Wall clock time and date at job start Tue Mar 31 2020 13:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47150 * 2 1 4 4 N 1.46492 * 109.47316 * 120.00776 * 2 1 3 5 5 N 1.28448 * 125.18664 * 305.37073 * 4 2 1 6 6 C 1.30858 * 110.92549 * 180.02562 * 5 4 2 7 7 C 1.39676 * 107.86652 * 359.77769 * 6 5 4 8 8 C 1.36596 * 125.19181 * 125.39698 * 4 2 1 9 9 C 1.47161 * 126.88688 * 359.94468 * 8 4 2 10 10 O 1.21626 * 119.99576 * 5.85384 * 9 8 4 11 11 N 1.34775 * 120.00249 * 185.85579 * 9 8 4 12 12 C 1.46491 * 120.00062 * 174.91747 * 11 9 8 13 13 C 1.52997 * 109.47280 * 179.97438 * 12 11 9 14 14 H 1.09000 * 110.77974 * 51.76105 * 13 12 11 15 15 C 1.54330 * 110.72059 * 288.52235 * 13 12 11 16 16 N 1.47017 * 107.27120 * 219.43864 * 15 13 12 17 17 C 1.36941 * 125.64454 * 178.98593 * 16 15 13 18 18 H 1.07996 * 120.00431 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99725 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00132 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00104 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47085 * 59.99554 * 21 19 17 23 23 H 1.48497 * 109.47379 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46632 * 299.99931 * 21 19 17 25 25 C 1.47426 * 108.70531 * 358.94624 * 16 15 13 26 26 C 1.54903 * 104.83153 * 24.12634 * 25 16 15 27 27 H 1.09000 * 111.03605 * 204.90592 * 26 25 16 28 28 O 1.42894 * 111.00970 * 81.06574 * 26 25 16 29 29 H 1.09009 * 109.47389 * 59.99397 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47207 * 299.99679 * 1 2 3 32 32 H 1.09004 * 109.46739 * 240.00934 * 2 1 3 33 33 H 1.08998 * 109.47070 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47132 * 300.00595 * 3 2 1 35 35 H 1.09004 * 109.46323 * 60.00301 * 3 2 1 36 36 H 1.08009 * 126.07177 * 179.97438 * 6 5 4 37 37 H 1.07997 * 127.32584 * 180.27225 * 7 6 5 38 38 H 0.97000 * 119.99964 * 354.91919 * 11 9 8 39 39 H 1.09007 * 109.47365 * 60.00362 * 12 11 9 40 40 H 1.09000 * 109.47750 * 299.99917 * 12 11 9 41 41 H 1.08998 * 109.88401 * 338.86148 * 15 13 12 42 42 H 1.09001 * 109.87834 * 100.02413 * 15 13 12 43 43 H 0.97002 * 119.99851 * 180.02562 * 20 19 17 44 44 H 1.08995 * 110.36287 * 265.28409 * 25 16 15 45 45 H 1.09003 * 110.36639 * 142.96140 * 25 16 15 46 46 H 0.96698 * 114.00264 * 67.80104 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 7 1.6922 -0.3998 2.4038 6 6 2.2913 -1.1939 3.2540 7 6 3.0777 -2.0882 2.5240 8 6 2.8904 -1.7421 1.1970 9 6 3.5032 -2.3825 0.0222 10 8 3.3301 -1.9124 -1.0861 11 7 4.2563 -3.4898 0.1745 12 6 4.7740 -4.1911 -1.0029 13 6 5.5911 -5.4047 -0.5553 14 1 5.0201 -6.0203 0.1399 15 6 6.9262 -4.9604 0.0786 16 7 7.9590 -5.9045 -0.3723 17 6 9.2883 -5.8479 -0.0480 18 1 9.6549 -5.0591 0.5921 19 6 10.1645 -6.8046 -0.5420 20 7 9.7178 -7.7657 -1.3225 21 14 11.9777 -6.7279 -0.0991 22 1 12.1318 -6.8270 1.3745 23 1 12.6939 -7.8552 -0.7482 24 1 12.5484 -5.4408 -0.5711 25 6 7.3266 -6.9227 -1.2307 26 6 6.0490 -6.2402 -1.7799 27 1 5.2962 -6.9801 -2.0515 28 8 6.3567 -5.3951 -2.8903 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 2.1926 -1.1653 4.3291 37 1 3.7005 -2.8804 2.9124 38 1 4.4554 -3.8225 1.0636 39 1 5.4100 -3.5171 -1.5768 40 1 3.9417 -4.5221 -1.6239 41 1 7.1759 -3.9521 -0.2515 42 1 6.8478 -4.9881 1.1655 43 1 10.3301 -8.4343 -1.6674 44 1 7.0642 -7.8032 -0.6443 45 1 7.9926 -7.1956 -2.0492 46 1 6.6476 -5.8726 -3.6793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958096421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:44 Heat of formation + Delta-G solvation = -5.285917 kcal Electronic energy + Delta-G solvation = -27544.611688 eV Core-core repulsion = 23663.873542 eV Total energy + Delta-G solvation = -3880.738146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.55870 -40.72519 -39.67897 -36.86231 -36.30336 -36.02215 -34.02716 -32.33285 -31.31446 -30.99815 -29.37492 -28.30351 -27.29776 -25.64493 -24.16581 -23.70940 -22.30803 -21.72214 -21.37631 -20.44317 -19.15331 -18.88069 -17.99140 -17.30645 -17.06985 -16.80341 -16.53412 -16.16998 -15.79558 -15.75263 -15.56480 -15.34593 -14.89223 -14.63323 -14.41336 -14.10105 -13.98640 -13.90448 -13.66614 -13.18773 -13.15936 -13.12388 -13.01964 -12.62013 -12.43270 -12.37768 -12.35191 -12.03139 -11.86026 -11.82228 -11.78928 -11.58202 -11.01791 -10.78952 -10.64324 -10.39720 -10.07019 -9.96478 -8.83930 -7.77595 -5.19588 0.21361 1.34389 1.46890 1.49313 1.55450 1.67510 2.13463 2.14221 2.49889 3.28912 3.35889 3.48108 3.53754 3.62374 3.86333 3.91294 3.96778 3.98772 4.01919 4.15646 4.18653 4.45473 4.55861 4.59340 4.60526 4.63172 4.66033 4.71253 4.82981 4.86328 4.88152 4.92939 5.02543 5.10666 5.13951 5.27280 5.37001 5.41633 5.52684 5.58805 5.79338 5.79919 6.30554 6.36266 6.96920 7.01322 7.11575 7.12804 7.79833 8.42127 9.24193 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002631 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.285382 B =10640.383409 C =11202.053083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.118 3.882 3 C -0.151 4.151 4 N -0.257 5.257 5 N -0.291 5.291 6 C -0.009 4.009 7 C -0.178 4.178 8 C -0.064 4.064 9 C 0.589 3.411 10 O -0.574 6.574 11 N -0.698 5.698 12 C 0.158 3.842 13 C -0.090 4.090 14 H 0.118 0.882 15 C 0.141 3.859 16 N -0.621 5.621 17 C -0.237 4.237 18 H 0.076 0.924 19 C -0.065 4.065 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.126 3.874 26 C 0.093 3.907 27 H 0.091 0.909 28 O -0.570 6.570 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.217 0.783 37 H 0.187 0.813 38 H 0.416 0.584 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.012 0.988 42 H 0.034 0.966 43 H 0.247 0.753 44 H 0.002 0.998 45 H 0.079 0.921 46 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.100 10.881 4.897 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 C -0.209 4.209 4 N -0.047 5.047 5 N -0.124 5.124 6 C -0.184 4.184 7 C -0.207 4.207 8 C -0.192 4.192 9 C 0.375 3.625 10 O -0.455 6.455 11 N -0.349 5.349 12 C 0.035 3.965 13 C -0.110 4.110 14 H 0.136 0.864 15 C 0.016 3.984 16 N -0.347 5.347 17 C -0.366 4.366 18 H 0.094 0.906 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.805 3.195 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.208 1.208 25 C 0.001 3.999 26 C 0.033 3.967 27 H 0.109 0.891 28 O -0.377 6.377 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.204 0.796 38 H 0.253 0.747 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.097 0.903 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -19.998 12.525 4.293 23.984 hybrid contribution 2.210 -1.487 0.216 2.673 sum -17.788 11.038 4.509 21.414 Atomic orbital electron populations 1.22055 0.91217 1.02810 1.04605 1.22205 0.97224 0.94890 0.83839 1.22075 1.00921 0.93395 1.04516 1.46178 1.30331 1.22141 1.06005 1.73101 1.23741 1.25471 0.90051 1.24166 0.98307 0.94675 1.01247 1.22691 1.04397 1.03884 0.89764 1.21467 1.03716 0.97903 0.96117 1.17125 0.78423 0.80314 0.86632 1.90713 1.62995 1.64386 1.27417 1.45636 1.51175 1.26705 1.11426 1.20985 0.96842 0.92211 0.86487 1.22465 0.95189 0.96348 0.96948 0.86395 1.21469 0.87992 0.92428 0.96534 1.44638 1.03596 1.29525 1.56904 1.19375 0.83755 1.09133 1.24341 0.90618 1.25538 1.02152 0.97482 1.00547 1.69978 1.34014 1.16976 1.38761 0.85177 0.79857 0.76745 0.77707 1.20396 1.21831 1.20803 1.22454 0.92610 0.89635 0.95208 1.23112 0.95865 0.91552 0.86182 0.89125 1.86375 1.89421 1.37847 1.24076 0.88070 0.92920 0.91105 0.86463 0.93626 0.88012 0.91244 0.76650 0.79553 0.74681 0.92804 0.90536 0.96971 0.94792 0.94322 0.97972 0.90338 0.76283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.30 71.98 0.67 -1.72 16 2 C 0.12 2.48 3.52 44.99 0.16 2.63 16 3 C -0.15 -2.69 9.45 71.98 0.68 -2.01 16 4 N -0.26 -6.15 3.09 -314.29 -0.97 -7.12 16 5 N -0.29 -6.58 11.52 -57.13 -0.66 -7.24 16 6 C -0.01 -0.16 12.03 85.19 1.02 0.86 16 7 C -0.18 -3.32 10.50 22.66 0.24 -3.09 16 8 C -0.06 -1.56 6.96 40.79 0.28 -1.27 16 9 C 0.59 16.32 7.79 86.59 0.67 17.00 16 10 O -0.57 -19.31 14.42 -4.11 -0.06 -19.37 16 11 N -0.70 -17.03 5.46 -466.65 -2.55 -19.57 16 12 C 0.16 4.52 4.50 86.38 0.39 4.91 16 13 C -0.09 -2.74 2.89 -9.60 -0.03 -2.77 16 14 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 15 C 0.14 5.53 6.75 86.73 0.59 6.12 16 16 N -0.62 -31.06 3.39 -692.00 -2.35 -33.41 16 17 C -0.24 -13.18 10.27 84.03 0.86 -12.31 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 20 N -0.95 -54.85 10.09 21.65 0.22 -54.63 16 21 Si 0.98 45.31 29.55 68.60 2.03 47.34 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.13 5.81 5.62 86.85 0.49 6.30 16 26 C 0.09 3.17 4.17 31.99 0.13 3.31 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 28 O -0.57 -19.96 12.33 -148.98 -1.84 -21.80 16 29 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.13 8.09 -2.39 -0.02 1.12 16 32 H 0.12 2.91 5.39 -2.39 -0.01 2.90 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.28 16 35 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.19 2.30 7.59 -2.91 -0.02 2.28 16 38 H 0.42 7.97 7.50 -92.71 -0.70 7.27 16 39 H 0.05 1.90 7.52 -2.38 -0.02 1.88 16 40 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.01 0.52 7.68 -2.39 -0.02 0.50 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.08 4.15 5.87 -2.39 -0.01 4.14 16 46 H 0.39 11.12 9.12 -74.06 -0.68 10.44 16 Total: -1.00 -73.58 374.81 0.08 -73.49 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.37 Total: 27.51 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.63 Total: 14.80 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -6.31 Total: -121.97 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.90 Total: -41.17 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -73.58 0.08 -73.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958096421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.207 kcal (2) G-P(sol) polarization free energy of solvation -73.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds