Wall clock time and date at job start Tue Mar 31 2020 13:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46989 * 2 1 4 4 N 1.46500 * 109.47640 * 120.00080 * 2 1 3 5 5 N 1.28443 * 125.18773 * 307.75441 * 4 2 1 6 6 C 1.30861 * 110.92625 * 180.27366 * 5 4 2 7 7 C 1.39669 * 107.86449 * 359.72089 * 6 5 4 8 8 C 1.36596 * 125.19286 * 127.53785 * 4 2 1 9 9 C 1.47156 * 126.88394 * 0.02562 * 8 4 2 10 10 O 1.21636 * 120.00259 * 5.23413 * 9 8 4 11 11 N 1.34775 * 120.00184 * 185.23503 * 9 8 4 12 12 C 1.46502 * 119.99882 * 175.34246 * 11 9 8 13 13 C 1.53009 * 109.46798 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.77855 * 51.76289 * 13 12 11 15 15 C 1.54324 * 110.85101 * 288.69216 * 13 12 11 16 16 N 1.47021 * 107.26595 * 219.67297 * 15 13 12 17 17 C 1.36940 * 125.64757 * 178.84918 * 16 15 13 18 18 H 1.08002 * 120.00277 * 346.43455 * 17 16 15 19 19 C 1.38815 * 119.99833 * 166.42980 * 17 16 15 20 20 N 1.31621 * 119.99342 * 158.33381 * 19 17 16 21 21 Si 1.86793 * 120.00220 * 338.33804 * 19 17 16 22 22 H 1.48502 * 109.47175 * 89.99775 * 21 19 17 23 23 H 1.48504 * 109.47303 * 209.99745 * 21 19 17 24 24 H 1.48505 * 109.47185 * 329.99674 * 21 19 17 25 25 C 1.47420 * 108.70463 * 358.58711 * 16 15 13 26 26 C 1.54913 * 104.82895 * 24.35261 * 25 16 15 27 27 H 1.09006 * 110.99938 * 81.06883 * 26 25 16 28 28 O 1.42903 * 111.00359 * 204.87429 * 26 25 16 29 29 H 1.09005 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47169 * 299.99577 * 1 2 3 31 31 H 1.09003 * 109.47347 * 60.00022 * 1 2 3 32 32 H 1.09000 * 109.47169 * 240.00423 * 2 1 3 33 33 H 1.09004 * 109.46888 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47057 * 300.00155 * 3 2 1 35 35 H 1.09000 * 109.46820 * 60.00209 * 3 2 1 36 36 H 1.08006 * 126.06989 * 179.74740 * 6 5 4 37 37 H 1.07995 * 127.32677 * 180.02562 * 7 6 5 38 38 H 0.96999 * 120.00387 * 355.34252 * 11 9 8 39 39 H 1.08994 * 109.47141 * 60.00445 * 12 11 9 40 40 H 1.09000 * 109.47423 * 299.99806 * 12 11 9 41 41 H 1.09007 * 109.99185 * 100.19653 * 15 13 12 42 42 H 1.09005 * 109.78400 * 339.02959 * 15 13 12 43 43 H 0.96995 * 120.00767 * 5.09760 * 20 19 17 44 44 H 1.09001 * 110.36715 * 143.19408 * 25 16 15 45 45 H 1.08999 * 110.36486 * 265.41098 * 25 16 15 46 46 H 0.96695 * 114.00144 * 298.55226 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.6593 -0.4279 2.4010 6 6 2.2726 -1.2097 3.2525 7 6 3.1048 -2.0648 2.5265 8 6 2.9221 -1.7149 1.1999 9 6 3.5758 -2.3203 0.0287 10 8 3.3998 -1.8476 -1.0781 11 7 4.3695 -3.3987 0.1824 12 6 4.9382 -4.0631 -0.9929 13 6 5.7943 -5.2491 -0.5439 14 1 5.2348 -5.8961 0.1318 15 6 7.0967 -4.7637 0.1268 16 7 8.1763 -5.6565 -0.3192 17 6 9.4955 -5.5512 0.0325 18 1 9.8582 -4.6502 0.5050 19 6 10.3667 -6.6025 -0.2181 20 7 11.6620 -6.3807 -0.2903 21 14 9.7005 -8.3317 -0.4530 22 1 9.4077 -8.5583 -1.8911 23 1 10.7105 -9.3181 0.0079 24 1 8.4539 -8.4936 0.3375 25 6 7.6023 -6.6876 -1.2028 26 6 6.3094 -6.0494 -1.7692 27 1 6.5348 -5.3847 -2.6033 28 8 5.3701 -7.0538 -2.1577 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.1556 -1.1965 4.3262 37 1 3.7526 -2.8355 2.9171 38 1 4.5642 -3.7349 1.0712 39 1 5.5578 -3.3568 -1.5453 40 1 4.1322 -4.4188 -1.6348 41 1 6.9985 -4.8137 1.2113 42 1 7.3110 -3.7402 -0.1812 43 1 12.0147 -5.4983 -0.0957 44 1 8.2948 -6.9229 -2.0109 45 1 7.3656 -7.5862 -0.6331 46 1 5.6892 -7.6417 -2.8560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958096419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:38 Heat of formation + Delta-G solvation = -9.728769 kcal Electronic energy + Delta-G solvation = -27500.791254 eV Core-core repulsion = 23619.860452 eV Total energy + Delta-G solvation = -3880.930803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.58538 -40.82605 -39.86848 -36.91405 -36.74899 -36.11378 -34.34470 -32.61769 -31.38348 -31.24117 -29.46562 -28.31717 -27.49413 -25.29613 -24.08812 -23.68814 -22.84229 -21.86931 -21.49386 -20.58171 -19.60643 -18.94812 -18.46880 -17.35684 -17.15760 -17.06970 -16.51948 -16.38141 -15.86124 -15.79284 -15.52620 -15.51899 -15.20949 -14.91008 -14.60675 -14.21476 -14.09280 -13.99367 -13.96072 -13.75035 -13.20416 -13.15046 -13.12533 -12.71253 -12.44598 -12.38740 -12.35196 -12.26215 -11.82159 -11.74436 -11.56907 -11.38048 -11.06879 -10.92430 -10.64353 -10.44093 -10.10645 -9.99905 -9.16710 -8.63620 -5.48784 0.18166 1.31086 1.39252 1.53962 1.64722 1.69440 2.07986 2.10025 2.52078 2.90244 3.16105 3.41319 3.43537 3.46597 3.61860 3.68009 3.84518 3.96323 3.97310 4.12627 4.15486 4.25100 4.27866 4.42699 4.55023 4.57816 4.59797 4.66940 4.69958 4.72248 4.78815 4.83298 4.85603 4.92043 5.00440 5.08292 5.12057 5.16521 5.28562 5.55153 5.56236 5.77516 6.08584 6.29901 6.77855 6.85252 6.94319 7.08804 7.43827 8.07564 8.84661 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021847 B = 0.002701 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.316181 B =10364.216057 C =10801.172083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.119 3.881 3 C -0.152 4.152 4 N -0.257 5.257 5 N -0.291 5.291 6 C -0.010 4.010 7 C -0.179 4.179 8 C -0.064 4.064 9 C 0.591 3.409 10 O -0.572 6.572 11 N -0.698 5.698 12 C 0.147 3.853 13 C -0.089 4.089 14 H 0.107 0.893 15 C 0.137 3.863 16 N -0.627 5.627 17 C -0.316 4.316 18 H 0.044 0.956 19 C -0.079 4.079 20 N -0.959 5.959 21 Si 1.109 2.891 22 H -0.269 1.269 23 H -0.309 1.309 24 H -0.262 1.262 25 C 0.064 3.936 26 C 0.114 3.886 27 H 0.080 0.920 28 O -0.562 6.562 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.216 0.784 37 H 0.186 0.814 38 H 0.416 0.584 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.248 0.752 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.552 8.360 1.517 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.209 4.209 4 N -0.046 5.046 5 N -0.123 5.123 6 C -0.184 4.184 7 C -0.208 4.208 8 C -0.193 4.193 9 C 0.377 3.623 10 O -0.452 6.452 11 N -0.350 5.350 12 C 0.023 3.977 13 C -0.108 4.108 14 H 0.125 0.875 15 C 0.012 3.988 16 N -0.355 5.355 17 C -0.445 4.445 18 H 0.062 0.938 19 C -0.272 4.272 20 N -0.603 5.603 21 Si 0.934 3.066 22 H -0.195 1.195 23 H -0.238 1.238 24 H -0.187 1.187 25 C -0.061 4.061 26 C 0.053 3.947 27 H 0.097 0.903 28 O -0.369 6.369 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.203 0.797 38 H 0.254 0.746 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -25.369 8.407 0.629 26.733 hybrid contribution 1.563 0.787 0.672 1.874 sum -23.806 9.193 1.301 25.552 Atomic orbital electron populations 1.22053 0.91223 1.02836 1.04612 1.22204 0.97222 0.94828 0.83785 1.22082 1.00941 0.93428 1.04491 1.46196 1.28814 1.23458 1.06162 1.73107 1.23858 1.25197 0.90183 1.24159 0.97692 0.95353 1.01238 1.22686 1.04133 1.04097 0.89904 1.21459 1.02814 0.98818 0.96164 1.17072 0.78566 0.80045 0.86575 1.90717 1.64192 1.63076 1.27259 1.45560 1.48604 1.29300 1.11503 1.21257 0.96675 0.92553 0.87201 1.22280 0.95174 0.96041 0.97280 0.87526 1.21579 0.86302 0.93546 0.97378 1.44666 1.03658 1.32860 1.54348 1.19945 0.84252 1.00378 1.39892 0.93822 1.27213 0.93987 1.06684 0.99354 1.71013 1.13773 1.25071 1.50436 0.83340 0.74051 0.71401 0.77763 1.19486 1.23812 1.18692 1.22945 0.95554 0.93488 0.94097 1.22664 0.86873 0.89431 0.95751 0.90267 1.86398 1.42365 1.47033 1.61153 0.92894 0.91154 0.88035 0.86339 0.93588 0.87968 0.91379 0.76744 0.79651 0.74639 0.91754 0.89993 0.94173 0.95330 0.94289 0.93097 0.93508 0.75092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.27 71.98 0.67 -1.60 16 2 C 0.12 2.37 3.51 44.99 0.16 2.52 16 3 C -0.15 -2.56 9.48 71.98 0.68 -1.88 16 4 N -0.26 -5.91 3.10 -314.29 -0.97 -6.88 16 5 N -0.29 -6.42 11.48 -57.14 -0.66 -7.07 16 6 C -0.01 -0.17 12.03 85.18 1.02 0.86 16 7 C -0.18 -3.23 10.50 22.66 0.24 -3.00 16 8 C -0.06 -1.50 6.96 40.79 0.28 -1.21 16 9 C 0.59 15.16 7.79 86.59 0.67 15.84 16 10 O -0.57 -17.65 14.42 -4.15 -0.06 -17.71 16 11 N -0.70 -15.43 5.46 -466.62 -2.55 -17.98 16 12 C 0.15 3.59 5.02 86.38 0.43 4.02 16 13 C -0.09 -2.41 2.69 -9.60 -0.03 -2.44 16 14 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 15 C 0.14 4.87 6.76 86.73 0.59 5.46 16 16 N -0.63 -28.77 3.27 -691.97 -2.26 -31.04 16 17 C -0.32 -17.87 10.47 84.03 0.88 -16.99 16 18 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 19 C -0.08 -4.60 5.45 84.86 0.46 -4.14 16 20 N -0.96 -60.87 13.70 21.65 0.30 -60.58 16 21 Si 1.11 51.64 24.68 68.60 1.69 53.34 16 22 H -0.27 -11.27 6.62 99.48 0.66 -10.62 16 23 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 24 H -0.26 -11.09 5.95 99.48 0.59 -10.50 16 25 C 0.06 2.48 4.40 86.86 0.38 2.86 16 26 C 0.11 3.31 3.88 31.99 0.12 3.43 16 27 H 0.08 2.22 8.05 -2.38 -0.02 2.20 16 28 O -0.56 -13.68 13.48 -148.98 -2.01 -15.69 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 2.75 5.43 -2.39 -0.01 2.74 16 33 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.22 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.19 2.22 7.59 -2.91 -0.02 2.19 16 38 H 0.42 7.34 7.50 -92.71 -0.70 6.65 16 39 H 0.06 1.75 7.94 -2.39 -0.02 1.73 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.03 1.06 7.69 -2.38 -0.02 1.04 16 43 H 0.25 15.86 8.73 -92.71 -0.81 15.05 16 44 H 0.05 2.09 6.09 -2.39 -0.01 2.07 16 45 H 0.05 1.82 5.42 -2.39 -0.01 1.81 16 46 H 0.40 6.51 9.11 -74.06 -0.67 5.83 16 Total: -1.00 -76.34 370.34 -0.51 -76.85 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.56 Total: 23.03 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.57 Total: 3.73 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -6.14 Total: -123.55 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -2.07 Total: -33.40 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 1.69 Total: 53.34 kcal Total: -76.34 -0.51 -76.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958096419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.124 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds