -0.66 -7.25 16 6 C -0.01 -0.17 12.03 85.18 1.02 0.85 16 7 C -0.18 -3.39 10.50 22.66 0.24 -3.15 16 8 C -0.06 -1.54 6.96 40.79 0.28 -1.26 16 9 C 0.59 15.77 7.79 86.59 0.67 16.45 16 10 O -0.57 -18.10 14.42 -4.12 -0.06 -18.16 16 11 N -0.70 -16.55 5.39 -466.65 -2.51 -19.07 16 12 C 0.15 4.00 5.01 86.38 0.43 4.43 16 13 C -0.09 -2.72 2.74 -9.61 -0.03 -2.75 16 14 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 15 C 0.14 5.15 6.52 86.73 0.57 5.72 16 16 N -0.62 -30.47 3.39 -691.56 -2.35 -32.81 16 17 C -0.24 -13.19 10.24 84.03 0.86 -12.33 16 18 H 0.08 4.26 7.84 -2.91 -0.02 4.23 16 19 C -0.06 -3.41 5.41 84.86 0.46 -2.95 16 20 N -0.95 -55.38 10.66 21.65 0.23 -55.15 16 21 Si 0.98 44.47 29.56 68.60 2.03 46.50 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 25 C 0.16 7.32 5.16 86.93 0.45 7.77 16 26 C 0.10 3.39 3.90 32.06 0.12 3.51 16 27 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 28 O -0.57 -17.77 13.47 -148.98 -2.01 -19.78 16 29 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.12 2.84 5.40 -2.39 -0.01 2.82 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.22 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.19 2.40 7.59 -2.91 -0.02 2.38 16 38 H 0.42 8.13 7.36 -92.70 -0.68 7.44 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.92 8.06 -2.39 -0.02 1.90 16 41 H 0.04 1.30 7.77 -2.39 -0.02 1.28 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.00 0.16 8.07 -2.39 -0.02 0.14 16 45 H 0.04 2.12 6.92 -2.39 -0.02 2.10 16 46 H 0.39 9.37 9.12 -74.06 -0.68 8.69 16 Total: -1.00 -71.66 377.11 -0.06 -71.72 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.36 Total: 25.78 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.59 Total: 15.27 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.26 Total: -121.33 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -2.07 Total: -37.94 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.66 -0.06 -71.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958096418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.994 kcal (2) G-P(sol) polarization free energy of solvation -71.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds