Wall clock time and date at job start Tue Mar 31 2020 13:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47150 * 2 1 4 4 N 1.46492 * 109.47316 * 120.00776 * 2 1 3 5 5 N 1.28448 * 125.18664 * 305.37073 * 4 2 1 6 6 C 1.30858 * 110.92549 * 180.02562 * 5 4 2 7 7 C 1.39676 * 107.86652 * 359.77769 * 6 5 4 8 8 C 1.36596 * 125.19181 * 125.39698 * 4 2 1 9 9 C 1.47161 * 126.88688 * 359.94468 * 8 4 2 10 10 O 1.21626 * 119.99576 * 5.85384 * 9 8 4 11 11 N 1.34775 * 120.00249 * 185.85579 * 9 8 4 12 12 C 1.46491 * 120.00062 * 174.91747 * 11 9 8 13 13 C 1.52997 * 109.47280 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.77974 * 51.76105 * 13 12 11 15 15 C 1.54330 * 110.72059 * 288.52235 * 13 12 11 16 16 N 1.47017 * 107.27120 * 219.43864 * 15 13 12 17 17 C 1.36941 * 125.64454 * 178.98593 * 16 15 13 18 18 H 1.07996 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99725 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00132 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00104 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47085 * 59.99554 * 21 19 17 23 23 H 1.48497 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46632 * 299.99931 * 21 19 17 25 25 C 1.47426 * 108.70531 * 358.94624 * 16 15 13 26 26 C 1.54903 * 104.83153 * 24.12634 * 25 16 15 27 27 H 1.09000 * 111.03605 * 204.90592 * 26 25 16 28 28 O 1.42894 * 111.00970 * 81.06574 * 26 25 16 29 29 H 1.09009 * 109.47389 * 59.99397 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47207 * 299.99679 * 1 2 3 32 32 H 1.09004 * 109.46739 * 240.00934 * 2 1 3 33 33 H 1.08998 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47132 * 300.00595 * 3 2 1 35 35 H 1.09004 * 109.46323 * 60.00301 * 3 2 1 36 36 H 1.08009 * 126.07177 * 179.97438 * 6 5 4 37 37 H 1.07997 * 127.32584 * 180.27225 * 7 6 5 38 38 H 0.97000 * 119.99964 * 354.91919 * 11 9 8 39 39 H 1.09007 * 109.47365 * 60.00362 * 12 11 9 40 40 H 1.09000 * 109.47750 * 299.99917 * 12 11 9 41 41 H 1.08998 * 109.88401 * 338.86148 * 15 13 12 42 42 H 1.09001 * 109.87834 * 100.02413 * 15 13 12 43 43 H 0.97002 * 119.99851 * 180.02562 * 20 19 17 44 44 H 1.08995 * 110.36287 * 265.28409 * 25 16 15 45 45 H 1.09003 * 110.36639 * 142.96140 * 25 16 15 46 46 H 0.96698 * 114.00264 * 67.80104 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.6922 -0.3998 2.4038 6 6 2.2913 -1.1939 3.2540 7 6 3.0777 -2.0882 2.5240 8 6 2.8904 -1.7421 1.1970 9 6 3.5032 -2.3825 0.0222 10 8 3.3301 -1.9124 -1.0861 11 7 4.2563 -3.4898 0.1745 12 6 4.7740 -4.1911 -1.0029 13 6 5.5911 -5.4047 -0.5553 14 1 5.0201 -6.0203 0.1399 15 6 6.9262 -4.9604 0.0786 16 7 7.9590 -5.9045 -0.3723 17 6 9.2883 -5.8479 -0.0480 18 1 9.6549 -5.0591 0.5921 19 6 10.1645 -6.8046 -0.5420 20 7 9.7178 -7.7657 -1.3225 21 14 11.9777 -6.7279 -0.0991 22 1 12.1318 -6.8270 1.3745 23 1 12.6939 -7.8552 -0.7482 24 1 12.5484 -5.4408 -0.5711 25 6 7.3266 -6.9227 -1.2307 26 6 6.0490 -6.2402 -1.7799 27 1 5.2962 -6.9801 -2.0515 28 8 6.3567 -5.3951 -2.8903 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 2.1926 -1.1653 4.3291 37 1 3.7005 -2.8804 2.9124 38 1 4.4554 -3.8225 1.0636 39 1 5.4100 -3.5171 -1.5768 40 1 3.9417 -4.5221 -1.6239 41 1 7.1759 -3.9521 -0.2515 42 1 6.8478 -4.9881 1.1655 43 1 10.3301 -8.4343 -1.6674 44 1 7.0642 -7.8032 -0.6443 45 1 7.9926 -7.1956 -2.0492 46 1 6.6476 -5.8726 -3.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958096421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:45 Heat of formation + Delta-G solvation = 19.598911 kcal Electronic energy + Delta-G solvation = -27543.532600 eV Core-core repulsion = 23663.873542 eV Total energy + Delta-G solvation = -3879.659059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.70403 -39.53023 -38.21676 -36.03084 -34.91308 -34.54953 -32.34493 -31.15035 -30.50443 -29.50543 -27.74932 -27.60729 -25.65841 -24.17524 -23.18765 -22.70484 -21.03614 -20.38446 -20.04781 -19.32950 -17.94796 -17.33195 -16.43901 -16.23446 -16.13609 -15.50535 -15.01592 -14.98172 -14.85422 -14.35425 -14.20785 -14.10557 -13.82944 -13.31173 -13.22473 -13.14518 -12.73165 -12.54122 -12.45177 -12.36825 -11.99142 -11.68479 -11.53972 -11.42386 -11.26380 -10.90813 -10.81039 -10.70445 -10.40621 -10.25205 -10.07879 -9.86407 -9.82269 -9.39331 -9.20142 -9.13861 -8.95639 -8.69526 -6.86390 -5.70620 -3.10713 1.15531 2.20179 2.49064 3.14579 3.16740 3.38663 3.42925 3.43978 4.25061 4.43601 4.49590 4.60430 4.70320 4.71953 4.94000 4.97546 5.10127 5.22754 5.28017 5.29852 5.35093 5.40363 5.40911 5.48866 5.55828 5.57967 5.59535 5.82207 5.85213 5.87052 6.00721 6.08342 6.29112 6.32011 6.38382 6.44140 6.60659 6.62357 6.82281 7.25614 7.39287 7.55605 7.73258 7.93107 8.07805 8.21195 8.34921 9.16945 9.78333 10.41982 11.34215 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002631 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.285382 B =10640.383409 C =11202.053083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.126 3.874 3 C -0.158 4.158 4 N -0.249 5.249 5 N -0.277 5.277 6 C -0.007 4.007 7 C -0.190 4.190 8 C -0.037 4.037 9 C 0.589 3.411 10 O -0.543 6.543 11 N -0.708 5.708 12 C 0.142 3.858 13 C -0.107 4.107 14 H 0.087 0.913 15 C 0.144 3.856 16 N -0.597 5.597 17 C -0.219 4.219 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.926 5.926 21 Si 0.916 3.084 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.126 3.874 26 C 0.082 3.918 27 H 0.055 0.945 28 O -0.558 6.558 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.404 0.596 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.029 0.971 42 H 0.020 0.980 43 H 0.252 0.748 44 H 0.019 0.981 45 H 0.112 0.888 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.787 10.458 3.589 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.038 5.038 5 N -0.109 5.109 6 C -0.183 4.183 7 C -0.219 4.219 8 C -0.165 4.165 9 C 0.374 3.626 10 O -0.422 6.422 11 N -0.359 5.359 12 C 0.019 3.981 13 C -0.126 4.126 14 H 0.105 0.895 15 C 0.018 3.982 16 N -0.323 5.323 17 C -0.347 4.347 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.575 5.575 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.001 3.999 26 C 0.022 3.978 27 H 0.073 0.927 28 O -0.363 6.363 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.202 0.798 37 H 0.178 0.822 38 H 0.239 0.761 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.130 0.870 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.669 12.095 2.965 22.441 hybrid contribution 1.801 -1.390 0.591 2.351 sum -16.868 10.705 3.556 20.292 Atomic orbital electron populations 1.22100 0.92836 1.03071 1.03549 1.22108 0.95923 0.94618 0.84722 1.22112 1.02152 0.93961 1.03376 1.45988 1.30187 1.22016 1.05596 1.73108 1.23155 1.24781 0.89883 1.23550 0.99238 0.95556 0.99913 1.22296 1.05000 1.03787 0.90808 1.21477 1.02380 0.96790 0.95868 1.16906 0.78741 0.80439 0.86532 1.90726 1.61871 1.63511 1.26076 1.45820 1.51634 1.27049 1.11353 1.21322 0.97330 0.93337 0.86071 1.22521 0.96834 0.95798 0.97447 0.89466 1.21331 0.87160 0.94119 0.95587 1.44331 1.03401 1.28309 1.56280 1.19042 0.81985 1.09225 1.24485 0.90516 1.24761 0.98377 0.97426 1.00129 1.69731 1.33255 1.16591 1.37955 0.86129 0.84432 0.77033 0.77784 1.21223 1.21572 1.21136 1.22592 0.90895 0.89769 0.96655 1.23204 0.97812 0.90970 0.85833 0.92743 1.86388 1.89391 1.37092 1.23438 0.90281 0.92055 0.91080 0.84641 0.91844 0.90222 0.91369 0.79804 0.82167 0.76144 0.89816 0.91443 0.95348 0.96233 0.93686 0.96298 0.87027 0.77766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.30 37.16 0.35 -1.00 16 2 C 0.13 1.35 3.52 -67.93 -0.24 1.11 16 3 C -0.16 -1.45 9.45 37.16 0.35 -1.10 16 4 N -0.25 -3.08 3.09 -50.69 -0.16 -3.24 16 5 N -0.28 -3.34 11.52 30.59 0.35 -2.99 16 6 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 7 C -0.19 -2.00 10.50 -38.98 -0.41 -2.41 16 8 C -0.04 -0.47 6.96 -82.06 -0.57 -1.04 16 9 C 0.59 8.38 7.79 -12.64 -0.10 8.28 16 10 O -0.54 -9.07 14.42 5.25 0.08 -9.00 16 11 N -0.71 -9.22 5.46 -61.47 -0.34 -9.56 16 12 C 0.14 2.14 4.50 -4.05 -0.02 2.12 16 13 C -0.11 -1.73 2.89 -88.78 -0.26 -1.99 16 14 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.14 2.89 6.75 -3.06 -0.02 2.87 16 16 N -0.60 -14.89 3.39 -170.08 -0.58 -15.46 16 17 C -0.22 -6.03 10.27 -15.06 -0.15 -6.19 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.93 -26.29 10.09 55.49 0.56 -25.73 16 21 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.13 2.89 5.62 -2.53 -0.01 2.88 16 26 C 0.08 1.46 4.17 -24.58 -0.10 1.36 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 O -0.56 -9.99 12.33 -35.23 -0.43 -10.43 16 29 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.14 1.65 5.39 -51.93 -0.28 1.37 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.18 1.29 8.06 -52.48 -0.42 0.86 16 37 H 0.16 1.27 7.59 -52.49 -0.40 0.87 16 38 H 0.40 4.39 7.50 -40.82 -0.31 4.08 16 39 H 0.08 1.49 7.52 -51.93 -0.39 1.10 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 46 H 0.38 5.48 9.12 45.56 0.42 5.89 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -33.25 374.81 -7.66 -40.92 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.28 Total: 8.80 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.49 Total: 4.19 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.16 Total: -56.98 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.36 Total: -19.43 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.25 -7.66 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958096421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.517 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds