Wall clock time and date at job start Tue Mar 31 2020 13:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47327 * 2 1 4 4 N 1.46493 * 109.46974 * 120.00586 * 2 1 3 5 5 C 1.35852 * 126.13770 * 300.01465 * 4 2 1 6 6 N 1.30164 * 109.00596 * 179.74467 * 5 4 2 7 7 C 1.35762 * 108.86905 * 0.38835 * 6 5 4 8 8 C 1.47323 * 126.24033 * 179.88461 * 7 6 5 9 9 O 1.21625 * 120.00214 * 179.69105 * 8 7 6 10 10 N 1.34783 * 119.99682 * 359.68330 * 8 7 6 11 11 C 1.46492 * 119.99766 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47191 * 180.02562 * 11 10 8 13 13 H 1.08995 * 110.91132 * 308.90411 * 12 11 10 14 14 C 1.54907 * 111.00367 * 72.80172 * 12 11 10 15 15 N 1.47430 * 104.83058 * 155.08461 * 14 12 11 16 16 C 1.36939 * 125.64572 * 155.91145 * 15 14 12 17 17 H 1.07999 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99813 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47179 * 90.00038 * 20 18 16 22 22 H 1.48506 * 109.46836 * 210.00049 * 20 18 16 23 23 H 1.48500 * 109.47068 * 329.99551 * 20 18 16 24 24 C 1.47014 * 108.70471 * 335.87277 * 15 14 12 25 25 C 1.54331 * 107.26998 * 1.05754 * 24 15 14 26 26 H 1.09000 * 110.87198 * 263.75468 * 25 24 15 27 27 O 1.42903 * 110.71518 * 140.55636 * 25 24 15 28 28 C 1.35380 * 126.13626 * 120.00039 * 4 2 1 29 29 H 1.08998 * 109.46589 * 299.99916 * 1 2 3 30 30 H 1.08995 * 109.47203 * 59.99541 * 1 2 3 31 31 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46530 * 240.00201 * 2 1 3 33 33 H 1.09002 * 109.47178 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47427 * 300.00670 * 3 2 1 35 35 H 1.08997 * 109.46729 * 60.00263 * 3 2 1 36 36 H 1.08000 * 125.49536 * 359.97438 * 5 4 2 37 37 H 0.96998 * 119.99674 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.47186 * 60.00181 * 11 10 8 39 39 H 1.09007 * 109.47518 * 300.00316 * 11 10 8 40 40 H 1.08997 * 110.36868 * 273.92606 * 14 12 11 41 41 H 1.09001 * 110.36760 * 36.25145 * 14 12 11 42 42 H 0.97001 * 120.00199 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.88743 * 241.64099 * 24 15 14 44 44 H 1.08997 * 109.88268 * 120.47140 * 24 15 14 45 45 H 0.96700 * 114.00311 * 66.48015 * 27 25 24 46 46 H 1.08001 * 126.56556 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.7679 -0.3372 2.4837 6 7 2.3589 -1.1824 3.2778 7 6 3.0167 -2.1033 2.5279 8 6 3.8139 -3.2326 3.0374 9 8 4.3533 -3.9961 2.2593 10 7 3.9456 -3.4195 4.3656 11 6 4.7389 -4.5421 4.8722 12 6 4.7264 -4.5261 6.4021 13 1 5.0011 -3.5426 6.7832 14 6 3.3470 -4.9687 6.9507 15 7 3.6276 -5.4911 8.3005 16 6 2.7286 -5.5640 9.3309 17 1 1.7147 -5.2204 9.1882 18 6 3.1207 -6.0788 10.5590 19 7 4.3564 -6.4971 10.7329 20 14 1.8945 -6.1776 11.9647 21 1 1.1943 -7.4863 11.9196 22 1 2.6124 -6.0446 13.2579 23 1 0.9024 -5.0804 11.8342 24 6 5.0322 -5.9215 8.3568 25 6 5.6578 -5.6256 6.9774 26 1 5.6424 -6.5136 6.3454 27 8 6.9915 -5.1334 7.1222 28 6 2.7998 -1.7960 1.2166 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.1714 0.5066 2.7976 37 1 3.5152 -2.8107 4.9861 38 1 5.7651 -4.4519 4.5159 39 1 4.3115 -5.4793 4.5155 40 1 2.6698 -4.1164 7.0070 41 1 2.9219 -5.7512 6.3220 42 1 4.6304 -6.8571 11.5909 43 1 5.0845 -6.9899 8.5660 44 1 5.5601 -5.3639 9.1305 45 1 7.6137 -5.7823 7.4784 46 1 3.1786 -2.3321 0.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958281378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:12 Heat of formation + Delta-G solvation = -3.051026 kcal Electronic energy + Delta-G solvation = -26836.245490 eV Core-core repulsion = 22955.604256 eV Total energy + Delta-G solvation = -3880.641234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.45230 -39.27108 -38.04717 -36.41633 -35.05002 -34.48471 -32.18555 -31.43449 -30.12289 -29.26098 -27.96935 -27.48190 -25.57026 -24.00693 -23.45594 -22.42616 -20.78436 -20.40673 -20.03466 -19.40635 -17.82938 -16.90644 -16.79575 -16.29588 -15.88535 -15.74437 -15.17772 -14.91492 -14.71600 -14.38485 -14.14138 -14.02793 -13.85917 -13.57813 -13.34090 -13.02882 -12.85498 -12.80047 -12.56669 -12.34227 -12.06048 -11.91161 -11.86484 -11.37995 -11.15494 -10.85466 -10.77119 -10.52191 -10.42077 -10.06436 -10.02626 -9.95921 -9.75587 -9.67699 -9.13843 -8.92440 -8.63176 -8.60167 -6.83525 -5.70089 -3.04008 1.48840 2.27410 2.30853 3.42068 3.45842 3.46857 3.48977 3.64279 3.92054 4.23382 4.27394 4.34787 4.45755 4.49541 4.81554 4.85574 4.95192 5.03546 5.04278 5.11334 5.15618 5.27890 5.34981 5.40552 5.47836 5.52771 5.60136 5.77723 5.84760 5.95145 6.12111 6.14026 6.27348 6.33268 6.46346 6.60678 6.70806 6.79016 6.93809 7.45809 7.54353 7.55894 7.80434 7.87693 8.25172 8.27167 8.44726 9.21971 9.82489 10.47394 11.41666 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017443 B = 0.002457 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.854526 B =11391.448343 C =12594.866518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.125 3.875 3 C -0.164 4.164 4 N -0.453 5.453 5 C 0.186 3.814 6 N -0.460 5.460 7 C -0.059 4.059 8 C 0.601 3.399 9 O -0.553 6.553 10 N -0.708 5.708 11 C 0.134 3.866 12 C -0.107 4.107 13 H 0.090 0.910 14 C 0.141 3.859 15 N -0.603 5.603 16 C -0.227 4.227 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.153 3.847 25 C 0.082 3.918 26 H 0.057 0.943 27 O -0.566 6.566 28 C 0.031 3.969 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.207 0.793 37 H 0.410 0.590 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.023 0.977 42 H 0.252 0.748 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.375 0.625 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.393 14.398 -23.210 27.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.136 5.136 5 C -0.097 4.097 6 N -0.178 5.178 7 C -0.188 4.188 8 C 0.387 3.613 9 O -0.432 6.432 10 N -0.358 5.358 11 C 0.010 3.990 12 C -0.126 4.126 13 H 0.108 0.892 14 C 0.015 3.985 15 N -0.330 5.330 16 C -0.355 4.355 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.027 3.973 25 C 0.022 3.978 26 H 0.075 0.925 27 O -0.371 6.371 28 C -0.107 4.107 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.224 0.776 37 H 0.245 0.755 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.222 0.778 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.336 14.385 -22.981 27.457 hybrid contribution -0.636 -0.286 0.494 0.854 sum -4.972 14.100 -22.488 27.004 Atomic orbital electron populations 1.22195 0.92803 1.03576 1.03654 1.21569 0.95787 0.94198 0.86192 1.22193 1.02398 0.93956 1.03655 1.45655 1.37797 1.21946 1.08235 1.25014 1.04045 1.02009 0.78660 1.70657 1.10666 1.03929 1.32585 1.20620 1.07308 1.00379 0.90496 1.16890 0.79371 0.82643 0.82433 1.90776 1.49178 1.46417 1.56788 1.45828 1.52368 1.31014 1.06626 1.21386 0.95495 0.88894 0.93217 1.22594 0.97227 1.00405 0.92411 0.89207 1.21628 0.93005 0.96344 0.87515 1.44321 1.08107 1.73128 1.07454 1.19083 0.91785 1.35457 0.89192 0.90255 1.24815 0.96741 1.01194 0.97814 1.69944 1.15870 1.47579 1.23728 0.86088 0.79945 0.77771 0.81782 1.21621 1.21685 1.20647 1.21812 0.84995 0.99331 0.91132 1.23135 0.81712 0.94465 0.98453 0.92547 1.86429 1.19577 1.43503 1.87606 1.22577 0.97731 0.90741 0.99697 0.91349 0.90225 0.91475 0.87875 0.91509 0.90222 0.91358 0.77638 0.75458 0.91193 0.91360 0.93728 0.95909 0.93746 0.93711 0.92439 0.77824 0.79696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 9.24 37.16 0.34 -0.18 16 2 C 0.13 0.51 3.57 -67.93 -0.24 0.27 16 3 C -0.16 -0.50 9.24 37.16 0.34 -0.16 16 4 N -0.45 -3.55 2.59 -111.25 -0.29 -3.84 16 5 C 0.19 1.70 11.53 -89.91 -1.04 0.67 16 6 N -0.46 -6.01 11.01 -11.03 -0.12 -6.13 16 7 C -0.06 -0.81 6.98 -83.09 -0.58 -1.39 16 8 C 0.60 9.81 7.81 -12.56 -0.10 9.71 16 9 O -0.55 -10.29 16.88 5.26 0.09 -10.20 16 10 N -0.71 -11.29 5.50 -61.41 -0.34 -11.63 16 11 C 0.13 2.23 5.13 -4.04 -0.02 2.21 16 12 C -0.11 -1.99 2.77 -88.47 -0.25 -2.24 16 13 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 14 C 0.14 3.00 6.65 -2.53 -0.02 2.98 16 15 N -0.60 -15.70 3.39 -170.07 -0.58 -16.28 16 16 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.15 3.75 5.15 -3.06 -0.02 3.74 16 25 C 0.08 1.61 3.80 -24.90 -0.09 1.52 16 26 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 27 O -0.57 -10.32 13.39 -35.23 -0.47 -10.79 16 28 C 0.03 0.33 11.22 -16.64 -0.19 0.14 16 29 H 0.07 0.21 7.94 -51.93 -0.41 -0.20 16 30 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.32 8.07 -51.92 -0.42 -0.10 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 35 H 0.07 0.20 7.94 -51.93 -0.41 -0.21 16 36 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.41 6.31 8.19 -40.82 -0.33 5.98 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.16 7.96 -51.92 -0.41 0.75 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.49 7.91 -51.93 -0.41 0.08 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.04 1.19 7.51 -51.93 -0.39 0.81 16 44 H 0.06 1.58 7.29 -51.93 -0.38 1.21 16 45 H 0.38 5.32 9.12 45.56 0.42 5.73 16 46 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -35.96 382.00 -9.02 -44.99 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.52 Total: 7.23 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -2.10 Total: 10.32 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.75 Total: -64.67 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.38 Total: -20.99 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.96 -9.02 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958281378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.936 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds