Wall clock time and date at job start Tue Mar 31 2020 13:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46989 * 2 1 4 4 N 1.46500 * 109.47640 * 120.00080 * 2 1 3 5 5 N 1.28443 * 125.18773 * 307.75441 * 4 2 1 6 6 C 1.30861 * 110.92625 * 180.27366 * 5 4 2 7 7 C 1.39669 * 107.86449 * 359.72089 * 6 5 4 8 8 C 1.36596 * 125.19286 * 127.53785 * 4 2 1 9 9 C 1.47156 * 126.88394 * 0.02562 * 8 4 2 10 10 O 1.21636 * 120.00259 * 5.23413 * 9 8 4 11 11 N 1.34775 * 120.00184 * 185.23503 * 9 8 4 12 12 C 1.46502 * 119.99882 * 175.34246 * 11 9 8 13 13 C 1.53009 * 109.46798 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.77855 * 51.76289 * 13 12 11 15 15 C 1.54324 * 110.85101 * 288.69216 * 13 12 11 16 16 N 1.47021 * 107.26595 * 219.67297 * 15 13 12 17 17 C 1.36940 * 125.64757 * 178.84918 * 16 15 13 18 18 H 1.08002 * 120.00277 * 346.43455 * 17 16 15 19 19 C 1.38815 * 119.99833 * 166.42980 * 17 16 15 20 20 N 1.31621 * 119.99342 * 158.33381 * 19 17 16 21 21 Si 1.86793 * 120.00220 * 338.33804 * 19 17 16 22 22 H 1.48502 * 109.47175 * 89.99775 * 21 19 17 23 23 H 1.48504 * 109.47303 * 209.99745 * 21 19 17 24 24 H 1.48505 * 109.47185 * 329.99674 * 21 19 17 25 25 C 1.47420 * 108.70463 * 358.58711 * 16 15 13 26 26 C 1.54913 * 104.82895 * 24.35261 * 25 16 15 27 27 H 1.09006 * 110.99938 * 81.06883 * 26 25 16 28 28 O 1.42903 * 111.00359 * 204.87429 * 26 25 16 29 29 H 1.09005 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47169 * 299.99577 * 1 2 3 31 31 H 1.09003 * 109.47347 * 60.00022 * 1 2 3 32 32 H 1.09000 * 109.47169 * 240.00423 * 2 1 3 33 33 H 1.09004 * 109.46888 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47057 * 300.00155 * 3 2 1 35 35 H 1.09000 * 109.46820 * 60.00209 * 3 2 1 36 36 H 1.08006 * 126.06989 * 179.74740 * 6 5 4 37 37 H 1.07995 * 127.32677 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00387 * 355.34252 * 11 9 8 39 39 H 1.08994 * 109.47141 * 60.00445 * 12 11 9 40 40 H 1.09000 * 109.47423 * 299.99806 * 12 11 9 41 41 H 1.09007 * 109.99185 * 100.19653 * 15 13 12 42 42 H 1.09005 * 109.78400 * 339.02959 * 15 13 12 43 43 H 0.96995 * 120.00767 * 5.09760 * 20 19 17 44 44 H 1.09001 * 110.36715 * 143.19408 * 25 16 15 45 45 H 1.08999 * 110.36486 * 265.41098 * 25 16 15 46 46 H 0.96695 * 114.00144 * 298.55226 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.6593 -0.4279 2.4010 6 6 2.2726 -1.2097 3.2525 7 6 3.1048 -2.0648 2.5265 8 6 2.9221 -1.7149 1.1999 9 6 3.5758 -2.3203 0.0287 10 8 3.3998 -1.8476 -1.0781 11 7 4.3695 -3.3987 0.1824 12 6 4.9382 -4.0631 -0.9929 13 6 5.7943 -5.2491 -0.5439 14 1 5.2348 -5.8961 0.1318 15 6 7.0967 -4.7637 0.1268 16 7 8.1763 -5.6565 -0.3192 17 6 9.4955 -5.5512 0.0325 18 1 9.8582 -4.6502 0.5050 19 6 10.3667 -6.6025 -0.2181 20 7 11.6620 -6.3807 -0.2903 21 14 9.7005 -8.3317 -0.4530 22 1 9.4077 -8.5583 -1.8911 23 1 10.7105 -9.3181 0.0079 24 1 8.4539 -8.4936 0.3375 25 6 7.6023 -6.6876 -1.2028 26 6 6.3094 -6.0494 -1.7692 27 1 6.5348 -5.3847 -2.6033 28 8 5.3701 -7.0538 -2.1577 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.1556 -1.1965 4.3262 37 1 3.7526 -2.8355 2.9171 38 1 4.5642 -3.7349 1.0712 39 1 5.5578 -3.3568 -1.5453 40 1 4.1322 -4.4188 -1.6348 41 1 6.9985 -4.8137 1.2113 42 1 7.3110 -3.7402 -0.1812 43 1 12.0147 -5.4983 -0.0957 44 1 8.2948 -6.9229 -2.0109 45 1 7.3656 -7.5862 -0.6331 46 1 5.6892 -7.6417 -2.8560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958096419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:39 Heat of formation + Delta-G solvation = 17.901814 kcal Electronic energy + Delta-G solvation = -27499.593102 eV Core-core repulsion = 23619.860452 eV Total energy + Delta-G solvation = -3879.732651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.76826 -39.69874 -38.54360 -36.10680 -35.46007 -34.87071 -32.55381 -31.38926 -30.56623 -29.99043 -27.93991 -27.65397 -26.03243 -23.95779 -23.15266 -22.64582 -21.28594 -20.92465 -20.15536 -19.56255 -18.10980 -17.50564 -17.23140 -16.36424 -16.24394 -15.85056 -15.29020 -15.16963 -15.04319 -14.54110 -14.35020 -14.17220 -13.75023 -13.70229 -13.38586 -13.24377 -13.20805 -12.59174 -12.55619 -12.52859 -12.45529 -12.30916 -11.73297 -11.61098 -11.32899 -11.23500 -10.98504 -10.96246 -10.71919 -10.22844 -10.12345 -9.88607 -9.48206 -9.43730 -9.27423 -9.26483 -9.10243 -8.62879 -7.17222 -6.38870 -3.31073 1.07489 2.12757 2.43423 3.02087 3.04985 3.32386 3.45218 3.59734 4.19245 4.24299 4.40516 4.51516 4.55085 4.66303 4.71208 4.87735 4.90281 4.92702 5.06677 5.18305 5.21989 5.25048 5.34201 5.36400 5.42959 5.50397 5.52264 5.54601 5.59770 5.70677 5.77704 5.81579 5.92415 6.01936 6.19782 6.29795 6.31832 6.42127 6.50052 6.56315 6.60596 7.25153 7.58632 7.80167 7.85793 7.96034 8.25889 8.95123 9.48506 10.14220 11.09223 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.002701 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.316181 B =10364.216057 C =10801.172083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.127 3.873 3 C -0.158 4.158 4 N -0.249 5.249 5 N -0.275 5.275 6 C -0.006 4.006 7 C -0.188 4.188 8 C -0.038 4.038 9 C 0.591 3.409 10 O -0.544 6.544 11 N -0.707 5.707 12 C 0.135 3.865 13 C -0.106 4.106 14 H 0.092 0.908 15 C 0.140 3.860 16 N -0.604 5.604 17 C -0.328 4.328 18 H 0.077 0.923 19 C -0.021 4.021 20 N -0.922 5.922 21 Si 1.068 2.932 22 H -0.295 1.295 23 H -0.299 1.299 24 H -0.284 1.284 25 C 0.072 3.928 26 C 0.098 3.902 27 H 0.072 0.928 28 O -0.565 6.565 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.406 0.594 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.263 0.737 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.728 9.109 1.369 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 C -0.216 4.216 4 N -0.038 5.038 5 N -0.108 5.108 6 C -0.182 4.182 7 C -0.217 4.217 8 C -0.167 4.167 9 C 0.377 3.623 10 O -0.422 6.422 11 N -0.357 5.357 12 C 0.012 3.988 13 C -0.125 4.125 14 H 0.110 0.890 15 C 0.014 3.986 16 N -0.333 5.333 17 C -0.456 4.456 18 H 0.095 0.905 19 C -0.221 4.221 20 N -0.562 5.562 21 Si 0.900 3.100 22 H -0.223 1.223 23 H -0.226 1.226 24 H -0.211 1.211 25 C -0.053 4.053 26 C 0.038 3.962 27 H 0.089 0.911 28 O -0.370 6.370 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.203 0.797 37 H 0.179 0.821 38 H 0.241 0.759 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -22.495 9.150 0.485 24.290 hybrid contribution 0.708 0.454 0.667 1.074 sum -21.787 9.604 1.153 23.838 Atomic orbital electron populations 1.22096 0.92753 1.03113 1.03605 1.22098 0.95991 0.94577 0.84623 1.22119 1.02150 0.93942 1.03410 1.45998 1.28673 1.23301 1.05782 1.73117 1.23221 1.24484 0.89954 1.23562 0.98493 0.96177 0.99955 1.22303 1.04529 1.04074 0.90823 1.21406 1.01713 0.97773 0.95805 1.16898 0.78757 0.80129 0.86562 1.90730 1.63174 1.62220 1.26108 1.45687 1.49083 1.29680 1.11280 1.21474 0.96998 0.93460 0.86877 1.22442 0.96915 0.95493 0.97689 0.88991 1.21444 0.85911 0.94663 0.96594 1.44612 1.04114 1.31326 1.53251 1.20072 0.81744 1.01931 1.41815 0.90500 1.25927 0.94365 1.02916 0.98926 1.70894 1.12267 1.25910 1.47167 0.83840 0.74079 0.76118 0.75943 1.22311 1.22640 1.21072 1.22798 0.93830 0.93853 0.94869 1.22936 0.88634 0.89264 0.95382 0.91062 1.86417 1.43300 1.47059 1.60215 0.92034 0.90999 0.90271 0.84754 0.91843 0.90188 0.91370 0.79737 0.82139 0.75885 0.90650 0.90648 0.94972 0.94705 0.92639 0.91886 0.93687 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.27 37.16 0.34 -0.94 16 2 C 0.13 1.29 3.51 -67.93 -0.24 1.05 16 3 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 4 N -0.25 -2.96 3.10 -50.69 -0.16 -3.12 16 5 N -0.28 -3.22 11.48 30.59 0.35 -2.87 16 6 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 7 C -0.19 -1.91 10.50 -38.98 -0.41 -2.32 16 8 C -0.04 -0.47 6.96 -82.06 -0.57 -1.04 16 9 C 0.59 7.89 7.79 -12.64 -0.10 7.79 16 10 O -0.54 -8.48 14.42 5.25 0.08 -8.41 16 11 N -0.71 -8.51 5.46 -61.46 -0.34 -8.84 16 12 C 0.14 1.81 5.02 -4.04 -0.02 1.79 16 13 C -0.11 -1.60 2.69 -88.78 -0.24 -1.84 16 14 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 15 C 0.14 2.59 6.76 -3.06 -0.02 2.57 16 16 N -0.60 -14.15 3.27 -170.07 -0.56 -14.71 16 17 C -0.33 -9.14 10.47 -15.06 -0.16 -9.29 16 18 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 19 C -0.02 -0.60 5.45 -17.43 -0.09 -0.70 16 20 N -0.92 -28.36 13.70 55.49 0.76 -27.60 16 21 Si 1.07 25.88 24.68 -169.99 -4.20 21.68 16 22 H -0.30 -6.67 6.62 56.52 0.37 -6.29 16 23 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.51 5.95 56.52 0.34 -6.17 16 25 C 0.07 1.48 4.40 -2.53 -0.01 1.47 16 26 C 0.10 1.58 3.88 -24.58 -0.10 1.49 16 27 H 0.07 1.10 8.05 -51.93 -0.42 0.69 16 28 O -0.56 -8.05 13.48 -35.23 -0.47 -8.53 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.13 1.55 5.43 -51.93 -0.28 1.27 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.19 1.25 8.06 -52.48 -0.42 0.82 16 37 H 0.16 1.22 7.59 -52.49 -0.40 0.82 16 38 H 0.41 4.11 7.50 -40.82 -0.31 3.80 16 39 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.04 0.66 7.69 -51.93 -0.40 0.26 16 43 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 44 H 0.06 1.36 6.09 -51.93 -0.32 1.04 16 45 H 0.05 0.96 5.42 -51.93 -0.28 0.68 16 46 H 0.38 3.90 9.11 45.56 0.42 4.32 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -34.45 370.34 -6.71 -41.16 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.29 Total: 6.93 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.47 Total: -1.27 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.06 Total: -57.14 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.40 Total: -16.94 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -4.20 Total: 21.68 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.45 -6.71 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958096419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.060 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds